Wall clock time and date at job start Tue Mar 31 2020 17:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46958 * 2 1 4 4 C 1.52996 * 109.46831 * 120.00146 * 2 1 3 5 5 C 1.50702 * 109.47163 * 184.99924 * 4 2 1 6 6 N 1.30502 * 125.64611 * 305.04112 * 5 4 2 7 7 C 1.34132 * 109.25440 * 179.97438 * 6 5 4 8 8 C 1.34672 * 108.01861 * 359.73240 * 7 6 5 9 9 N 1.35040 * 125.65210 * 125.00072 * 5 4 2 10 10 H 0.96998 * 126.39692 * 0.03118 * 9 5 4 11 11 O 1.42905 * 109.46817 * 239.99940 * 2 1 3 12 12 C 1.42902 * 113.99887 * 90.00682 * 11 2 1 13 13 C 1.50695 * 109.47140 * 179.97438 * 12 11 2 14 14 O 1.21279 * 119.99880 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00355 * 179.97438 * 13 12 11 16 16 C 1.39233 * 120.00270 * 175.70496 * 15 13 12 17 17 C 1.39480 * 119.83414 * 215.01551 * 16 15 13 18 18 C 1.36377 * 120.16852 * 179.76670 * 17 16 15 19 19 C 1.40867 * 119.82612 * 0.51269 * 18 17 16 20 20 C 1.41157 * 120.16486 * 179.72665 * 19 18 17 21 21 H 1.08002 * 119.99640 * 214.80299 * 20 19 18 22 22 C 1.39905 * 120.00061 * 34.79644 * 20 19 18 23 23 N 1.30877 * 119.99954 * 355.56446 * 22 20 19 24 24 Si 1.86796 * 120.00062 * 175.56320 * 22 20 19 25 25 H 1.48503 * 109.47081 * 60.00265 * 24 22 20 26 26 H 1.48497 * 109.47089 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47210 * 300.00157 * 24 22 20 28 28 C 1.40868 * 119.67397 * 359.74257 * 19 18 17 29 29 C 1.36372 * 119.82626 * 359.97438 * 28 19 18 30 30 H 1.09004 * 109.46883 * 59.99965 * 1 2 3 31 31 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47228 * 300.00042 * 1 2 3 33 33 H 1.09005 * 109.47095 * 64.99907 * 4 2 1 34 34 H 1.09002 * 109.47267 * 305.00104 * 4 2 1 35 35 H 1.07994 * 125.99318 * 180.02562 * 7 6 5 36 36 H 1.07997 * 126.59401 * 180.28049 * 8 7 6 37 37 H 1.08999 * 109.46429 * 299.99664 * 12 11 2 38 38 H 1.08994 * 109.46997 * 59.98991 * 12 11 2 39 39 H 0.97009 * 119.99761 * 355.70995 * 15 13 12 40 40 H 1.08000 * 119.91875 * 0.02562 * 17 16 15 41 41 H 1.08003 * 120.08863 * 180.25491 * 18 17 16 42 42 H 0.96998 * 119.99832 * 180.02562 * 23 22 20 43 43 H 1.08001 * 120.08885 * 179.97438 * 28 19 18 44 44 H 1.08004 * 119.91590 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3128 6 7 4.3705 -0.9782 0.3722 7 6 5.6277 -0.7381 0.7734 8 6 5.5758 -0.2005 2.0071 9 7 4.2532 -0.1275 2.3520 10 1 3.8937 0.2143 3.1856 11 8 2.0063 -0.6737 -1.1668 12 6 2.2001 0.1829 -2.2941 13 6 2.7014 -0.6282 -3.4610 14 8 2.8759 -1.8222 -3.3392 15 7 2.9558 -0.0268 -4.6401 16 6 3.5031 -0.7582 -5.6908 17 6 4.4052 -0.1501 -6.5636 18 6 4.9491 -0.8613 -7.5923 19 6 4.5893 -2.2105 -7.7786 20 6 5.1435 -2.9517 -8.8444 21 1 4.5496 -3.7005 -9.3475 22 6 6.4618 -2.7163 -9.2491 23 7 7.1528 -1.7507 -8.6986 24 14 7.2359 -3.7803 -10.5750 25 1 6.4489 -3.6596 -11.8286 26 1 8.6293 -3.3294 -10.8207 27 1 7.2447 -5.1970 -10.1305 28 6 3.6734 -2.8162 -6.8961 29 6 3.1424 -2.0937 -5.8686 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7515 -1.7716 1.2055 34 1 1.6053 -0.2618 2.1370 35 1 6.5241 -0.9364 0.2048 36 1 6.4163 0.1109 2.6095 37 1 1.2539 0.6547 -2.5588 38 1 2.9319 0.9513 -2.0449 39 1 2.7576 0.9156 -4.7566 40 1 4.6770 0.8855 -6.4220 41 1 5.6507 -0.3903 -8.2649 42 1 8.0667 -1.5873 -8.9795 43 1 3.3925 -3.8500 -7.0329 44 1 2.4397 -2.5566 -5.1914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344644406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:44 Heat of formation + Delta-G solvation = 3.484909 kcal Electronic energy + Delta-G solvation = -26904.712605 eV Core-core repulsion = 23016.177518 eV Total energy + Delta-G solvation = -3888.535087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08341 -39.59811 -38.20016 -36.95107 -34.29349 -33.45902 -32.80657 -32.52473 -30.10194 -29.53691 -29.15268 -27.46795 -26.64165 -24.54095 -21.97447 -21.62234 -21.51478 -20.73123 -20.46491 -19.53226 -18.13651 -17.27201 -17.17756 -16.76447 -15.91442 -15.70411 -15.12776 -15.06066 -14.68961 -14.36775 -14.06805 -13.80784 -13.72951 -13.51546 -13.09331 -12.87614 -12.67087 -12.57213 -12.39925 -12.07615 -12.04620 -11.87766 -11.60751 -11.27088 -11.05292 -10.95599 -10.90310 -10.63790 -10.04269 -9.90613 -9.87055 -9.59108 -9.39144 -9.30354 -8.94796 -8.72033 -8.47590 -7.44534 -6.75643 -6.53175 -4.25424 1.92567 2.68079 2.94197 3.11010 3.12921 3.14362 3.17914 3.19060 3.24874 3.50599 4.04722 4.21403 4.28536 4.56092 4.78345 4.80155 4.90566 5.01744 5.12376 5.15079 5.25700 5.35446 5.41601 5.42493 5.50038 5.59505 5.74097 5.75862 5.93460 6.00369 6.28386 6.55978 6.70678 6.86246 6.99636 7.15060 7.18362 7.24968 7.31158 7.40574 7.73490 7.85777 8.00108 8.14284 8.15872 8.37422 8.42016 8.72025 8.91187 9.01547 9.10793 10.38003 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.002420 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.691732 B =11566.565311 C =12539.074698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.094 3.906 3 H 0.059 0.941 4 C -0.030 4.030 5 C 0.199 3.801 6 N -0.450 5.450 7 C -0.025 4.025 8 C -0.065 4.065 9 N -0.573 5.573 10 H 0.414 0.586 11 O -0.330 6.330 12 C 0.053 3.947 13 C 0.501 3.499 14 O -0.501 6.501 15 N -0.656 5.656 16 C 0.011 3.989 17 C -0.122 4.122 18 C -0.141 4.141 19 C 0.099 3.901 20 C -0.462 4.462 21 H 0.075 0.925 22 C 0.069 3.931 23 N -0.813 5.813 24 Si 0.915 3.085 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.267 1.267 28 C -0.204 4.204 29 C -0.086 4.086 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.394 0.606 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.277 0.723 43 H 0.096 0.904 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.224 9.959 21.001 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.034 3.966 3 H 0.077 0.923 4 C -0.069 4.069 5 C -0.064 4.064 6 N -0.168 5.168 7 C -0.174 4.174 8 C -0.198 4.198 9 N -0.178 5.178 10 H 0.251 0.749 11 O -0.247 6.247 12 C -0.027 4.027 13 C 0.286 3.714 14 O -0.375 6.375 15 N -0.301 5.301 16 C -0.081 4.081 17 C -0.143 4.143 18 C -0.161 4.161 19 C 0.096 3.904 20 C -0.493 4.493 21 H 0.093 0.907 22 C -0.145 4.145 23 N -0.441 5.441 24 Si 0.740 3.260 25 H -0.191 1.191 26 H -0.205 1.205 27 H -0.191 1.191 28 C -0.224 4.224 29 C -0.106 4.106 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.119 0.881 34 H 0.107 0.893 35 H 0.186 0.814 36 H 0.191 0.809 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.227 0.773 40 H 0.109 0.891 41 H 0.149 0.851 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.999 8.619 20.315 23.473 hybrid contribution 0.694 0.938 0.743 1.383 sum -7.305 9.557 21.058 24.251 Atomic orbital electron populations 1.22324 0.95431 1.03403 1.02255 1.21919 0.93171 0.95519 0.85963 0.92316 1.20116 0.85339 1.03933 0.97510 1.23234 0.95927 1.02141 0.85133 1.70535 1.00055 1.19300 1.26958 1.22543 0.96171 1.04156 0.94553 1.22721 0.86073 1.10757 1.00298 1.43356 1.07124 1.50080 1.17194 0.74916 1.88197 1.86177 1.32233 1.18110 1.22130 1.00079 0.93093 0.87428 1.20105 0.79480 0.88746 0.83062 1.90718 1.49560 1.14676 1.82496 1.42874 1.63268 1.12821 1.11154 1.17243 1.03992 0.93468 0.93402 1.20309 0.97628 0.98428 0.97887 1.21180 1.01804 0.94154 0.98999 1.17711 0.89948 0.91305 0.91419 1.19449 0.97135 1.18326 1.14390 0.90720 1.25864 0.97533 0.94963 0.96158 1.69760 1.10354 1.26453 1.37532 0.86260 0.78080 0.80752 0.80885 1.19125 1.20502 1.19130 1.20811 1.05555 0.98470 0.97570 1.20414 0.99796 0.93068 0.97335 0.91975 0.91207 0.91708 0.88134 0.89267 0.81431 0.80866 0.91417 0.91114 0.77334 0.89147 0.85068 0.91190 0.88618 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.53 37.16 0.35 -0.97 16 2 C 0.09 0.92 2.71 -26.73 -0.07 0.85 16 3 H 0.06 0.52 7.79 -51.93 -0.40 0.12 16 4 C -0.03 -0.26 5.55 -27.88 -0.15 -0.42 16 5 C 0.20 2.31 7.41 -155.42 -1.15 1.15 16 6 N -0.45 -7.09 10.44 -10.81 -0.11 -7.21 16 7 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 8 C -0.07 -0.61 12.04 -16.56 -0.20 -0.81 16 9 N -0.57 -4.77 6.15 -10.23 -0.06 -4.84 16 10 H 0.41 1.79 8.96 -40.82 -0.37 1.42 16 11 O -0.33 -4.93 8.63 -55.14 -0.48 -5.40 16 12 C 0.05 0.74 6.23 36.00 0.22 0.96 16 13 C 0.50 9.59 7.74 -10.99 -0.09 9.51 16 14 O -0.50 -12.12 13.92 -14.35 -0.20 -12.32 16 15 N -0.66 -12.16 5.30 -9.74 -0.05 -12.21 16 16 C 0.01 0.26 6.31 -83.57 -0.53 -0.27 16 17 C -0.12 -2.89 9.90 -39.79 -0.39 -3.28 16 18 C -0.14 -3.75 8.62 -39.26 -0.34 -4.09 16 19 C 0.10 2.74 5.55 -106.80 -0.59 2.14 16 20 C -0.46 -12.71 9.02 -37.85 -0.34 -13.05 16 21 H 0.07 1.97 7.85 -52.49 -0.41 1.55 16 22 C 0.07 1.81 5.42 -17.33 -0.09 1.72 16 23 N -0.81 -21.78 10.60 55.55 0.59 -21.20 16 24 Si 0.92 19.58 29.56 -169.99 -5.03 14.55 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 C -0.20 -5.40 9.74 -39.26 -0.38 -5.78 16 29 C -0.09 -2.18 8.61 -39.79 -0.34 -2.52 16 30 H 0.06 0.47 7.87 -51.93 -0.41 0.06 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.07 0.71 7.87 -51.93 -0.41 0.31 16 38 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.39 5.58 8.82 -40.82 -0.36 5.22 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.13 3.57 6.13 -52.48 -0.32 3.25 16 42 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 43 H 0.10 2.41 8.06 -52.49 -0.42 1.99 16 44 H 0.11 2.71 6.22 -52.48 -0.33 2.39 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -36.83 374.84 -9.94 -46.78 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.94 Total: 11.60 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -4.31 Total: -15.41 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.36 Total: -45.44 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.68 Total: -17.73 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.83 -9.94 -46.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344644406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.261 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds