Wall clock time and date at job start Tue Mar 31 2020 17:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.46958 * 2 1 4 4 C 1.52996 * 109.46831 * 120.00146 * 2 1 3 5 5 C 1.50702 * 109.47163 * 184.99924 * 4 2 1 6 6 N 1.30502 * 125.64611 * 305.04112 * 5 4 2 7 7 C 1.34132 * 109.25440 * 179.97438 * 6 5 4 8 8 C 1.34672 * 108.01861 * 359.73240 * 7 6 5 9 9 N 1.35040 * 125.65210 * 125.00072 * 5 4 2 10 10 H 0.96998 * 126.39692 * 0.03118 * 9 5 4 11 11 O 1.42905 * 109.46817 * 239.99940 * 2 1 3 12 12 C 1.42902 * 113.99887 * 90.00682 * 11 2 1 13 13 C 1.50695 * 109.47140 * 179.97438 * 12 11 2 14 14 O 1.21279 * 119.99880 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00355 * 179.97438 * 13 12 11 16 16 C 1.39233 * 120.00270 * 175.70496 * 15 13 12 17 17 C 1.39480 * 119.83414 * 215.01551 * 16 15 13 18 18 C 1.36377 * 120.16852 * 179.76670 * 17 16 15 19 19 C 1.40867 * 119.82612 * 0.51269 * 18 17 16 20 20 C 1.41157 * 120.16486 * 179.72665 * 19 18 17 21 21 H 1.08002 * 119.99640 * 214.80299 * 20 19 18 22 22 C 1.39905 * 120.00061 * 34.79644 * 20 19 18 23 23 N 1.30877 * 119.99954 * 355.56446 * 22 20 19 24 24 Si 1.86796 * 120.00062 * 175.56320 * 22 20 19 25 25 H 1.48503 * 109.47081 * 60.00265 * 24 22 20 26 26 H 1.48497 * 109.47089 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47210 * 300.00157 * 24 22 20 28 28 C 1.40868 * 119.67397 * 359.74257 * 19 18 17 29 29 C 1.36372 * 119.82626 * 359.97438 * 28 19 18 30 30 H 1.09004 * 109.46883 * 59.99965 * 1 2 3 31 31 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47228 * 300.00042 * 1 2 3 33 33 H 1.09005 * 109.47095 * 64.99907 * 4 2 1 34 34 H 1.09002 * 109.47267 * 305.00104 * 4 2 1 35 35 H 1.07994 * 125.99318 * 180.02562 * 7 6 5 36 36 H 1.07997 * 126.59401 * 180.28049 * 8 7 6 37 37 H 1.08999 * 109.46429 * 299.99664 * 12 11 2 38 38 H 1.08994 * 109.46997 * 59.98991 * 12 11 2 39 39 H 0.97009 * 119.99761 * 355.70995 * 15 13 12 40 40 H 1.08000 * 119.91875 * 0.02562 * 17 16 15 41 41 H 1.08003 * 120.08863 * 180.25491 * 18 17 16 42 42 H 0.96998 * 119.99832 * 180.02562 * 23 22 20 43 43 H 1.08001 * 120.08885 * 179.97438 * 28 19 18 44 44 H 1.08004 * 119.91590 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3128 6 7 4.3705 -0.9782 0.3722 7 6 5.6277 -0.7381 0.7734 8 6 5.5758 -0.2005 2.0071 9 7 4.2532 -0.1275 2.3520 10 1 3.8937 0.2143 3.1856 11 8 2.0063 -0.6737 -1.1668 12 6 2.2001 0.1829 -2.2941 13 6 2.7014 -0.6282 -3.4610 14 8 2.8759 -1.8222 -3.3392 15 7 2.9558 -0.0268 -4.6401 16 6 3.5031 -0.7582 -5.6908 17 6 4.4052 -0.1501 -6.5636 18 6 4.9491 -0.8613 -7.5923 19 6 4.5893 -2.2105 -7.7786 20 6 5.1435 -2.9517 -8.8444 21 1 4.5496 -3.7005 -9.3475 22 6 6.4618 -2.7163 -9.2491 23 7 7.1528 -1.7507 -8.6986 24 14 7.2359 -3.7803 -10.5750 25 1 6.4489 -3.6596 -11.8286 26 1 8.6293 -3.3294 -10.8207 27 1 7.2447 -5.1970 -10.1305 28 6 3.6734 -2.8162 -6.8961 29 6 3.1424 -2.0937 -5.8686 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.7515 -1.7716 1.2055 34 1 1.6053 -0.2618 2.1370 35 1 6.5241 -0.9364 0.2048 36 1 6.4163 0.1109 2.6095 37 1 1.2539 0.6547 -2.5588 38 1 2.9319 0.9513 -2.0449 39 1 2.7576 0.9156 -4.7566 40 1 4.6770 0.8855 -6.4220 41 1 5.6507 -0.3903 -8.2649 42 1 8.0667 -1.5873 -8.9795 43 1 3.3925 -3.8500 -7.0329 44 1 2.4397 -2.5566 -5.1914 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344644406.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:43 Heat of formation + Delta-G solvation = -21.111503 kcal Electronic energy + Delta-G solvation = -26905.779186 eV Core-core repulsion = 23016.177518 eV Total energy + Delta-G solvation = -3889.601667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.88383 -41.18520 -39.43358 -38.61170 -36.11478 -34.71037 -34.27163 -33.35762 -31.50634 -31.10335 -30.73184 -28.86439 -27.39170 -26.38055 -23.44024 -22.75756 -22.53474 -22.42464 -21.37767 -21.10738 -19.27009 -18.89596 -18.55981 -18.00132 -17.41153 -17.00382 -16.80020 -16.09207 -15.74895 -15.65463 -15.39888 -15.04036 -14.94920 -14.67471 -14.50963 -14.31283 -14.00024 -13.80366 -13.62474 -13.53149 -13.22400 -13.01945 -12.93727 -12.81371 -12.70149 -12.65246 -12.46325 -11.78288 -11.66671 -11.38708 -11.19251 -10.90405 -10.77412 -10.74022 -10.50797 -10.45957 -9.46046 -9.28861 -8.71810 -8.49323 -6.32221 0.81097 1.14180 1.16467 1.39472 1.47675 1.51971 1.79759 2.03590 2.24994 2.26274 2.30447 2.81147 3.15706 3.56664 3.67069 3.82838 4.00019 4.15243 4.20839 4.24860 4.35257 4.40302 4.46045 4.52821 4.54402 4.59914 4.84498 4.86363 4.90806 4.94065 5.09618 5.14970 5.15675 5.18309 5.35109 5.39752 5.44812 5.70202 5.85999 5.91476 6.03066 6.13841 6.32444 6.40335 6.64309 6.68379 6.78226 6.97326 7.01024 7.33141 7.45450 8.43531 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017380 B = 0.002420 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.691732 B =11566.565311 C =12539.074698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.088 3.912 3 H 0.073 0.927 4 C -0.029 4.029 5 C 0.192 3.808 6 N -0.515 5.515 7 C -0.079 4.079 8 C -0.034 4.034 9 N -0.555 5.555 10 H 0.436 0.564 11 O -0.370 6.370 12 C 0.066 3.934 13 C 0.496 3.504 14 O -0.559 6.559 15 N -0.645 5.645 16 C 0.024 3.976 17 C -0.119 4.119 18 C -0.159 4.159 19 C 0.067 3.933 20 C -0.499 4.499 21 H 0.073 0.927 22 C 0.027 3.973 23 N -0.842 5.842 24 Si 0.990 3.010 25 H -0.257 1.257 26 H -0.267 1.267 27 H -0.267 1.267 28 C -0.222 4.222 29 C -0.099 4.099 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.157 0.843 36 H 0.213 0.787 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.419 0.581 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.285 0.715 43 H 0.094 0.906 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.885 12.340 23.254 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.029 3.971 3 H 0.091 0.909 4 C -0.068 4.068 5 C -0.072 4.072 6 N -0.235 5.235 7 C -0.226 4.226 8 C -0.169 4.169 9 N -0.160 5.160 10 H 0.277 0.723 11 O -0.288 6.288 12 C -0.014 4.014 13 C 0.284 3.716 14 O -0.436 6.436 15 N -0.292 5.292 16 C -0.069 4.069 17 C -0.139 4.139 18 C -0.179 4.179 19 C 0.065 3.935 20 C -0.530 4.530 21 H 0.091 0.909 22 C -0.185 4.185 23 N -0.470 5.470 24 Si 0.810 3.190 25 H -0.181 1.181 26 H -0.191 1.191 27 H -0.191 1.191 28 C -0.242 4.242 29 C -0.119 4.119 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.175 0.825 36 H 0.230 0.770 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.256 0.744 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.701 11.073 22.615 26.641 hybrid contribution 0.844 0.267 0.234 0.916 sum -7.857 11.340 22.849 26.691 Atomic orbital electron populations 1.22288 0.93505 1.03074 1.03890 1.22230 0.94564 0.95904 0.84386 0.90907 1.20311 0.83850 1.03529 0.99111 1.23594 0.96792 1.01703 0.85139 1.70422 1.01577 1.21608 1.29852 1.22674 0.95682 1.07431 0.96855 1.23159 0.87345 1.07567 0.98813 1.43274 1.06476 1.48876 1.17423 0.72263 1.88164 1.86954 1.34124 1.19594 1.22063 1.02180 0.91827 0.85315 1.21195 0.77831 0.88513 0.84091 1.90696 1.51868 1.17544 1.83480 1.42784 1.62532 1.13787 1.10109 1.17312 1.02753 0.93002 0.93853 1.20569 0.96680 0.99914 0.96707 1.21189 1.02467 0.94063 1.00155 1.18032 0.90898 0.92281 0.92324 1.19695 0.98462 1.19305 1.15508 0.90928 1.26761 0.97344 0.96141 0.98257 1.69824 1.10912 1.27618 1.38631 0.85140 0.77534 0.78430 0.77852 1.18079 1.19132 1.19128 1.20928 1.06187 0.98798 0.98276 1.20506 1.00128 0.94302 0.96939 0.91888 0.92520 0.88503 0.89691 0.84463 0.82515 0.77009 0.87305 0.89318 0.74375 0.85554 0.86125 0.90462 0.88752 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 9.53 71.98 0.69 -1.33 16 2 C 0.09 1.50 2.71 30.59 0.08 1.59 16 3 H 0.07 1.03 7.79 -2.39 -0.02 1.01 16 4 C -0.03 -0.45 5.55 29.85 0.17 -0.28 16 5 C 0.19 4.17 7.41 138.13 1.02 5.19 16 6 N -0.51 -16.48 10.44 -188.13 -1.96 -18.44 16 7 C -0.08 -2.14 11.87 83.52 0.99 -1.14 16 8 C -0.03 -0.57 12.04 83.09 1.00 0.43 16 9 N -0.55 -7.66 6.15 -186.27 -1.15 -8.81 16 10 H 0.44 1.99 8.96 -92.71 -0.83 1.16 16 11 O -0.37 -10.72 8.63 -129.94 -1.12 -11.84 16 12 C 0.07 1.70 6.23 71.23 0.44 2.14 16 13 C 0.50 18.78 7.74 87.66 0.68 19.46 16 14 O -0.56 -27.88 13.92 16.01 0.22 -27.66 16 15 N -0.64 -23.14 5.30 -303.13 -1.61 -24.75 16 16 C 0.02 1.13 6.31 38.56 0.24 1.38 16 17 C -0.12 -5.59 9.90 22.13 0.22 -5.37 16 18 C -0.16 -8.65 8.62 22.48 0.19 -8.46 16 19 C 0.07 3.88 5.55 -21.28 -0.12 3.76 16 20 C -0.50 -28.57 9.02 23.39 0.21 -28.36 16 21 H 0.07 4.01 7.85 -2.91 -0.02 3.98 16 22 C 0.03 1.42 5.42 85.24 0.46 1.88 16 23 N -0.84 -46.03 10.60 21.82 0.23 -45.79 16 24 Si 0.99 40.59 29.56 68.60 2.03 42.62 16 25 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 26 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 28 C -0.22 -12.35 9.74 22.48 0.22 -12.14 16 29 C -0.10 -5.16 8.61 22.13 0.19 -4.97 16 30 H 0.06 0.74 7.87 -2.38 -0.02 0.72 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.16 4.21 8.06 -2.91 -0.02 4.18 16 36 H 0.21 1.71 8.06 -2.91 -0.02 1.68 16 37 H 0.11 1.90 7.87 -2.39 -0.02 1.88 16 38 H 0.09 1.98 8.08 -2.39 -0.02 1.96 16 39 H 0.42 10.77 8.82 -92.70 -0.82 9.95 16 40 H 0.13 4.96 8.06 -2.91 -0.02 4.93 16 41 H 0.12 6.78 6.13 -2.91 -0.02 6.76 16 42 H 0.28 14.15 8.30 -92.71 -0.77 13.38 16 43 H 0.09 5.07 8.06 -2.91 -0.02 5.05 16 44 H 0.10 5.45 6.22 -2.91 -0.02 5.43 16 Total: -1.00 -87.09 374.84 2.73 -84.36 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.60 Total: 36.53 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 6.69 Total: -26.21 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -4.49 Total: -97.79 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.90 Total: -39.50 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.03 Total: 42.62 kcal Total: -87.09 2.73 -84.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344644406.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.244 kcal (2) G-P(sol) polarization free energy of solvation -87.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds