Wall clock time and date at job start Tue Mar 31 2020 17:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35653 * 116.99758 * 2 1 4 4 C 1.38795 * 119.98260 * 359.97134 * 3 2 1 5 5 C 1.37767 * 120.23233 * 179.97438 * 4 3 2 6 6 C 1.39830 * 120.19769 * 0.02562 * 5 4 3 7 7 C 1.47631 * 120.02090 * 180.02562 * 6 5 4 8 8 O 1.21580 * 119.99616 * 179.97438 * 7 6 5 9 9 N 1.34769 * 119.99991 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00059 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46958 * 325.00200 * 10 9 7 12 12 C 1.52999 * 109.46745 * 84.99867 * 10 9 7 13 13 C 1.50696 * 109.47314 * 205.00119 * 10 9 7 14 14 H 1.08005 * 120.00208 * 359.97438 * 13 10 9 15 15 C 1.37882 * 120.00047 * 180.02562 * 13 10 9 16 16 N 1.31510 * 119.99670 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99986 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47177 * 89.99620 * 17 15 13 19 19 H 1.48502 * 109.47192 * 209.99827 * 17 15 13 20 20 H 1.48501 * 109.47072 * 329.99530 * 17 15 13 21 21 C 1.39474 * 119.95815 * 359.76081 * 6 5 4 22 22 C 1.39063 * 119.76353 * 0.49114 * 21 6 5 23 23 C 1.47947 * 120.09250 * 179.76864 * 22 21 6 24 24 C 1.36650 * 126.33643 * 227.37859 * 23 22 21 25 25 C 1.39508 * 107.84440 * 179.97438 * 24 23 22 26 26 N 1.30892 * 108.59444 * 359.97438 * 25 24 23 27 27 N 1.36291 * 126.34316 * 47.33644 * 23 22 21 28 28 C 1.46499 * 126.13396 * 0.02562 * 27 23 22 29 29 H 1.08999 * 109.47371 * 300.00254 * 1 2 3 30 30 H 1.08995 * 109.47465 * 60.00503 * 1 2 3 31 31 H 1.09006 * 109.46735 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.88441 * 0.03039 * 4 3 2 33 33 H 1.08001 * 119.89945 * 180.02562 * 5 4 3 34 34 H 0.97003 * 120.00364 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.47138 * 179.97438 * 12 10 9 36 36 H 1.08994 * 109.47483 * 299.99830 * 12 10 9 37 37 H 1.09001 * 109.47543 * 60.00357 * 12 10 9 38 38 H 0.97006 * 119.99816 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.11949 * 180.27547 * 21 6 5 40 40 H 1.07996 * 126.07698 * 359.96641 * 24 23 22 41 41 H 1.08001 * 125.70543 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.47362 * 275.23212 * 28 27 23 43 43 H 1.08997 * 109.47257 * 35.23902 * 28 27 23 44 44 H 1.09005 * 109.46676 * 155.23679 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2885 2.3725 -0.0006 5 6 1.9085 3.6027 -0.0001 6 6 3.3043 3.6869 0.0005 7 6 3.9647 5.0073 0.0017 8 8 5.1783 5.0799 0.0027 9 7 3.2222 6.1320 0.0026 10 6 3.8775 7.4423 0.0043 11 1 4.7927 7.3900 0.5940 12 6 4.2186 7.8437 -1.4321 13 6 2.9504 8.4669 0.6056 14 1 1.9707 8.1717 0.9515 15 6 3.3523 9.7814 0.7132 16 7 4.5449 10.1409 0.2916 17 14 2.2027 11.0516 1.4579 18 1 2.4266 11.1227 2.9241 19 1 2.4727 12.3798 0.8509 20 1 0.7948 10.6622 1.1904 21 6 4.0722 2.5226 0.0056 22 6 3.4447 1.2816 -0.0002 23 6 4.2522 0.0420 0.0000 24 6 4.0730 -1.0412 -0.8136 25 6 5.0452 -1.9869 -0.4868 26 7 5.7856 -1.5072 0.4802 27 7 5.3130 -0.2308 0.8110 28 6 5.8608 0.6526 1.8433 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2101 2.3134 -0.0006 33 1 1.3147 4.5049 -0.0001 34 1 2.2539 6.0740 0.0022 35 1 4.7058 8.8188 -1.4310 36 1 4.8892 7.1026 -1.8670 37 1 3.3034 7.8960 -2.0219 38 1 4.8276 11.0658 0.3669 39 1 5.1505 2.5846 0.0106 40 1 3.3136 -1.1465 -1.5743 41 1 5.1671 -2.9529 -0.9540 42 1 6.5654 1.3492 1.3889 43 1 5.0500 1.2100 2.3122 44 1 6.3748 0.0558 2.5968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507083578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:59 Heat of formation + Delta-G solvation = 31.326527 kcal Electronic energy + Delta-G solvation = -27455.113250 eV Core-core repulsion = 23567.785467 eV Total energy + Delta-G solvation = -3887.327784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31202 -40.20635 -39.05294 -37.07626 -34.87020 -33.49017 -32.72040 -32.12597 -30.60047 -29.23321 -28.61369 -27.42917 -26.77118 -25.29987 -23.66931 -23.08752 -21.42219 -20.79292 -20.35403 -19.43063 -18.35006 -17.72353 -16.66542 -16.54887 -16.04051 -15.72693 -15.38275 -15.19341 -14.87744 -14.44788 -14.25527 -14.22021 -14.00474 -13.61591 -13.42719 -13.24707 -12.83307 -12.66742 -12.57615 -12.47020 -12.37260 -12.05770 -11.74952 -11.28992 -11.20900 -11.11727 -11.00551 -10.78144 -10.73045 -10.35102 -10.27513 -9.76312 -9.23385 -9.09611 -9.05289 -8.63970 -8.59322 -8.20609 -7.93958 -6.16539 -4.26237 0.74114 0.98614 1.89793 2.44005 2.77729 2.94157 3.17136 3.21382 3.28185 3.29570 3.93714 4.03458 4.23740 4.33244 4.49797 4.58626 4.71302 4.85195 4.94018 5.07017 5.09240 5.12635 5.15465 5.17194 5.18591 5.33504 5.41469 5.56259 5.58410 5.76501 5.85091 6.05508 6.11652 6.26013 6.42583 6.61516 6.79104 6.88209 6.92994 7.07206 7.10726 7.38525 7.50683 7.64496 7.65547 7.86680 8.10369 8.58072 8.72199 9.02562 9.41271 10.89462 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017888 B = 0.002783 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.930687 B =10060.148386 C =11061.422176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.302 6.302 3 C 0.171 3.829 4 C -0.215 4.215 5 C -0.035 4.035 6 C -0.155 4.155 7 C 0.545 3.455 8 O -0.552 6.552 9 N -0.701 5.701 10 C 0.264 3.736 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.902 3.098 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.010 4.010 22 C -0.083 4.083 23 C 0.138 3.862 24 C -0.244 4.244 25 C 0.041 3.959 26 N -0.296 5.296 27 N -0.368 5.368 28 C 0.097 3.903 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.387 0.613 35 H 0.091 0.909 36 H 0.015 0.985 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.182 0.818 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.206 -20.766 -0.672 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.214 6.214 3 C 0.123 3.877 4 C -0.233 4.233 5 C -0.054 4.054 6 C -0.159 4.159 7 C 0.331 3.669 8 O -0.432 6.432 9 N -0.349 5.349 10 C 0.163 3.837 11 H 0.068 0.932 12 C -0.206 4.206 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.729 3.271 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.030 4.030 22 C -0.086 4.086 23 C 0.011 3.989 24 C -0.273 4.273 25 C -0.144 4.144 26 N -0.118 5.118 27 N -0.152 5.152 28 C -0.045 4.045 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.156 0.844 33 H 0.154 0.846 34 H 0.221 0.779 35 H 0.109 0.891 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.199 0.801 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.064 -20.833 0.210 21.699 hybrid contribution -2.073 1.075 -0.183 2.342 sum -8.137 -19.758 0.027 21.368 Atomic orbital electron populations 1.23150 0.78143 1.04211 1.01690 1.86124 1.21433 1.26290 1.87539 1.19032 0.90722 0.84627 0.93272 1.21090 1.00339 0.91577 1.10314 1.21311 0.93625 0.97667 0.92810 1.20126 0.93499 0.94548 1.07709 1.18044 0.87179 0.83869 0.77835 1.90737 1.13545 1.87397 1.51532 1.46486 1.09574 1.07226 1.71606 1.18784 0.94144 0.76651 0.94113 0.93184 1.22085 0.98797 1.02490 0.97264 1.21198 1.01565 0.93019 1.41609 0.92075 1.24886 0.95329 0.98329 0.95119 1.69900 1.18275 1.18119 1.45667 0.86443 0.80764 0.80564 0.79290 1.20541 1.21035 1.19848 1.21200 1.00693 0.89057 0.92020 1.17155 0.88980 0.90823 1.11619 1.19246 0.90518 0.94912 0.94210 1.21334 1.05349 0.94207 1.06429 1.23680 0.94425 1.00279 0.96004 1.77304 1.22992 0.92978 1.18500 1.48843 1.24054 1.13297 1.28961 1.21951 1.00299 0.92715 0.89502 0.92387 0.92232 0.88048 0.84384 0.84581 0.77917 0.89051 0.96549 0.95417 0.92509 0.83991 0.83539 0.80106 0.90197 0.89531 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.30 -3.09 9.27 -18.66 -0.17 -3.26 16 3 C 0.17 1.98 6.67 -38.65 -0.26 1.72 16 4 C -0.21 -2.21 9.01 -39.55 -0.36 -2.57 16 5 C -0.04 -0.43 9.52 -39.16 -0.37 -0.80 16 6 C -0.16 -2.38 5.87 -105.01 -0.62 -3.00 16 7 C 0.55 10.82 7.73 -12.43 -0.10 10.73 16 8 O -0.55 -13.02 15.99 5.29 0.08 -12.93 16 9 N -0.70 -14.25 5.02 -55.95 -0.28 -14.53 16 10 C 0.26 6.60 2.56 -69.08 -0.18 6.43 16 11 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 12 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 13 C -0.54 -13.85 8.73 -34.44 -0.30 -14.16 16 14 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 16 N -0.88 -24.49 11.32 55.43 0.63 -23.86 16 17 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 21 C -0.01 -0.14 8.44 -38.82 -0.33 -0.47 16 22 C -0.08 -1.09 5.47 -104.89 -0.57 -1.67 16 23 C 0.14 1.85 6.20 -82.48 -0.51 1.34 16 24 C -0.24 -3.00 9.89 -39.68 -0.39 -3.40 16 25 C 0.04 0.48 11.99 -17.48 -0.21 0.27 16 26 N -0.30 -4.10 12.56 30.56 0.38 -3.72 16 27 N -0.37 -4.95 4.05 -64.16 -0.26 -5.21 16 28 C 0.10 1.04 10.27 59.85 0.61 1.65 16 29 H 0.06 0.30 7.65 -51.93 -0.40 -0.09 16 30 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 1.01 6.27 -52.49 -0.33 0.68 16 33 H 0.14 1.43 6.38 -52.49 -0.33 1.10 16 34 H 0.39 6.66 6.55 -40.82 -0.27 6.39 16 35 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.14 2.15 7.04 -52.49 -0.37 1.78 16 40 H 0.15 1.58 8.05 -52.49 -0.42 1.15 16 41 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 42 H 0.08 0.83 7.95 -51.93 -0.41 0.41 16 43 H 0.09 0.87 7.79 -51.93 -0.40 0.46 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -33.19 371.45 -7.08 -40.26 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.70 Total: 6.88 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.34 Total: -4.41 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: 0.47 Total: -47.32 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.09 Total: -16.19 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.19 -7.08 -40.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507083578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.589 kcal (2) G-P(sol) polarization free energy of solvation -33.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds