Wall clock time and date at job start Tue Mar 31 2020 17:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35653 * 116.99758 * 2 1 4 4 C 1.38795 * 119.98260 * 359.97134 * 3 2 1 5 5 C 1.37767 * 120.23233 * 179.97438 * 4 3 2 6 6 C 1.39830 * 120.19769 * 0.02562 * 5 4 3 7 7 C 1.47631 * 120.02090 * 180.02562 * 6 5 4 8 8 O 1.21580 * 119.99616 * 179.97438 * 7 6 5 9 9 N 1.34769 * 119.99991 * 0.02562 * 7 6 5 10 10 C 1.46501 * 120.00059 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.46958 * 325.00200 * 10 9 7 12 12 C 1.52999 * 109.46745 * 84.99867 * 10 9 7 13 13 C 1.50696 * 109.47314 * 205.00119 * 10 9 7 14 14 H 1.08005 * 120.00208 * 359.97438 * 13 10 9 15 15 C 1.37882 * 120.00047 * 180.02562 * 13 10 9 16 16 N 1.31510 * 119.99670 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 119.99986 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47177 * 89.99620 * 17 15 13 19 19 H 1.48502 * 109.47192 * 209.99827 * 17 15 13 20 20 H 1.48501 * 109.47072 * 329.99530 * 17 15 13 21 21 C 1.39474 * 119.95815 * 359.76081 * 6 5 4 22 22 C 1.39063 * 119.76353 * 0.49114 * 21 6 5 23 23 C 1.47947 * 120.09250 * 179.76864 * 22 21 6 24 24 C 1.36650 * 126.33643 * 227.37859 * 23 22 21 25 25 C 1.39508 * 107.84440 * 179.97438 * 24 23 22 26 26 N 1.30892 * 108.59444 * 359.97438 * 25 24 23 27 27 N 1.36291 * 126.34316 * 47.33644 * 23 22 21 28 28 C 1.46499 * 126.13396 * 0.02562 * 27 23 22 29 29 H 1.08999 * 109.47371 * 300.00254 * 1 2 3 30 30 H 1.08995 * 109.47465 * 60.00503 * 1 2 3 31 31 H 1.09006 * 109.46735 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.88441 * 0.03039 * 4 3 2 33 33 H 1.08001 * 119.89945 * 180.02562 * 5 4 3 34 34 H 0.97003 * 120.00364 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.47138 * 179.97438 * 12 10 9 36 36 H 1.08994 * 109.47483 * 299.99830 * 12 10 9 37 37 H 1.09001 * 109.47543 * 60.00357 * 12 10 9 38 38 H 0.97006 * 119.99816 * 179.97438 * 16 15 13 39 39 H 1.08001 * 120.11949 * 180.27547 * 21 6 5 40 40 H 1.07996 * 126.07698 * 359.96641 * 24 23 22 41 41 H 1.08001 * 125.70543 * 180.02562 * 25 24 23 42 42 H 1.09000 * 109.47362 * 275.23212 * 28 27 23 43 43 H 1.08997 * 109.47257 * 35.23902 * 28 27 23 44 44 H 1.09005 * 109.46676 * 155.23679 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2885 2.3725 -0.0006 5 6 1.9085 3.6027 -0.0001 6 6 3.3043 3.6869 0.0005 7 6 3.9647 5.0073 0.0017 8 8 5.1783 5.0799 0.0027 9 7 3.2222 6.1320 0.0026 10 6 3.8775 7.4423 0.0043 11 1 4.7927 7.3900 0.5940 12 6 4.2186 7.8437 -1.4321 13 6 2.9504 8.4669 0.6056 14 1 1.9707 8.1717 0.9515 15 6 3.3523 9.7814 0.7132 16 7 4.5449 10.1409 0.2916 17 14 2.2027 11.0516 1.4579 18 1 2.4266 11.1227 2.9241 19 1 2.4727 12.3798 0.8509 20 1 0.7948 10.6622 1.1904 21 6 4.0722 2.5226 0.0056 22 6 3.4447 1.2816 -0.0002 23 6 4.2522 0.0420 0.0000 24 6 4.0730 -1.0412 -0.8136 25 6 5.0452 -1.9869 -0.4868 26 7 5.7856 -1.5072 0.4802 27 7 5.3130 -0.2308 0.8110 28 6 5.8608 0.6526 1.8433 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2101 2.3134 -0.0006 33 1 1.3147 4.5049 -0.0001 34 1 2.2539 6.0740 0.0022 35 1 4.7058 8.8188 -1.4310 36 1 4.8892 7.1026 -1.8670 37 1 3.3034 7.8960 -2.0219 38 1 4.8276 11.0658 0.3669 39 1 5.1505 2.5846 0.0106 40 1 3.3136 -1.1465 -1.5743 41 1 5.1671 -2.9529 -0.9540 42 1 6.5654 1.3492 1.3889 43 1 5.0500 1.2100 2.3122 44 1 6.3748 0.0558 2.5968 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507083578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:57 Heat of formation + Delta-G solvation = 9.469946 kcal Electronic energy + Delta-G solvation = -27456.061023 eV Core-core repulsion = 23567.785467 eV Total energy + Delta-G solvation = -3888.275556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25736 -41.23799 -40.38366 -38.15323 -36.72663 -34.60932 -34.20884 -33.32501 -31.77631 -30.71711 -29.67900 -28.18357 -27.66535 -27.33863 -24.83508 -24.20076 -22.72247 -21.91384 -21.62233 -20.87063 -19.38053 -18.96378 -17.98225 -17.60349 -17.33191 -16.82299 -16.72275 -16.27555 -16.10616 -15.86449 -15.71177 -15.20423 -14.98894 -14.89569 -14.51855 -14.38362 -14.12890 -13.82114 -13.79835 -13.56103 -13.44525 -13.22569 -12.97303 -12.88747 -12.83911 -12.75575 -12.26914 -12.12755 -12.03118 -12.01065 -11.68319 -11.11817 -10.91089 -10.71510 -10.59315 -10.01713 -9.85911 -9.55346 -9.10624 -8.17150 -6.34929 -0.25893 -0.04946 0.93607 1.46508 1.46878 1.53206 1.57625 1.81401 1.99896 2.20359 2.33733 2.56128 2.77092 3.13815 3.29687 3.63879 3.73995 3.84061 3.92183 4.08155 4.26237 4.28336 4.35119 4.42697 4.48470 4.55970 4.62476 4.65010 4.74415 4.80573 4.86391 4.91589 4.92220 5.06952 5.09915 5.17171 5.23765 5.43437 5.45100 5.59401 5.68287 5.74719 5.89722 5.96574 6.08851 6.29180 6.71882 6.72240 6.91627 7.31348 7.49634 8.89403 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017888 B = 0.002783 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.930687 B =10060.148386 C =11061.422176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.312 6.312 3 C 0.185 3.815 4 C -0.200 4.200 5 C -0.025 4.025 6 C -0.178 4.178 7 C 0.544 3.456 8 O -0.601 6.601 9 N -0.696 5.696 10 C 0.271 3.729 11 H -0.001 1.001 12 C -0.135 4.135 13 C -0.546 4.546 14 H 0.077 0.923 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.973 3.027 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.256 1.256 21 C -0.013 4.013 22 C -0.092 4.092 23 C 0.121 3.879 24 C -0.248 4.248 25 C 0.043 3.957 26 N -0.326 5.326 27 N -0.381 5.381 28 C 0.094 3.906 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.179 0.821 33 H 0.156 0.844 34 H 0.405 0.595 35 H 0.067 0.933 36 H 0.010 0.990 37 H 0.043 0.957 38 H 0.265 0.735 39 H 0.122 0.878 40 H 0.162 0.838 41 H 0.216 0.784 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 -22.260 -0.683 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.224 6.224 3 C 0.136 3.864 4 C -0.218 4.218 5 C -0.044 4.044 6 C -0.182 4.182 7 C 0.332 3.668 8 O -0.485 6.485 9 N -0.345 5.345 10 C 0.168 3.832 11 H 0.017 0.983 12 C -0.194 4.194 13 C -0.584 4.584 14 H 0.095 0.905 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.798 3.202 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.180 1.180 21 C -0.033 4.033 22 C -0.095 4.095 23 C -0.006 4.006 24 C -0.277 4.277 25 C -0.141 4.141 26 N -0.148 5.148 27 N -0.164 5.164 28 C -0.047 4.047 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.197 0.803 33 H 0.173 0.827 34 H 0.242 0.758 35 H 0.086 0.914 36 H 0.029 0.971 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.180 0.820 41 H 0.232 0.768 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.016 -22.362 0.200 24.504 hybrid contribution -0.904 1.359 -0.199 1.644 sum -10.920 -21.003 0.001 23.672 Atomic orbital electron populations 1.23541 0.75601 1.06129 1.03106 1.86134 1.23986 1.25478 1.86752 1.19122 0.90180 0.85763 0.91310 1.21424 1.02131 0.89974 1.08293 1.21487 0.91984 0.99431 0.91471 1.19693 0.94970 0.91800 1.11714 1.18705 0.86664 0.85252 0.76138 1.90703 1.15892 1.88267 1.53589 1.46167 1.10415 1.05925 1.72003 1.18375 0.92648 0.78903 0.93300 0.98308 1.21915 0.99061 1.00928 0.97484 1.21541 1.02130 0.93293 1.41466 0.90469 1.25819 0.96774 1.00576 0.95460 1.70059 1.20223 1.18526 1.46859 0.85327 0.79319 0.77528 0.78059 1.20459 1.21130 1.18029 1.21000 0.99852 0.89726 0.92741 1.17146 0.90083 0.89956 1.12282 1.19519 0.90858 0.95441 0.94759 1.21606 1.05765 0.93914 1.06368 1.24282 0.93385 1.01324 0.95063 1.77261 1.24156 0.93536 1.19813 1.49051 1.24336 1.13511 1.29525 1.22043 1.00444 0.92741 0.89495 0.91063 0.90561 0.86155 0.80349 0.82653 0.75821 0.91383 0.97118 0.93819 0.92556 0.85996 0.82047 0.76750 0.90689 0.89210 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.19 16 2 O -0.31 -5.29 9.27 -89.68 -0.83 -6.13 16 3 C 0.18 3.76 6.67 22.87 0.15 3.91 16 4 C -0.20 -3.34 9.01 22.29 0.20 -3.14 16 5 C -0.02 -0.54 9.52 22.54 0.21 -0.33 16 6 C -0.18 -5.47 5.87 -20.11 -0.12 -5.59 16 7 C 0.54 22.37 7.73 86.72 0.67 23.04 16 8 O -0.60 -30.29 15.99 -3.97 -0.06 -30.35 16 9 N -0.70 -28.61 5.02 -449.20 -2.25 -30.86 16 10 C 0.27 13.97 2.56 44.24 0.11 14.08 16 11 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 12 C -0.14 -6.86 9.26 71.98 0.67 -6.19 16 13 C -0.55 -28.25 8.73 25.60 0.22 -28.03 16 14 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 15 C 0.01 0.73 5.30 84.66 0.45 1.18 16 16 N -0.92 -52.30 11.32 21.45 0.24 -52.06 16 17 Si 0.97 41.01 29.54 68.60 2.03 43.04 16 18 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 21 C -0.01 -0.39 8.44 22.77 0.19 -0.20 16 22 C -0.09 -2.35 5.47 -20.04 -0.11 -2.46 16 23 C 0.12 3.19 6.20 40.65 0.25 3.44 16 24 C -0.25 -5.74 9.89 22.20 0.22 -5.52 16 25 C 0.04 0.96 11.99 85.14 1.02 1.98 16 26 N -0.33 -8.91 12.56 -57.23 -0.72 -9.63 16 27 N -0.38 -10.33 4.05 -356.91 -1.45 -11.78 16 28 C 0.09 2.10 10.27 127.77 1.31 3.41 16 29 H 0.07 0.39 7.65 -2.39 -0.02 0.37 16 30 H 0.08 0.36 7.65 -2.39 -0.02 0.34 16 31 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.18 1.55 6.27 -2.91 -0.02 1.53 16 33 H 0.16 2.73 6.38 -2.91 -0.02 2.71 16 34 H 0.41 13.43 6.55 -92.71 -0.61 12.82 16 35 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 39 H 0.12 4.03 7.04 -2.91 -0.02 4.01 16 40 H 0.16 3.11 8.05 -2.91 -0.02 3.09 16 41 H 0.22 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.07 1.71 7.95 -2.39 -0.02 1.69 16 43 H 0.09 1.90 7.79 -2.39 -0.02 1.88 16 44 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -75.42 371.45 3.96 -71.47 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.43 Total: 25.51 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: 6.57 Total: 0.78 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -4.18 Total: -104.33 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.89 Total: -36.48 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -75.42 3.96 -71.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507083578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.936 kcal (2) G-P(sol) polarization free energy of solvation -75.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds