Wall clock time and date at job start Tue Mar 31 2020 17:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 N 1.32413 * 118.52678 * 74.99921 * 4 2 1 6 6 C 1.32398 * 121.52392 * 179.97438 * 5 4 2 7 7 O 1.35284 * 120.89299 * 179.97438 * 6 5 4 8 8 C 1.41418 * 118.21516 * 359.97438 * 6 5 4 9 9 C 1.40007 * 122.12768 * 180.02562 * 8 6 5 10 10 C 1.36350 * 119.49843 * 179.97438 * 9 8 6 11 11 C 1.39240 * 120.90629 * 0.02562 * 10 9 8 12 12 C 1.36293 * 121.04373 * 359.96001 * 11 10 9 13 13 C 1.40176 * 119.58409 * 0.03524 * 12 11 10 14 14 N 1.31149 * 118.52788 * 254.73269 * 4 2 1 15 15 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 16 16 C 1.47849 * 110.99874 * 180.84330 * 15 2 1 17 17 C 1.54909 * 104.79539 * 213.63861 * 16 15 2 18 18 C 1.55145 * 101.65657 * 37.06926 * 17 16 15 19 19 O 1.42900 * 110.70561 * 82.72455 * 18 17 16 20 20 C 1.50699 * 110.70547 * 205.96788 * 18 17 16 21 21 H 1.07995 * 120.00124 * 113.59704 * 20 18 17 22 22 C 1.37877 * 119.99656 * 293.59225 * 20 18 17 23 23 N 1.31518 * 119.99967 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 119.99714 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47213 * 60.00478 * 24 22 20 26 26 H 1.48503 * 109.47099 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47139 * 300.00325 * 24 22 20 28 28 C 1.47442 * 111.00096 * 60.00073 * 15 2 1 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 0.96695 * 114.00461 * 89.99430 * 7 6 5 33 33 H 1.08007 * 120.25205 * 0.02562 * 9 8 6 34 34 H 1.07995 * 119.54529 * 179.97438 * 10 9 8 35 35 H 1.08000 * 119.47940 * 179.97438 * 11 10 9 36 36 H 1.07999 * 120.21153 * 180.02562 * 12 11 10 37 37 H 1.09004 * 110.37161 * 332.46154 * 16 15 2 38 38 H 1.08994 * 110.37538 * 94.80874 * 16 15 2 39 39 H 1.09004 * 110.99115 * 278.97371 * 17 16 15 40 40 H 1.09000 * 110.99273 * 155.15906 * 17 16 15 41 41 H 0.96703 * 113.99241 * 66.40933 * 19 18 17 42 42 H 0.97002 * 119.99532 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.89034 * 242.65897 * 28 15 2 44 44 H 1.09002 * 109.88877 * 3.85145 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.9592 -2.0319 1.2719 6 6 2.3835 -2.7161 2.3229 7 8 2.3023 -4.0662 2.3518 8 6 2.9240 -1.9977 3.4146 9 6 3.3971 -2.6380 4.5663 10 6 3.9082 -1.8924 5.5871 11 6 3.9652 -0.5039 5.4996 12 6 3.5133 0.1498 4.3923 13 6 2.9815 -0.5852 3.3237 14 7 2.5272 0.0076 2.2101 15 7 2.0196 -0.6925 -1.1994 16 6 3.4974 -0.7298 -1.2235 17 6 3.8711 -0.6369 -2.7240 18 6 2.7946 0.3462 -3.2548 19 8 3.1814 1.6998 -3.0088 20 6 2.5446 0.1203 -4.7236 21 1 1.5879 -0.2534 -5.0573 22 6 3.5373 0.3908 -5.6414 23 7 4.7025 0.8455 -5.2350 24 14 3.2271 0.1114 -7.4622 25 1 2.0888 0.9557 -7.9057 26 1 4.4433 0.4748 -8.2330 27 1 2.9029 -1.3189 -7.6953 28 6 1.5468 -0.0239 -2.4256 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.0828 -4.5149 1.9990 33 1 3.3584 -3.7145 4.6452 34 1 4.2730 -2.3855 6.4759 35 1 4.3743 0.0641 6.3221 36 1 3.5644 1.2272 4.3386 37 1 3.9074 0.1196 -0.6771 38 1 3.8603 -1.6660 -0.7994 39 1 3.7848 -1.6094 -3.2088 40 1 4.8724 -0.2259 -2.8523 41 1 3.9611 1.9825 -3.5061 42 1 5.4010 1.0354 -5.8807 43 1 0.9105 -0.7010 -2.9954 44 1 0.9931 0.8784 -2.1660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:44 Heat of formation + Delta-G solvation = -6.946071 kcal Electronic energy + Delta-G solvation = -28370.994876 eV Core-core repulsion = 24482.007468 eV Total energy + Delta-G solvation = -3888.987408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 4.26 seconds Orbital eigenvalues (eV) -41.59758 -38.87096 -38.17300 -37.50759 -35.01971 -33.28867 -32.27077 -32.04335 -31.30598 -29.95666 -28.24620 -27.58361 -25.38032 -24.65564 -24.08603 -22.42459 -21.68907 -20.27686 -19.25115 -18.99369 -18.45854 -17.87391 -17.10716 -16.30753 -15.82586 -15.37832 -14.94027 -14.85209 -14.80334 -14.40185 -14.23033 -13.94909 -13.53535 -13.33559 -12.76120 -12.73739 -12.37631 -12.31827 -12.05586 -11.86461 -11.76989 -11.58205 -11.24524 -11.18400 -11.16831 -10.89103 -10.86643 -10.54522 -10.46464 -10.45440 -10.22138 -9.89379 -9.42603 -9.25375 -9.22043 -8.59208 -8.48892 -8.07309 -7.60013 -6.19029 -4.25882 0.01353 0.54548 1.61791 2.74159 3.15749 3.26468 3.30891 3.34214 3.77095 3.87257 4.16403 4.32832 4.39772 4.55289 4.65898 4.75571 4.91583 5.05517 5.08140 5.25155 5.42916 5.52243 5.66338 5.68148 5.71951 5.84662 5.90507 6.06981 6.07374 6.12287 6.13812 6.16783 6.31217 6.41500 6.47047 6.48532 6.57566 6.94737 6.98342 7.08787 7.16201 7.43715 7.49759 7.66359 7.75086 7.85307 8.15235 8.17669 8.75317 9.41889 9.54958 10.88219 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022397 B = 0.002953 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.858144 B = 9479.712625 C = 9601.564126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.142 3.858 3 H 0.072 0.928 4 C 0.372 3.628 5 N -0.503 5.503 6 C 0.398 3.602 7 O -0.470 6.470 8 C -0.184 4.184 9 C -0.067 4.067 10 C -0.131 4.131 11 C -0.080 4.080 12 C -0.103 4.103 13 C 0.173 3.827 14 N -0.512 5.512 15 N -0.508 5.508 16 C 0.044 3.956 17 C -0.128 4.128 18 C 0.237 3.763 19 O -0.592 6.592 20 C -0.530 4.530 21 H 0.063 0.937 22 C 0.069 3.931 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 C 0.058 3.942 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.410 0.590 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.034 0.966 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.383 0.617 42 H 0.267 0.733 43 H 0.083 0.917 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.449 -5.770 20.289 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 H 0.090 0.910 4 C 0.103 3.897 5 N -0.226 5.226 6 C 0.196 3.804 7 O -0.278 6.278 8 C -0.190 4.190 9 C -0.087 4.087 10 C -0.149 4.149 11 C -0.102 4.102 12 C -0.122 4.122 13 C 0.046 3.954 14 N -0.228 5.228 15 N -0.233 5.233 16 C -0.084 4.084 17 C -0.167 4.167 18 C 0.196 3.804 19 O -0.402 6.402 20 C -0.568 4.568 21 H 0.081 0.919 22 C -0.133 4.133 23 N -0.540 5.540 24 Si 0.729 3.271 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.201 1.201 28 C -0.068 4.068 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.271 0.729 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.235 0.765 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.830 -5.590 20.116 20.958 hybrid contribution 1.559 -0.076 -0.796 1.752 sum -0.271 -5.666 19.320 20.136 Atomic orbital electron populations 1.21849 0.92596 1.03163 1.02098 1.20544 0.95961 0.94713 0.85684 0.91032 1.22938 0.88520 0.84725 0.93498 1.67843 1.18289 1.10169 1.26342 1.19727 0.88077 0.85091 0.87529 1.84596 1.46096 1.12729 1.84416 1.19652 1.05483 0.95524 0.98318 1.20870 0.95721 1.00426 0.91704 1.20962 1.00601 0.94053 0.99254 1.21041 0.96954 0.94628 0.97539 1.20774 0.98843 1.00767 0.91812 1.18938 0.94417 0.89180 0.92896 1.68660 1.13366 1.39844 1.00894 1.63739 1.09271 1.49897 1.00387 1.23016 0.87317 0.98509 0.99517 1.23153 1.01278 1.01100 0.91171 1.19709 0.88443 0.79748 0.92464 1.86077 1.52603 1.30175 1.71337 1.21570 0.99846 1.44113 0.91317 0.91900 1.25012 0.94694 0.94051 0.99494 1.69590 1.04130 1.45368 1.34961 0.86507 0.77624 0.78785 0.84207 1.20098 1.21251 1.20103 1.22906 0.98234 0.96479 0.89223 0.92732 0.90784 0.91188 0.72917 0.84589 0.85179 0.84889 0.84079 0.94800 0.92745 0.91750 0.91008 0.76488 0.92274 0.89862 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.04 37.16 0.34 -1.84 16 2 C 0.14 2.58 2.04 -68.87 -0.14 2.44 16 3 H 0.07 1.40 8.07 -51.93 -0.42 0.98 16 4 C 0.37 6.49 5.59 -157.21 -0.88 5.61 16 5 N -0.50 -8.49 10.05 -10.40 -0.10 -8.59 16 6 C 0.40 5.52 7.89 -16.10 -0.13 5.40 16 7 O -0.47 -5.06 12.94 -17.54 -0.23 -5.29 16 8 C -0.18 -2.35 5.75 -106.72 -0.61 -2.97 16 9 C -0.07 -0.62 9.61 -39.60 -0.38 -1.00 16 10 C -0.13 -1.01 9.96 -39.89 -0.40 -1.40 16 11 C -0.08 -0.65 9.95 -39.91 -0.40 -1.05 16 12 C -0.10 -1.14 10.01 -39.55 -0.40 -1.53 16 13 C 0.17 2.47 6.61 -84.85 -0.56 1.91 16 14 N -0.51 -8.57 10.30 -8.80 -0.09 -8.66 16 15 N -0.51 -10.26 4.82 -224.67 -1.08 -11.34 16 16 C 0.04 0.93 5.83 -2.29 -0.01 0.91 16 17 C -0.13 -3.04 5.66 -24.59 -0.14 -3.18 16 18 C 0.24 5.92 0.86 -89.94 -0.08 5.84 16 19 O -0.59 -15.56 13.09 -35.23 -0.46 -16.02 16 20 C -0.53 -14.21 8.21 -34.44 -0.28 -14.50 16 21 H 0.06 1.66 7.53 -52.49 -0.40 1.27 16 22 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 23 N -0.90 -24.15 10.69 55.43 0.59 -23.56 16 24 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 C 0.06 1.28 5.49 -2.83 -0.02 1.27 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.13 6.50 -51.93 -0.34 0.79 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.41 2.40 9.06 45.56 0.41 2.81 16 33 H 0.14 0.94 7.73 -52.48 -0.41 0.54 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.03 0.74 7.77 -51.93 -0.40 0.34 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.57 8.04 -51.93 -0.42 1.15 16 40 H 0.07 1.80 7.76 -51.93 -0.40 1.39 16 41 H 0.38 10.32 6.99 45.56 0.32 10.64 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.08 1.82 7.63 -51.93 -0.40 1.42 16 44 H 0.05 1.11 6.28 -51.93 -0.33 0.79 16 LS Contribution 360.79 15.07 5.44 5.44 Total: -1.00 -31.28 360.79 -9.58 -40.86 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -4.44 Total: 13.80 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -4.18 Total: -2.36 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.68 Total: -52.16 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.69 Total: -21.31 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.28 -9.58 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.910 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.26 seconds