Wall clock time and date at job start Tue Mar 31 2020 17:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 5 5 N 1.32413 * 118.52678 * 74.99921 * 4 2 1 6 6 C 1.32398 * 121.52392 * 179.97438 * 5 4 2 7 7 O 1.35284 * 120.89299 * 179.97438 * 6 5 4 8 8 C 1.41418 * 118.21516 * 359.97438 * 6 5 4 9 9 C 1.40007 * 122.12768 * 180.02562 * 8 6 5 10 10 C 1.36350 * 119.49843 * 179.97438 * 9 8 6 11 11 C 1.39240 * 120.90629 * 0.02562 * 10 9 8 12 12 C 1.36293 * 121.04373 * 359.96001 * 11 10 9 13 13 C 1.40176 * 119.58409 * 0.03524 * 12 11 10 14 14 N 1.31149 * 118.52788 * 254.73269 * 4 2 1 15 15 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 16 16 C 1.47849 * 110.99874 * 180.84330 * 15 2 1 17 17 C 1.54909 * 104.79539 * 213.63861 * 16 15 2 18 18 C 1.55145 * 101.65657 * 37.06926 * 17 16 15 19 19 O 1.42900 * 110.70561 * 82.72455 * 18 17 16 20 20 C 1.50699 * 110.70547 * 205.96788 * 18 17 16 21 21 H 1.07995 * 120.00124 * 113.59704 * 20 18 17 22 22 C 1.37877 * 119.99656 * 293.59225 * 20 18 17 23 23 N 1.31518 * 119.99967 * 0.02562 * 22 20 18 24 24 Si 1.86799 * 119.99714 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47213 * 60.00478 * 24 22 20 26 26 H 1.48503 * 109.47099 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47139 * 300.00325 * 24 22 20 28 28 C 1.47442 * 111.00096 * 60.00073 * 15 2 1 29 29 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 30 30 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 0.96695 * 114.00461 * 89.99430 * 7 6 5 33 33 H 1.08007 * 120.25205 * 0.02562 * 9 8 6 34 34 H 1.07995 * 119.54529 * 179.97438 * 10 9 8 35 35 H 1.08000 * 119.47940 * 179.97438 * 11 10 9 36 36 H 1.07999 * 120.21153 * 180.02562 * 12 11 10 37 37 H 1.09004 * 110.37161 * 332.46154 * 16 15 2 38 38 H 1.08994 * 110.37538 * 94.80874 * 16 15 2 39 39 H 1.09004 * 110.99115 * 278.97371 * 17 16 15 40 40 H 1.09000 * 110.99273 * 155.15906 * 17 16 15 41 41 H 0.96703 * 113.99241 * 66.40933 * 19 18 17 42 42 H 0.97002 * 119.99532 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.89034 * 242.65897 * 28 15 2 44 44 H 1.09002 * 109.88877 * 3.85145 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.9592 -2.0319 1.2719 6 6 2.3835 -2.7161 2.3229 7 8 2.3023 -4.0662 2.3518 8 6 2.9240 -1.9977 3.4146 9 6 3.3971 -2.6380 4.5663 10 6 3.9082 -1.8924 5.5871 11 6 3.9652 -0.5039 5.4996 12 6 3.5133 0.1498 4.3923 13 6 2.9815 -0.5852 3.3237 14 7 2.5272 0.0076 2.2101 15 7 2.0196 -0.6925 -1.1994 16 6 3.4974 -0.7298 -1.2235 17 6 3.8711 -0.6369 -2.7240 18 6 2.7946 0.3462 -3.2548 19 8 3.1814 1.6998 -3.0088 20 6 2.5446 0.1203 -4.7236 21 1 1.5879 -0.2534 -5.0573 22 6 3.5373 0.3908 -5.6414 23 7 4.7025 0.8455 -5.2350 24 14 3.2271 0.1114 -7.4622 25 1 2.0888 0.9557 -7.9057 26 1 4.4433 0.4748 -8.2330 27 1 2.9029 -1.3189 -7.6953 28 6 1.5468 -0.0239 -2.4256 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.0828 -4.5149 1.9990 33 1 3.3584 -3.7145 4.6452 34 1 4.2730 -2.3855 6.4759 35 1 4.3743 0.0641 6.3221 36 1 3.5644 1.2272 4.3386 37 1 3.9074 0.1196 -0.6771 38 1 3.8603 -1.6660 -0.7994 39 1 3.7848 -1.6094 -3.2088 40 1 4.8724 -0.2259 -2.8523 41 1 3.9611 1.9825 -3.5061 42 1 5.4010 1.0354 -5.8807 43 1 0.9105 -0.7010 -2.9954 44 1 0.9931 0.8784 -2.1660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:43 Heat of formation + Delta-G solvation = -33.191248 kcal Electronic energy + Delta-G solvation = -28372.132952 eV Core-core repulsion = 24482.007468 eV Total energy + Delta-G solvation = -3890.125484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.59446 -40.43743 -39.02605 -38.67997 -36.74358 -34.27975 -34.12241 -33.77934 -32.20187 -31.00380 -30.09196 -29.21268 -26.96529 -25.66832 -25.44550 -23.29023 -23.08791 -21.94764 -21.00951 -20.01609 -19.51506 -19.13174 -18.71856 -17.37282 -17.17606 -16.92275 -16.39001 -16.30685 -15.85736 -15.69425 -15.54505 -15.09915 -14.99704 -14.80783 -14.38173 -13.91100 -13.60647 -13.57643 -13.33363 -13.20839 -13.09778 -13.04862 -12.81925 -12.72079 -12.64351 -12.45229 -12.37134 -12.28538 -12.06319 -11.87994 -11.86557 -11.47486 -11.16800 -10.62260 -10.32808 -10.28092 -10.10747 -9.35602 -9.28514 -8.21358 -6.36146 -0.88892 -0.37262 0.75717 1.43418 1.43931 1.51928 1.85423 2.22100 2.39360 2.61266 2.89315 3.02996 3.09285 3.34420 3.55705 3.72520 3.84654 3.97988 4.08433 4.08782 4.21859 4.25900 4.33976 4.35482 4.40734 4.47130 4.55906 4.65105 4.74757 4.79252 4.91955 4.94585 5.08228 5.13716 5.17891 5.22182 5.24938 5.37725 5.45481 5.50210 5.69099 5.79686 5.88034 5.98743 6.12708 6.17254 6.43295 6.68202 7.05618 7.34260 7.43337 8.84245 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022397 B = 0.002953 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.858144 B = 9479.712625 C = 9601.564126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.142 3.858 3 H 0.051 0.949 4 C 0.353 3.647 5 N -0.538 5.538 6 C 0.398 3.602 7 O -0.468 6.468 8 C -0.192 4.192 9 C -0.070 4.070 10 C -0.115 4.115 11 C -0.060 4.060 12 C -0.126 4.126 13 C 0.141 3.859 14 N -0.535 5.535 15 N -0.502 5.502 16 C 0.062 3.938 17 C -0.119 4.119 18 C 0.222 3.778 19 O -0.599 6.599 20 C -0.555 4.555 21 H 0.060 0.940 22 C 0.027 3.973 23 N -0.917 5.917 24 Si 0.963 3.037 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.271 1.271 28 C 0.067 3.933 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.431 0.569 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.172 0.828 36 H 0.143 0.857 37 H 0.021 0.979 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.377 0.623 42 H 0.269 0.731 43 H 0.084 0.916 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -7.196 22.808 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.032 3.968 3 H 0.069 0.931 4 C 0.084 3.916 5 N -0.263 5.263 6 C 0.197 3.803 7 O -0.279 6.279 8 C -0.198 4.198 9 C -0.091 4.091 10 C -0.133 4.133 11 C -0.081 4.081 12 C -0.145 4.145 13 C 0.015 3.985 14 N -0.251 5.251 15 N -0.227 5.227 16 C -0.065 4.065 17 C -0.158 4.158 18 C 0.182 3.818 19 O -0.408 6.408 20 C -0.593 4.593 21 H 0.078 0.922 22 C -0.173 4.173 23 N -0.557 5.557 24 Si 0.788 3.212 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.061 4.061 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.295 0.705 33 H 0.180 0.820 34 H 0.190 0.810 35 H 0.189 0.811 36 H 0.161 0.839 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.228 0.772 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.426 -7.041 22.663 23.774 hybrid contribution 1.536 0.318 -1.343 2.065 sum 0.110 -6.723 21.320 22.355 Atomic orbital electron populations 1.21774 0.90938 1.03187 1.02847 1.20502 0.97333 0.93546 0.85466 0.93135 1.22486 0.90389 0.85211 0.93519 1.67729 1.20371 1.09982 1.28175 1.19913 0.87186 0.85939 0.87234 1.84559 1.47552 1.11283 1.84518 1.19839 1.05690 0.94990 0.99266 1.21233 0.95214 1.01930 0.90680 1.21509 0.98140 0.93812 0.99801 1.21545 0.94210 0.95314 0.97010 1.20982 1.00144 1.01147 0.92245 1.19407 0.95586 0.90476 0.93042 1.68565 1.14006 1.40686 1.01885 1.63735 1.08383 1.49910 1.00677 1.22786 0.88040 0.98395 0.97315 1.22957 0.99961 1.00016 0.92889 1.19951 0.89969 0.79232 0.92637 1.86077 1.52292 1.31214 1.71246 1.21840 1.00047 1.44901 0.92537 0.92161 1.25732 0.94457 0.93693 1.03386 1.69683 1.04572 1.45369 1.36102 0.85536 0.77531 0.78710 0.79377 1.19847 1.20736 1.19664 1.22778 0.96985 0.96645 0.89665 0.91248 0.90674 0.91408 0.70519 0.81992 0.80989 0.81079 0.83912 0.96075 0.91793 0.92707 0.92908 0.77213 0.92133 0.89764 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.04 71.98 0.65 -3.50 16 2 C 0.14 5.38 2.04 44.17 0.09 5.47 16 3 H 0.05 2.10 8.07 -2.39 -0.02 2.08 16 4 C 0.35 12.73 5.59 138.76 0.78 13.51 16 5 N -0.54 -18.42 10.05 -299.84 -3.01 -21.43 16 6 C 0.40 10.82 7.89 85.39 0.67 11.50 16 7 O -0.47 -9.34 12.94 -85.69 -1.11 -10.45 16 8 C -0.19 -4.67 5.75 -21.22 -0.12 -4.79 16 9 C -0.07 -1.06 9.61 22.26 0.21 -0.85 16 10 C -0.12 -1.21 9.96 22.07 0.22 -0.99 16 11 C -0.06 -0.74 9.95 22.06 0.22 -0.52 16 12 C -0.13 -2.60 10.01 22.29 0.22 -2.38 16 13 C 0.14 3.98 6.61 40.12 0.27 4.25 16 14 N -0.54 -18.52 10.30 -181.75 -1.87 -20.40 16 15 N -0.50 -20.92 4.82 -864.73 -4.16 -25.08 16 16 C 0.06 2.73 5.83 86.77 0.51 3.23 16 17 C -0.12 -5.87 5.66 31.98 0.18 -5.68 16 18 C 0.22 11.46 0.86 -10.35 -0.01 11.45 16 19 O -0.60 -32.65 13.09 -148.98 -1.95 -34.60 16 20 C -0.55 -30.35 8.21 25.60 0.21 -30.14 16 21 H 0.06 3.24 7.53 -2.91 -0.02 3.22 16 22 C 0.03 1.46 5.28 84.65 0.45 1.90 16 23 N -0.92 -50.06 10.69 21.45 0.23 -49.84 16 24 Si 0.96 42.74 29.54 68.60 2.03 44.77 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.07 3.01 5.49 86.65 0.48 3.48 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.07 2.34 6.50 -2.39 -0.02 2.32 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.43 4.25 9.06 -74.06 -0.67 3.58 16 33 H 0.16 1.55 7.73 -2.91 -0.02 1.52 16 34 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 35 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.02 0.97 7.77 -2.38 -0.02 0.95 16 38 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.05 2.75 8.04 -2.38 -0.02 2.73 16 40 H 0.05 2.75 7.76 -2.39 -0.02 2.73 16 41 H 0.38 21.13 6.99 -74.06 -0.52 20.61 16 42 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.08 3.75 7.63 -2.39 -0.02 3.73 16 44 H 0.05 2.37 6.28 -2.39 -0.01 2.35 16 Total: -1.00 -70.17 360.79 -4.97 -75.14 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.14 Total: 35.94 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.02 Total: 5.95 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -8.82 Total: -116.75 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -3.06 Total: -45.05 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -70.17 -4.97 -75.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.948 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds