Wall clock time and date at job start Tue Mar 31 2020 18:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47098 * 2 1 4 4 C 1.50695 * 109.47135 * 120.00250 * 2 1 3 5 5 O 1.21284 * 119.99587 * 120.00297 * 4 2 1 6 6 N 1.34768 * 120.00168 * 299.99638 * 4 2 1 7 7 C 1.47425 * 125.64888 * 0.03091 * 6 4 2 8 8 C 1.54911 * 104.83457 * 204.08840 * 7 6 4 9 9 C 1.55154 * 101.57659 * 322.98988 * 8 7 6 10 10 O 1.42902 * 110.72147 * 277.13328 * 9 8 7 11 11 C 1.50703 * 110.71787 * 154.04588 * 9 8 7 12 12 H 1.08001 * 119.99877 * 238.12259 * 11 9 8 13 13 C 1.37878 * 120.00587 * 58.11981 * 11 9 8 14 14 N 1.31516 * 119.99656 * 6.08838 * 13 11 9 15 15 Si 1.86790 * 120.00289 * 186.09412 * 13 11 9 16 16 H 1.48499 * 109.47472 * 94.98602 * 15 13 11 17 17 H 1.48507 * 109.47262 * 214.98623 * 15 13 11 18 18 H 1.48497 * 109.47399 * 334.98375 * 15 13 11 19 19 C 1.47022 * 125.65240 * 179.71419 * 6 4 2 20 20 N 1.46504 * 109.46781 * 240.00466 * 2 1 3 21 21 C 1.36039 * 126.35104 * 300.35944 * 20 2 1 22 22 N 1.30104 * 110.09808 * 180.02562 * 21 20 2 23 23 C 1.35783 * 109.64913 * 359.78204 * 22 21 20 24 24 C 1.39735 * 133.60458 * 180.02562 * 23 22 21 25 25 C 1.36609 * 119.88725 * 180.02562 * 24 23 22 26 26 C 1.38785 * 120.66522 * 359.97438 * 25 24 23 27 27 C 1.37850 * 120.45202 * 0.03588 * 26 25 24 28 28 C 1.38054 * 126.34933 * 120.00190 * 20 2 1 29 29 H 1.08998 * 109.46976 * 299.99962 * 1 2 3 30 30 H 1.09006 * 109.46894 * 60.00076 * 1 2 3 31 31 H 1.09000 * 109.46734 * 179.97438 * 1 2 3 32 32 H 1.09004 * 110.36195 * 322.92568 * 7 6 4 33 33 H 1.08999 * 110.37166 * 85.13627 * 7 6 4 34 34 H 1.08998 * 111.00300 * 81.06064 * 8 7 6 35 35 H 1.08994 * 111.00579 * 204.91846 * 8 7 6 36 36 H 0.96698 * 114.00133 * 298.55607 * 10 9 8 37 37 H 0.96998 * 120.00136 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.88146 * 298.40438 * 19 6 4 39 39 H 1.09005 * 109.87647 * 59.56011 * 19 6 4 40 40 H 1.08001 * 124.94518 * 359.82211 * 21 20 2 41 41 H 1.08003 * 120.06101 * 359.97438 * 24 23 22 42 42 H 1.07991 * 119.67032 * 179.97438 * 25 24 23 43 43 H 1.07997 * 119.77037 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.15236 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1190 6 7 1.7069 -0.2500 2.4545 7 6 0.8707 0.9316 2.7337 8 6 1.2944 1.3914 4.1510 9 6 1.5388 0.0327 4.8590 10 8 0.3094 -0.5163 5.3379 11 6 2.5257 0.1893 5.9872 12 1 3.4371 -0.3901 5.9917 13 6 2.2651 1.0723 7.0136 14 7 1.1047 1.6885 7.0721 15 14 3.5601 1.3934 8.3209 16 1 4.3437 2.6007 7.9554 17 1 2.8969 1.6118 9.6315 18 1 4.4691 0.2230 8.4152 19 6 2.1215 -0.8467 3.7326 20 7 2.0183 -0.6905 -1.1963 21 6 1.7649 -1.9817 -1.5419 22 7 2.3552 -2.2678 -2.6655 23 6 3.0243 -1.1773 -3.1204 24 6 3.8082 -0.9296 -4.2503 25 6 4.3636 0.3045 -4.4363 26 6 4.1575 1.3199 -3.5129 27 6 3.3880 1.0983 -2.3909 28 6 2.8152 -0.1496 -2.1853 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.0690 1.7174 2.0047 33 1 -0.1851 0.6609 2.7207 34 1 2.2096 1.9822 4.1127 35 1 0.4927 1.9468 4.6375 36 1 -0.1395 0.0361 5.9924 37 1 0.9211 2.3094 7.7944 38 1 1.7310 -1.8613 3.8120 39 1 3.2094 -0.8597 3.8000 40 1 1.1643 -2.6699 -0.9657 41 1 3.9754 -1.7128 -4.9750 42 1 4.9692 0.4919 -5.3106 43 1 4.6032 2.2903 -3.6745 44 1 3.2304 1.8920 -1.6757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592836708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:36 Heat of formation + Delta-G solvation = 1.379492 kcal Electronic energy + Delta-G solvation = -28243.436698 eV Core-core repulsion = 24354.810313 eV Total energy + Delta-G solvation = -3888.626385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.26403 -39.89155 -37.75114 -37.14223 -35.00653 -34.47553 -32.35484 -31.69853 -29.99487 -29.48372 -29.22881 -28.33526 -25.71827 -24.59770 -23.27933 -22.56605 -22.15178 -21.00648 -19.83744 -19.02753 -17.64954 -17.26366 -17.13291 -16.65372 -15.85082 -15.54343 -15.40119 -15.15948 -14.97656 -14.44105 -14.22491 -14.00053 -13.82722 -13.61308 -13.18434 -13.15188 -12.82388 -12.31937 -12.23234 -12.16831 -12.09443 -11.72747 -11.70796 -11.52728 -11.46980 -11.36209 -10.97812 -10.81615 -10.62069 -10.56177 -10.25620 -9.96339 -9.68988 -9.49832 -8.76510 -8.40486 -8.37720 -8.29951 -8.14201 -6.41261 -4.48024 0.92944 1.45647 2.33586 2.62125 2.81059 3.12214 3.20885 3.23540 3.29316 3.84777 4.17534 4.23872 4.29962 4.50401 4.55405 4.56734 4.86943 4.88628 4.95357 5.21678 5.23963 5.31947 5.35876 5.38910 5.47986 5.53446 5.62015 5.66450 5.70351 5.84782 5.99168 6.06192 6.25709 6.37034 6.42897 6.45466 6.48849 6.68735 6.73895 6.80660 7.05726 7.12340 7.19135 7.61339 7.76568 7.87731 7.88534 8.22981 8.55066 9.16408 9.28095 10.66638 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.002839 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.401500 B = 9859.091983 C =10243.707144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 H 0.121 0.879 4 C 0.510 3.490 5 O -0.536 6.536 6 N -0.599 5.599 7 C 0.089 3.911 8 C -0.136 4.136 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.537 4.537 12 H 0.065 0.935 13 C 0.074 3.926 14 N -0.894 5.894 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.123 3.877 20 N -0.473 5.473 21 C 0.294 3.706 22 N -0.504 5.504 23 C 0.049 3.951 24 C -0.067 4.067 25 C -0.131 4.131 26 C -0.107 4.107 27 C -0.109 4.109 28 C 0.048 3.952 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.383 0.617 37 H 0.269 0.731 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.207 0.793 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 3.369 -16.249 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 H 0.139 0.861 4 C 0.296 3.704 5 O -0.413 6.413 6 N -0.331 5.331 7 C -0.034 4.034 8 C -0.174 4.174 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.575 4.575 12 H 0.083 0.917 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.196 1.196 19 C 0.002 3.998 20 N -0.162 5.162 21 C 0.009 3.991 22 N -0.223 5.223 23 C -0.069 4.069 24 C -0.086 4.086 25 C -0.152 4.152 26 C -0.127 4.127 27 C -0.130 4.130 28 C -0.061 4.061 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.234 0.766 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.224 0.776 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.164 1.738 -16.981 17.109 hybrid contribution 0.500 1.559 1.805 2.437 sum -0.664 3.297 -15.176 15.544 Atomic orbital electron populations 1.22303 0.90870 1.04492 1.04785 1.21190 0.96929 0.97464 0.82550 0.86129 1.20014 0.81560 0.85258 0.83615 1.90752 1.38313 1.26416 1.85859 1.48577 1.49898 1.29380 1.05293 1.22710 0.94596 0.86328 0.99730 1.23323 1.02202 1.00649 0.91253 1.19475 0.83548 0.86572 0.89605 1.86137 1.38115 1.52247 1.63019 1.21483 1.05487 1.23921 1.06642 0.91714 1.24972 0.95640 0.94721 0.97571 1.69686 1.21552 1.28854 1.33213 0.86397 0.81328 0.78786 0.80497 1.20461 1.20959 1.19618 1.22144 0.99511 0.97537 0.80598 1.45086 1.41558 1.11747 1.17831 1.25165 0.97623 0.83738 0.92601 1.70507 1.14150 1.26596 1.11027 1.19080 1.01445 0.89767 0.96617 1.19993 0.96094 0.97297 0.95229 1.20606 1.01557 0.92915 1.00104 1.20832 0.98697 0.99390 0.93775 1.19967 0.99981 0.93713 0.99298 1.18898 0.98802 0.96826 0.91552 0.88725 0.90605 0.90970 0.92044 0.91165 0.91285 0.89063 0.76629 0.92127 0.91751 0.90755 0.77605 0.85547 0.85564 0.85434 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.05 37.16 0.34 -1.29 16 2 C 0.13 1.58 2.75 -69.08 -0.19 1.39 16 3 H 0.12 1.32 7.33 -51.93 -0.38 0.94 16 4 C 0.51 8.55 7.18 -10.99 -0.08 8.47 16 5 O -0.54 -10.95 15.82 5.55 0.09 -10.86 16 6 N -0.60 -10.41 3.32 -170.52 -0.57 -10.98 16 7 C 0.09 1.35 5.13 -2.53 -0.01 1.34 16 8 C -0.14 -2.62 5.43 -24.58 -0.13 -2.75 16 9 C 0.25 5.52 0.85 -89.94 -0.08 5.45 16 10 O -0.59 -13.60 13.06 -35.23 -0.46 -14.06 16 11 C -0.54 -13.34 8.22 -34.44 -0.28 -13.62 16 12 H 0.06 1.64 7.63 -52.49 -0.40 1.24 16 13 C 0.07 1.81 5.24 -17.82 -0.09 1.71 16 14 N -0.89 -21.66 10.71 55.43 0.59 -21.07 16 15 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 19 C 0.12 2.57 6.23 -3.06 -0.02 2.55 16 20 N -0.47 -6.67 2.44 -109.93 -0.27 -6.94 16 21 C 0.29 4.31 10.71 -89.79 -0.96 3.35 16 22 N -0.50 -8.13 11.27 -12.05 -0.14 -8.27 16 23 C 0.05 0.75 7.23 -84.70 -0.61 0.13 16 24 C -0.07 -0.83 10.05 -39.61 -0.40 -1.22 16 25 C -0.13 -1.34 9.96 -39.97 -0.40 -1.74 16 26 C -0.11 -1.09 10.03 -39.52 -0.40 -1.48 16 27 C -0.11 -1.29 9.89 -39.50 -0.39 -1.68 16 28 C 0.05 0.69 6.87 -83.99 -0.58 0.11 16 29 H 0.09 0.88 4.99 -51.93 -0.26 0.62 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.71 7.94 -51.93 -0.41 0.30 16 32 H 0.06 0.74 7.36 -51.93 -0.38 0.36 16 33 H 0.07 1.00 7.07 -51.93 -0.37 0.63 16 34 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 35 H 0.09 1.83 7.53 -51.93 -0.39 1.44 16 36 H 0.38 8.92 7.52 45.56 0.34 9.26 16 37 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 38 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 39 H 0.07 1.61 7.69 -51.93 -0.40 1.21 16 40 H 0.21 2.54 8.06 -52.49 -0.42 2.12 16 41 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 1.19 7.76 -52.49 -0.41 0.78 16 LS Contribution 359.92 15.07 5.42 5.42 Total: -1.00 -29.72 359.92 -9.77 -39.49 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.14 Total: 12.09 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -4.29 Total: 0.71 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.38 Total: -47.25 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.37 Total: -24.92 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.72 -9.77 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592836708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.869 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds