Wall clock time and date at job start Tue Mar 31 2020 16:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.46051 * 2 1 4 4 C 1.53039 * 109.46026 * 240.02887 * 2 1 3 5 5 C 1.53191 * 109.31254 * 178.61717 * 4 2 1 6 6 N 1.46928 * 108.77795 * 54.63493 * 5 4 2 7 7 C 1.36939 * 120.62888 * 126.41347 * 6 5 4 8 8 H 1.08001 * 119.99390 * 207.67289 * 7 6 5 9 9 C 1.38801 * 120.00170 * 27.67883 * 7 6 5 10 10 N 1.31615 * 120.00516 * 17.35380 * 9 7 6 11 11 Si 1.86805 * 119.99852 * 197.35749 * 9 7 6 12 12 H 1.48495 * 109.47241 * 59.99763 * 11 9 7 13 13 H 1.48500 * 109.47147 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46817 * 299.99675 * 11 9 7 15 15 C 1.46929 * 118.73642 * 306.39255 * 6 5 4 16 16 C 1.53039 * 109.45875 * 119.97288 * 2 1 3 17 17 H 1.08999 * 109.49659 * 61.43367 * 16 2 1 18 18 N 1.46497 * 109.50157 * 301.33771 * 16 2 1 19 19 C 1.34775 * 120.00291 * 154.99847 * 18 16 2 20 20 O 1.21569 * 120.00021 * 0.02562 * 19 18 16 21 21 C 1.47786 * 119.99911 * 180.02562 * 19 18 16 22 22 N 1.32814 * 120.07505 * 359.97438 * 21 19 18 23 23 C 1.31674 * 122.01722 * 179.97438 * 22 21 19 24 24 C 1.38397 * 121.69533 * 359.97438 * 23 22 21 25 25 C 1.38862 * 119.13315 * 0.02635 * 24 23 22 26 26 O 1.34421 * 134.62843 * 180.02562 * 25 24 23 27 27 C 1.34458 * 110.84850 * 179.32097 * 26 25 24 28 28 C 1.34305 * 110.16394 * 0.59487 * 27 26 25 29 29 C 1.40200 * 120.07095 * 179.72349 * 21 19 18 30 30 H 1.08999 * 109.47693 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47426 * 300.00163 * 1 2 3 32 32 H 1.09003 * 109.47179 * 59.99373 * 1 2 3 33 33 H 1.08998 * 109.49791 * 298.56345 * 4 2 1 34 34 H 1.09003 * 109.49903 * 58.66534 * 4 2 1 35 35 H 1.09004 * 109.59029 * 174.42189 * 5 4 2 36 36 H 1.09004 * 109.58905 * 294.70450 * 5 4 2 37 37 H 0.97001 * 120.00592 * 180.02562 * 10 9 7 38 38 H 1.08995 * 109.58101 * 173.39574 * 15 6 5 39 39 H 1.08997 * 109.58232 * 293.67809 * 15 6 5 40 40 H 0.97000 * 119.99745 * 334.99828 * 18 16 2 41 41 H 1.08000 * 119.14860 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.43051 * 180.02562 * 24 23 22 43 43 H 1.07995 * 124.91561 * 180.09260 * 27 26 25 44 44 H 1.08000 * 126.88867 * 179.48406 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6887 -1.2641 6 7 4.0678 -1.2489 0.0002 7 6 4.9764 -2.2735 0.0002 8 1 5.0094 -2.9657 0.8285 9 6 5.8547 -2.4222 -1.0642 10 7 6.0605 -1.4205 -1.8927 11 14 6.7448 -4.0444 -1.3209 12 1 5.7500 -5.1284 -1.5225 13 1 7.6190 -3.9454 -2.5172 14 1 7.5734 -4.3487 -0.1267 15 6 3.5713 -0.6885 1.2644 16 6 2.0398 -0.7209 1.2500 17 1 1.6977 -1.7557 1.2381 18 7 1.5255 -0.0491 2.4460 19 6 1.3970 -0.7327 3.6003 20 8 1.7083 -1.9069 3.6492 21 6 0.8777 -0.0551 4.8066 22 7 0.5376 1.2278 4.7549 23 6 0.0706 1.8691 5.8058 24 6 -0.0934 1.2402 7.0278 25 6 0.2439 -0.1014 7.1483 26 8 0.2136 -0.9964 8.1508 27 6 0.6457 -2.1988 7.7321 28 6 0.9915 -2.1408 6.4356 29 6 0.7379 -0.7663 6.0067 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8899 33 1 1.6978 -1.7557 -1.2381 34 1 1.6572 -0.2209 -2.1398 35 1 3.9417 -1.2848 -2.0983 36 1 3.9143 0.3405 -1.3699 37 1 6.6741 -1.5245 -2.6367 38 1 3.9416 -1.2844 2.0985 39 1 3.9163 0.3402 1.3685 40 1 1.2775 0.8879 2.4070 41 1 -0.1920 2.9124 5.7116 42 1 -0.4786 1.7858 7.8764 43 1 0.7133 -3.0812 8.3510 44 1 1.3797 -2.9474 5.8315 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967418708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:25 Heat of formation + Delta-G solvation = 28.417002 kcal Electronic energy + Delta-G solvation = -28077.348426 eV Core-core repulsion = 24189.894476 eV Total energy + Delta-G solvation = -3887.453950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.94007 -40.06738 -38.85702 -37.49994 -34.48334 -33.17148 -33.05043 -31.98036 -31.05906 -30.16623 -28.81173 -27.27728 -25.19402 -24.01333 -23.32313 -22.76378 -21.77417 -20.98758 -20.28196 -19.44160 -18.16670 -17.95202 -16.93670 -16.75599 -16.59118 -15.71480 -15.54041 -14.98595 -14.68417 -14.52813 -14.27163 -13.80776 -13.63069 -13.57326 -13.35256 -13.18834 -13.09952 -12.99410 -12.43569 -12.11646 -11.96543 -11.59179 -11.46056 -11.00983 -10.76266 -10.65141 -10.56890 -10.36196 -10.22251 -10.14107 -9.91194 -9.83472 -9.74297 -9.60183 -9.47235 -8.80752 -8.59775 -8.34822 -6.63689 -5.74761 -3.16623 0.10266 0.88811 2.04319 2.31892 2.74157 3.19739 3.43428 3.47979 3.50928 3.71674 3.93397 4.18796 4.26760 4.54767 4.64291 4.75091 4.91437 5.09423 5.17448 5.34113 5.41678 5.43417 5.46561 5.52864 5.60591 5.65172 5.94525 5.98107 6.02170 6.10428 6.12343 6.23149 6.27055 6.35510 6.60744 6.64826 6.66651 6.71482 6.77650 6.87485 7.03955 7.38702 7.41740 7.68870 7.82385 7.86179 8.38975 8.50240 9.25868 9.88268 10.44112 11.33943 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015997 B = 0.003163 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.893615 B = 8849.020173 C =10022.162807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.068 0.932 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.251 4.251 8 H 0.066 0.934 9 C 0.003 3.997 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.142 3.858 16 C 0.131 3.869 17 H 0.088 0.912 18 N -0.696 5.696 19 C 0.565 3.435 20 O -0.524 6.524 21 C 0.145 3.855 22 N -0.464 5.464 23 C 0.110 3.890 24 C -0.141 4.141 25 C 0.079 3.921 26 O -0.190 6.190 27 C -0.001 4.001 28 C -0.171 4.171 29 C -0.135 4.135 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.019 0.981 37 H 0.254 0.746 38 H 0.058 0.942 39 H 0.019 0.981 40 H 0.405 0.595 41 H 0.175 0.825 42 H 0.148 0.852 43 H 0.216 0.784 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.482 6.086 16.176 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.310 5.310 7 C -0.380 4.380 8 H 0.084 0.916 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.733 3.267 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.209 1.209 15 C 0.014 3.986 16 C 0.026 3.974 17 H 0.106 0.894 18 N -0.346 5.346 19 C 0.348 3.652 20 O -0.399 6.399 21 C 0.002 3.998 22 N -0.177 5.177 23 C -0.044 4.044 24 C -0.162 4.162 25 C 0.025 3.975 26 O -0.090 6.090 27 C -0.065 4.065 28 C -0.191 4.191 29 C -0.139 4.139 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.241 0.759 41 H 0.192 0.808 42 H 0.165 0.835 43 H 0.232 0.768 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.107 5.747 15.529 22.414 hybrid contribution 0.321 -0.781 0.618 1.046 sum -14.786 4.966 16.147 22.450 Atomic orbital electron populations 1.21857 0.95973 1.01514 1.00867 1.21302 0.94616 0.99752 0.95312 0.91343 1.22246 1.00634 0.99537 0.94851 1.20846 0.87338 0.97340 0.90334 1.43988 1.48075 1.39783 0.99111 1.19182 1.09742 1.02867 1.06220 0.91612 1.25005 0.97206 0.97478 0.99876 1.70028 1.37817 1.29041 1.17976 0.86360 0.79232 0.83875 0.77282 1.20979 1.21665 1.20884 1.21187 0.89954 0.96769 0.90691 1.21849 0.96804 0.96980 0.81778 0.89409 1.45973 1.63982 1.14850 1.09763 1.17632 0.78903 0.86159 0.82478 1.90801 1.49766 1.15265 1.84090 1.20908 0.96684 0.89480 0.92746 1.67679 1.10771 1.07661 1.31585 1.22591 0.95082 1.00217 0.86523 1.21173 1.04217 0.90013 1.00753 1.19721 0.99534 0.92065 0.86227 1.83968 1.70545 1.18384 1.36057 1.24286 0.99672 0.86590 0.95908 1.22781 1.05056 0.96162 0.95111 1.20660 1.03235 0.95664 0.94341 0.93002 0.93232 0.92946 0.92419 0.92682 0.89255 0.96310 0.93628 0.92382 0.96364 0.75919 0.80831 0.83468 0.76769 0.80717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.02 37.15 0.34 -1.64 16 2 C -0.09 -1.50 2.27 -90.58 -0.21 -1.70 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.13 -2.50 5.36 -26.61 -0.14 -2.64 16 5 C 0.17 3.97 5.31 -3.71 -0.02 3.95 16 6 N -0.59 -15.06 2.99 -172.32 -0.52 -15.58 16 7 C -0.25 -7.10 9.58 -15.06 -0.14 -7.24 16 8 H 0.07 1.87 7.89 -52.49 -0.41 1.46 16 9 C 0.00 0.07 4.91 -17.44 -0.09 -0.01 16 10 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 11 Si 0.90 22.17 29.59 -169.99 -5.03 17.14 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.14 3.16 6.09 -3.71 -0.02 3.13 16 16 C 0.13 2.41 2.06 -67.81 -0.14 2.27 16 17 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 18 N -0.70 -11.00 4.36 -54.65 -0.24 -11.24 16 19 C 0.56 9.50 7.77 -12.36 -0.10 9.41 16 20 O -0.52 -10.30 14.87 5.31 0.08 -10.22 16 21 C 0.15 2.10 6.78 -82.80 -0.56 1.53 16 22 N -0.46 -5.66 9.55 -9.68 -0.09 -5.75 16 23 C 0.11 0.98 11.13 -17.56 -0.20 0.78 16 24 C -0.14 -1.21 10.13 -39.29 -0.40 -1.61 16 25 C 0.08 0.90 7.48 -38.29 -0.29 0.61 16 26 O -0.19 -1.98 10.57 4.97 0.05 -1.92 16 27 C 0.00 0.00 11.97 29.34 0.35 0.35 16 28 C -0.17 -2.06 10.31 -37.78 -0.39 -2.45 16 29 C -0.13 -1.83 6.16 -104.90 -0.65 -2.47 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.62 7.36 -51.93 -0.38 0.24 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.41 5.60 7.65 -40.82 -0.31 5.28 16 41 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.22 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.18 2.20 7.29 -52.49 -0.38 1.82 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -33.25 362.00 -8.29 -41.53 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.97 Total: 4.14 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.65 Total: 2.26 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.23 Total: -58.39 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.13 Total: -12.14 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.25 -8.29 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967418708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.952 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds