Wall clock time and date at job start Tue Mar 31 2020 18:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46767 * 2 1 4 4 C 1.53001 * 109.47182 * 240.00006 * 2 1 3 5 5 N 1.46495 * 109.46946 * 184.99688 * 4 2 1 6 6 C 1.46495 * 120.00349 * 269.99728 * 5 4 2 7 7 C 1.36942 * 119.99722 * 90.00085 * 5 4 2 8 8 H 1.08001 * 120.00059 * 22.34126 * 7 5 4 9 9 C 1.38815 * 119.99789 * 202.33498 * 7 5 4 10 10 N 1.31616 * 120.00004 * 11.36936 * 9 7 5 11 11 Si 1.86795 * 119.99910 * 191.36451 * 9 7 5 12 12 H 1.48499 * 109.47368 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46981 * 120.00369 * 11 9 7 14 14 H 1.48501 * 109.47209 * 240.00047 * 11 9 7 15 15 N 1.46500 * 109.47227 * 119.99630 * 2 1 3 16 16 C 1.34779 * 120.00008 * 275.00061 * 15 2 1 17 17 O 1.21494 * 119.99891 * 0.02562 * 16 15 2 18 18 C 1.48340 * 119.99777 * 180.27264 * 16 15 2 19 19 C 1.41916 * 126.84350 * 179.43268 * 18 16 15 20 20 C 1.36722 * 103.81547 * 179.89339 * 19 18 16 21 21 C 1.47858 * 126.81413 * 180.09435 * 20 19 18 22 22 C 1.39557 * 120.14355 * 0.02636 * 21 20 19 23 23 C 1.37963 * 119.85107 * 179.76594 * 22 21 20 24 24 C 1.38357 * 120.14342 * 0.50892 * 23 22 21 25 25 C 1.38359 * 120.28979 * 359.74701 * 24 23 22 26 26 C 1.37961 * 120.14374 * 359.97438 * 25 24 23 27 27 O 1.34455 * 106.36393 * 0.37157 * 20 19 18 28 28 N 1.20876 * 111.74262 * 359.74991 * 27 20 19 29 29 H 1.09004 * 109.46995 * 299.99916 * 1 2 3 30 30 H 1.08992 * 109.47231 * 60.00522 * 1 2 3 31 31 H 1.09002 * 109.46640 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46474 * 304.99982 * 4 2 1 33 33 H 1.09000 * 109.47185 * 64.99467 * 4 2 1 34 34 H 1.08997 * 109.47248 * 94.22618 * 6 5 4 35 35 H 1.09001 * 109.47756 * 214.23122 * 6 5 4 36 36 H 1.09005 * 109.46903 * 334.22956 * 6 5 4 37 37 H 0.97001 * 120.00116 * 180.02562 * 10 9 7 38 38 H 0.97001 * 119.99386 * 95.00384 * 15 2 1 39 39 H 1.07999 * 128.09008 * 0.02801 * 19 18 16 40 40 H 1.08001 * 120.07556 * 0.02562 * 22 21 20 41 41 H 1.07994 * 119.92916 * 180.25723 * 23 22 21 42 42 H 1.08000 * 119.85265 * 179.76175 * 24 23 22 43 43 H 1.07996 * 119.92889 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.07497 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1906 6 6 4.3344 0.2341 -1.7613 7 6 4.0850 -1.9158 -0.6022 8 1 3.5339 -2.8399 -0.5086 9 6 5.3864 -1.8324 -0.1263 10 7 5.9795 -0.6611 -0.0337 11 14 6.2957 -3.3826 0.3828 12 1 5.4149 -4.5614 0.1832 13 1 7.5191 -3.5335 -0.4454 14 1 6.6765 -3.2855 1.8149 15 7 2.0184 -0.6905 1.1962 16 6 2.1472 -0.0181 2.3572 17 8 1.8577 1.1606 2.4117 18 6 2.6474 -0.7159 3.5669 19 6 2.8491 -0.1507 4.8529 20 6 3.3112 -1.1978 5.6008 21 6 3.6837 -1.1685 7.0314 22 6 3.5777 0.0177 7.7590 23 6 3.9223 0.0371 9.0948 24 6 4.3821 -1.1135 9.7104 25 6 4.4946 -2.2914 8.9934 26 6 4.1479 -2.3257 7.6585 27 8 3.3656 -2.2579 4.7756 28 7 2.9969 -1.9759 3.6595 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1370 34 1 4.6023 0.9456 -0.9803 35 1 5.2404 -0.2027 -2.1812 36 1 3.7810 0.7484 -2.5471 37 1 6.8890 -0.6029 0.2986 38 1 2.2492 -1.6317 1.1526 39 1 2.6757 0.8677 5.1678 40 1 3.2227 0.9175 7.2786 41 1 3.8369 0.9533 9.6600 42 1 4.6542 -1.0920 10.7554 43 1 4.8538 -3.1862 9.4799 44 1 4.2357 -3.2458 7.1000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754316047.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:20 Heat of formation + Delta-G solvation = 75.730504 kcal Electronic energy + Delta-G solvation = -27870.547169 eV Core-core repulsion = 23985.144886 eV Total energy + Delta-G solvation = -3885.402283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -44.82190 -39.30120 -39.11939 -36.35817 -34.06326 -33.89701 -33.21172 -31.34141 -31.17710 -30.06195 -29.49828 -26.18787 -25.60748 -24.79185 -23.81127 -22.82622 -21.93807 -21.59573 -20.14995 -19.59230 -18.32889 -17.58204 -16.86852 -16.49149 -16.39289 -15.59131 -15.30861 -15.05800 -14.85686 -14.35897 -14.00104 -13.71916 -13.69120 -13.42146 -13.34412 -13.18654 -13.06760 -12.87010 -12.22949 -11.95265 -11.74736 -11.42331 -11.39129 -11.31171 -11.21697 -10.84008 -10.68776 -10.43415 -10.38327 -10.29753 -10.15615 -10.01020 -9.82683 -9.65089 -9.24292 -8.56339 -8.48357 -8.37383 -6.78147 -5.73615 -3.19843 0.48976 1.12241 1.60262 2.10763 2.92433 3.36883 3.44863 3.46051 3.47862 3.58343 3.78009 4.25119 4.47560 4.50338 4.66232 4.71692 4.84246 5.09076 5.13697 5.18409 5.33737 5.38982 5.47371 5.51530 5.61712 5.67501 5.74831 5.85954 5.95385 5.98179 6.14704 6.16323 6.20280 6.21245 6.22107 6.42908 6.48225 6.63276 6.73903 6.85408 7.15338 7.38848 7.72439 7.80256 8.04626 8.31224 8.37021 8.74560 9.21393 9.84860 10.33859 11.30644 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.003705 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.519119 B = 7554.923485 C = 8977.671365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.116 3.884 3 H 0.080 0.920 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.258 4.258 8 H 0.067 0.933 9 C 0.011 3.989 10 N -0.899 5.899 11 Si 0.896 3.104 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.290 1.290 15 N -0.667 5.667 16 C 0.598 3.402 17 O -0.545 6.545 18 C -0.010 4.010 19 C -0.163 4.163 20 C -0.008 4.008 21 C -0.013 4.013 22 C -0.092 4.092 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.096 4.096 27 O 0.128 5.872 28 N -0.315 5.315 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.027 0.973 35 H 0.045 0.955 36 H -0.004 1.004 37 H 0.251 0.749 38 H 0.411 0.589 39 H 0.180 0.820 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 -0.553 15.694 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.098 0.902 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.019 3.981 7 C -0.387 4.387 8 H 0.085 0.915 9 C -0.189 4.189 10 N -0.544 5.544 11 Si 0.726 3.274 12 H -0.201 1.201 13 H -0.217 1.217 14 H -0.217 1.217 15 N -0.316 5.316 16 C 0.381 3.619 17 O -0.423 6.423 18 C -0.169 4.169 19 C -0.185 4.185 20 C -0.070 4.070 21 C -0.014 4.014 22 C -0.110 4.110 23 C -0.136 4.136 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.114 4.114 27 O 0.050 5.950 28 N -0.013 5.013 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.015 0.985 37 H 0.061 0.939 38 H 0.248 0.752 39 H 0.197 0.803 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.784 -0.662 14.736 16.236 hybrid contribution 0.852 -0.448 0.724 1.204 sum -5.932 -1.110 15.459 16.595 Atomic orbital electron populations 1.22165 0.96546 1.01464 1.01738 1.21975 0.92036 0.98496 0.86622 0.90207 1.21206 0.86078 0.97988 0.93431 1.43920 0.98860 1.22700 1.66631 1.20801 0.93002 0.90435 0.93829 1.19116 0.97185 0.89449 1.32980 0.91520 1.24967 0.98639 0.96182 0.99076 1.70082 1.13271 1.21592 1.49434 0.86316 0.79981 0.83132 0.78011 1.20140 1.21665 1.21675 1.45631 1.63289 1.14765 1.07955 1.16760 0.77908 0.85611 0.81582 1.90715 1.52119 1.14714 1.84721 1.23515 1.05304 0.90790 0.97282 1.22551 1.03796 1.01105 0.91036 1.22408 1.04444 0.87218 0.92957 1.17609 1.01805 0.95105 0.86919 1.21161 0.98920 0.96713 0.94223 1.21070 0.99468 0.98733 0.94311 1.21319 0.98634 0.92887 1.00120 1.21110 1.00101 0.98466 0.93954 1.21346 0.97232 0.97716 0.95110 1.84874 1.61555 1.34519 1.14079 1.74212 1.11963 1.16828 0.98328 0.92874 0.91929 0.92877 0.93226 0.92656 0.95432 0.93638 0.98520 0.93877 0.75243 0.80265 0.85091 0.85280 0.85702 0.85388 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.49 37.16 0.35 -2.11 16 2 C 0.12 2.24 2.88 -67.93 -0.20 2.04 16 3 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 4 C 0.14 2.79 5.36 -4.04 -0.02 2.76 16 5 N -0.60 -14.64 2.82 -181.12 -0.51 -15.15 16 6 C 0.16 4.07 9.01 59.84 0.54 4.60 16 7 C -0.26 -6.82 8.02 -15.06 -0.12 -6.94 16 8 H 0.07 1.73 7.84 -52.49 -0.41 1.32 16 9 C 0.01 0.29 5.13 -17.43 -0.09 0.20 16 10 N -0.90 -26.28 10.59 55.49 0.59 -25.69 16 11 Si 0.90 22.13 29.57 -169.99 -5.03 17.11 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 15 N -0.67 -13.91 4.49 -54.59 -0.24 -14.15 16 16 C 0.60 12.87 7.81 -12.10 -0.09 12.77 16 17 O -0.55 -12.56 16.61 5.37 0.09 -12.47 16 18 C -0.01 -0.20 7.18 -82.62 -0.59 -0.79 16 19 C -0.16 -2.63 10.34 -38.72 -0.40 -3.03 16 20 C -0.01 -0.11 7.15 -36.19 -0.26 -0.37 16 21 C -0.01 -0.16 5.87 -104.97 -0.62 -0.77 16 22 C -0.09 -0.92 9.58 -39.19 -0.38 -1.30 16 23 C -0.12 -0.97 10.03 -39.64 -0.40 -1.37 16 24 C -0.11 -0.86 10.04 -39.49 -0.40 -1.26 16 25 C -0.12 -1.00 10.03 -39.64 -0.40 -1.40 16 26 C -0.10 -1.00 9.73 -39.19 -0.38 -1.39 16 27 O 0.13 2.17 11.01 16.07 0.18 2.34 16 28 N -0.31 -6.13 11.82 33.35 0.39 -5.74 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.93 8.03 -51.93 -0.42 0.51 16 33 H 0.06 0.98 7.86 -51.93 -0.41 0.57 16 34 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 35 H 0.04 1.21 7.19 -51.93 -0.37 0.83 16 36 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 37 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.41 8.79 7.15 -40.82 -0.29 8.50 16 39 H 0.18 2.46 7.46 -52.49 -0.39 2.07 16 40 H 0.13 1.15 7.15 -52.49 -0.38 0.78 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.13 1.30 7.96 -52.49 -0.42 0.88 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -32.46 376.28 -8.26 -40.72 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.94 Total: 5.71 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.45 Total: 1.66 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.23 Total: -60.73 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.27 Total: -10.13 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.46 -8.26 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754316047.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.447 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds