Wall clock time and date at job start Tue Mar 31 2020 18:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47182 * 2 1 4 4 C 1.53012 * 109.47052 * 119.99773 * 2 1 3 5 5 N 1.46497 * 109.46757 * 175.00026 * 4 2 1 6 6 C 1.46498 * 120.00196 * 269.99452 * 5 4 2 7 7 C 1.36937 * 119.99848 * 90.00549 * 5 4 2 8 8 H 1.08003 * 120.00053 * 339.77032 * 7 5 4 9 9 C 1.38814 * 119.99802 * 160.05573 * 7 5 4 10 10 N 1.31618 * 120.00056 * 344.55602 * 9 7 5 11 11 Si 1.86808 * 119.99876 * 164.56135 * 9 7 5 12 12 H 1.48502 * 109.46953 * 59.99508 * 11 9 7 13 13 H 1.48493 * 109.46832 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.46785 * 299.99577 * 11 9 7 15 15 N 1.46498 * 109.47473 * 239.99448 * 2 1 3 16 16 C 1.34782 * 119.99889 * 84.99818 * 15 2 1 17 17 O 1.21494 * 119.99626 * 0.02562 * 16 15 2 18 18 C 1.48341 * 120.00359 * 180.02562 * 16 15 2 19 19 C 1.41913 * 126.84759 * 180.02562 * 18 16 15 20 20 C 1.36713 * 103.81915 * 179.97438 * 19 18 16 21 21 C 1.47853 * 126.81916 * 180.02562 * 20 19 18 22 22 C 1.39555 * 120.14230 * 359.71941 * 21 20 19 23 23 C 1.37960 * 119.85196 * 179.74570 * 22 21 20 24 24 C 1.38356 * 120.14614 * 0.53666 * 23 22 21 25 25 C 1.38351 * 120.28802 * 359.74259 * 24 23 22 26 26 C 1.37965 * 120.14434 * 359.97350 * 25 24 23 27 27 O 1.34463 * 106.36273 * 359.97438 * 20 19 18 28 28 N 1.20882 * 111.73853 * 359.71198 * 27 20 19 29 29 H 1.09003 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47391 * 300.00001 * 1 2 3 31 31 H 1.08999 * 109.46843 * 60.00329 * 1 2 3 32 32 H 1.08995 * 109.46832 * 54.99882 * 4 2 1 33 33 H 1.08997 * 109.46900 * 295.00068 * 4 2 1 34 34 H 1.08999 * 109.47318 * 264.78929 * 6 5 4 35 35 H 1.09006 * 109.46644 * 24.79018 * 6 5 4 36 36 H 1.09000 * 109.47128 * 144.78305 * 6 5 4 37 37 H 0.96995 * 119.99514 * 180.02562 * 10 9 7 38 38 H 0.96997 * 120.00318 * 265.00617 * 15 2 1 39 39 H 1.08001 * 128.08941 * 359.97234 * 19 18 16 40 40 H 1.08007 * 120.07427 * 0.02562 * 22 21 20 41 41 H 1.08006 * 119.93016 * 180.29464 * 23 22 21 42 42 H 1.07996 * 119.85610 * 179.76701 * 24 23 22 43 43 H 1.07996 * 119.93090 * 180.02562 * 25 24 23 44 44 H 1.07998 * 120.07395 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2494 5 7 3.5000 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5614 7 6 4.2798 0.1649 1.7241 8 1 3.8655 1.1487 1.8879 9 6 5.6045 -0.0933 2.0490 10 7 6.0306 -1.3355 2.1364 11 14 6.7823 1.3225 2.3622 12 1 6.2858 2.1368 3.5004 13 1 8.1273 0.7844 2.6885 14 1 6.8698 2.1715 1.1471 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8585 1.1605 -2.4116 18 6 2.6411 -0.7178 -3.5684 19 6 2.8319 -0.1557 -4.8574 20 6 3.2951 -1.2025 -5.6049 21 6 3.6610 -1.1750 -7.0372 22 6 3.5416 0.0076 -7.7684 23 6 3.8897 0.0277 -9.1033 24 6 4.3457 -1.1239 -9.7199 25 6 4.4608 -2.3010 -9.0020 26 6 4.1216 -2.3332 -7.6651 27 8 3.3529 -2.2617 -4.7786 28 7 2.9951 -1.9766 -3.6597 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 4.3667 -2.7315 1.3250 35 1 3.4368 -2.4278 -0.1621 36 1 5.0394 -1.6837 0.0530 37 1 6.9561 -1.5158 2.3637 38 1 2.2490 -1.6318 -1.1525 39 1 2.6529 0.8613 -5.1739 40 1 3.1819 0.9062 -7.2893 41 1 3.8024 0.9435 -9.6692 42 1 4.6133 -1.1037 -10.7659 43 1 4.8178 -3.1964 -9.4890 44 1 4.2123 -3.2526 -7.1058 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754316048.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:29 Heat of formation + Delta-G solvation = 78.833441 kcal Electronic energy + Delta-G solvation = -27333.829171 eV Core-core repulsion = 23448.561442 eV Total energy + Delta-G solvation = -3885.267729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.07178 -39.45146 -39.38700 -36.50175 -34.20302 -34.12496 -33.40915 -31.40927 -31.23141 -30.27639 -29.70337 -26.20370 -25.68584 -24.99368 -23.99344 -22.99054 -22.11882 -21.61444 -20.34084 -19.85950 -18.48772 -17.83335 -16.85316 -16.81265 -16.59180 -15.59745 -15.47735 -15.18667 -15.04449 -14.52013 -14.17474 -13.87022 -13.72344 -13.62693 -13.52679 -13.31852 -13.25299 -12.89425 -12.22369 -12.03837 -11.92348 -11.58485 -11.49515 -11.40263 -11.32845 -10.81409 -10.68500 -10.64377 -10.56830 -10.43544 -10.20262 -10.08231 -9.86904 -9.83896 -9.36577 -8.74546 -8.65409 -8.47842 -6.78366 -5.72354 -3.16325 0.31781 0.99988 1.32835 1.91500 2.69296 3.22549 3.40577 3.42464 3.45843 3.47657 3.48512 3.99404 4.28302 4.51121 4.52960 4.58252 4.71239 4.88028 4.96864 5.03343 5.18446 5.27117 5.31653 5.45427 5.48709 5.59603 5.62123 5.73840 5.76427 5.90878 6.03457 6.05270 6.05879 6.09607 6.14506 6.39966 6.47351 6.50618 6.63934 6.74257 6.94068 7.34738 7.67760 7.74407 7.81201 8.01331 8.37192 8.43999 9.22481 9.85902 10.32781 11.32678 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.002897 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.659914 B = 9661.362986 C =10565.767519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 H 0.088 0.912 4 C 0.143 3.857 5 N -0.599 5.599 6 C 0.168 3.832 7 C -0.255 4.255 8 H 0.069 0.931 9 C 0.002 3.998 10 N -0.907 5.907 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.285 1.285 15 N -0.684 5.684 16 C 0.595 3.405 17 O -0.533 6.533 18 C -0.015 4.015 19 C -0.164 4.164 20 C 0.000 4.000 21 C -0.018 4.018 22 C -0.090 4.090 23 C -0.118 4.118 24 C -0.109 4.109 25 C -0.118 4.118 26 C -0.094 4.094 27 O 0.129 5.871 28 N -0.323 5.323 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.031 0.969 35 H -0.007 1.007 36 H 0.042 0.958 37 H 0.253 0.747 38 H 0.404 0.596 39 H 0.182 0.818 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 -2.139 -22.317 23.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.106 0.894 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.023 3.977 7 C -0.384 4.384 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.552 5.552 11 Si 0.733 3.267 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.211 1.211 15 N -0.335 5.335 16 C 0.378 3.622 17 O -0.409 6.409 18 C -0.173 4.173 19 C -0.186 4.186 20 C -0.062 4.062 21 C -0.019 4.019 22 C -0.109 4.109 23 C -0.136 4.136 24 C -0.127 4.127 25 C -0.136 4.136 26 C -0.112 4.112 27 O 0.051 5.949 28 N -0.022 5.022 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.011 0.989 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.241 0.759 39 H 0.199 0.801 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.337 -2.354 -21.276 22.628 hybrid contribution 0.879 0.994 -0.171 1.338 sum -6.458 -1.360 -21.447 22.439 Atomic orbital electron populations 1.22133 0.96137 1.01524 1.01996 1.22084 0.92413 0.99052 0.85714 0.89398 1.21058 0.85950 0.97669 0.93930 1.43862 0.99065 1.22848 1.66353 1.20816 0.94205 0.88914 0.93743 1.19132 0.92880 0.90347 1.36056 0.91362 1.24936 0.98469 0.96122 1.00102 1.70072 1.15847 1.17052 1.52270 0.86356 0.80382 0.81832 0.78143 1.20879 1.21639 1.21141 1.45956 1.64414 1.14385 1.08738 1.16831 0.78119 0.85783 0.81468 1.90756 1.51078 1.14569 1.84451 1.23561 1.05436 0.90932 0.97403 1.22580 1.03773 1.01349 0.90902 1.22428 1.03908 0.86907 0.92999 1.17594 1.02323 0.95249 0.86752 1.21167 0.98737 0.96737 0.94245 1.21090 0.99349 0.98788 0.94334 1.21347 0.98323 0.92836 1.00188 1.21126 1.00044 0.98526 0.93932 1.21342 0.97195 0.97588 0.95123 1.84864 1.61783 1.34424 1.13783 1.74178 1.12748 1.16547 0.98757 0.92888 0.91569 0.92815 0.93962 0.91546 0.95056 0.98887 0.93940 0.93726 0.75917 0.80075 0.85066 0.85196 0.85606 0.85289 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.48 37.16 0.35 -1.99 16 2 C 0.11 2.09 2.88 -67.93 -0.20 1.90 16 3 H 0.09 1.85 7.58 -51.93 -0.39 1.45 16 4 C 0.14 2.84 5.29 -4.04 -0.02 2.82 16 5 N -0.60 -14.93 2.78 -181.11 -0.50 -15.44 16 6 C 0.17 4.14 8.52 59.85 0.51 4.65 16 7 C -0.25 -7.08 9.67 -15.06 -0.15 -7.22 16 8 H 0.07 1.87 7.87 -52.48 -0.41 1.45 16 9 C 0.00 0.05 5.06 -17.43 -0.09 -0.04 16 10 N -0.91 -26.79 10.67 55.49 0.59 -26.19 16 11 Si 0.90 22.49 29.58 -169.99 -5.03 17.46 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 15 N -0.68 -12.62 4.52 -54.59 -0.25 -12.86 16 16 C 0.60 11.28 7.81 -12.10 -0.09 11.18 16 17 O -0.53 -11.18 16.61 5.37 0.09 -11.09 16 18 C -0.01 -0.25 7.18 -82.62 -0.59 -0.84 16 19 C -0.16 -2.23 10.34 -38.73 -0.40 -2.63 16 20 C 0.00 0.00 7.15 -36.20 -0.26 -0.25 16 21 C -0.02 -0.18 5.87 -104.98 -0.62 -0.79 16 22 C -0.09 -0.75 9.58 -39.19 -0.38 -1.13 16 23 C -0.12 -0.80 10.03 -39.64 -0.40 -1.19 16 24 C -0.11 -0.69 10.04 -39.50 -0.40 -1.08 16 25 C -0.12 -0.81 10.03 -39.64 -0.40 -1.21 16 26 C -0.09 -0.80 9.73 -39.19 -0.38 -1.18 16 27 O 0.13 1.78 11.01 16.05 0.18 1.96 16 28 N -0.32 -5.20 11.82 33.35 0.39 -4.81 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 34 H 0.03 0.83 7.40 -51.93 -0.38 0.45 16 35 H -0.01 -0.15 5.76 -51.93 -0.30 -0.45 16 36 H 0.04 1.16 7.20 -51.93 -0.37 0.78 16 37 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.40 7.29 5.96 -40.82 -0.24 7.04 16 39 H 0.18 2.08 7.46 -52.49 -0.39 1.69 16 40 H 0.13 0.93 7.15 -52.48 -0.38 0.56 16 41 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 44 H 0.13 1.01 7.96 -52.49 -0.42 0.59 16 LS Contribution 374.36 15.07 5.64 5.64 Total: -1.00 -32.95 374.36 -8.19 -41.14 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.80 Total: 3.20 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.50 Total: 0.99 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.24 Total: -59.30 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.27 Total: -9.13 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.95 -8.19 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754316048.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.974 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds