Wall clock time and date at job start Tue Mar 31 2020 15:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47020 * 2 1 4 4 N 1.40080 * 126.03304 * 269.97673 * 3 2 1 5 5 C 1.30844 * 108.20410 * 180.02562 * 4 3 2 6 6 C 1.39867 * 108.20109 * 359.77904 * 5 4 3 7 7 C 1.34942 * 126.03848 * 89.99721 * 3 2 1 8 8 C 1.50701 * 126.12734 * 359.94259 * 7 3 2 9 9 N 1.46494 * 109.47226 * 274.99954 * 8 7 3 10 10 C 1.34780 * 119.99917 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00129 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99933 * 180.02562 * 10 9 8 13 13 C 1.50701 * 109.47242 * 179.97438 * 12 10 9 14 14 C 1.38299 * 119.93217 * 269.72899 * 13 12 10 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47263 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47148 * 119.99951 * 22 20 18 25 25 H 1.48504 * 109.47096 * 239.99883 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.47508 * 300.00098 * 1 2 3 29 29 H 1.09005 * 109.47237 * 60.00066 * 1 2 3 30 30 H 1.08997 * 109.47354 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47295 * 239.99652 * 2 1 3 32 32 H 1.09001 * 109.46687 * 119.99442 * 2 1 3 33 33 H 1.07999 * 125.90044 * 179.97438 * 5 4 3 34 34 H 1.08004 * 126.04202 * 180.23265 * 6 5 4 35 35 H 1.09002 * 109.46924 * 154.99647 * 8 7 3 36 36 H 1.09001 * 109.46844 * 35.00250 * 8 7 3 37 37 H 0.97002 * 120.00191 * 359.97438 * 9 8 7 38 38 H 1.09002 * 109.47056 * 59.99417 * 12 10 9 39 39 H 1.09001 * 109.46884 * 299.99904 * 12 10 9 40 40 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 41 41 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 42 42 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 44 44 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2934 2.1580 -1.1328 5 6 2.7089 3.3322 -0.7322 6 6 2.7070 3.3426 0.6664 7 6 2.2829 2.1298 1.0912 8 6 2.1278 1.6950 2.5258 9 7 0.7425 1.9058 2.9529 10 6 0.3682 1.5868 4.2078 11 8 1.1782 1.1247 4.9832 12 6 -1.0571 1.8031 4.6470 13 6 -1.2121 1.3685 6.0816 14 6 -1.5691 0.0645 6.3729 15 6 -1.7064 -0.3383 7.6866 16 6 -1.4970 0.5707 8.7156 17 8 -1.6375 0.1794 10.0079 18 6 -1.3094 1.0775 10.9584 19 1 -1.0317 2.0829 10.6786 20 6 -1.3285 0.7102 12.2953 21 7 -1.6672 -0.5145 12.6363 22 14 -0.8733 1.9543 13.6123 23 1 -0.5340 3.2508 12.9725 24 1 -2.0228 2.1433 14.5333 25 1 0.2983 1.4582 14.3782 26 6 -1.1441 1.8808 8.4197 27 6 -1.0029 2.2761 7.1040 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.9999 4.1529 -1.3711 34 1 2.9951 4.1713 1.2962 35 1 2.7959 2.2809 3.1571 36 1 2.3785 0.6379 2.6142 37 1 0.0947 2.2757 2.3328 38 1 -1.7247 1.2166 4.0158 39 1 -1.3082 2.8600 4.5580 40 1 -1.7367 -0.6406 5.5721 41 1 -1.9810 -1.3579 7.9136 42 1 -1.6801 -0.7715 13.5715 43 1 -0.9810 2.5902 9.2176 44 1 -0.7289 3.2949 6.8733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856478934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:24 Heat of formation + Delta-G solvation = 37.506608 kcal Electronic energy + Delta-G solvation = -26476.093347 eV Core-core repulsion = 22589.033552 eV Total energy + Delta-G solvation = -3887.059795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70713 -39.78594 -38.76939 -36.55043 -35.27123 -34.66013 -32.49016 -31.75982 -30.82305 -30.12832 -29.75015 -27.34292 -25.82239 -24.88592 -24.19617 -21.95281 -21.49025 -21.19845 -20.30519 -19.90910 -17.95965 -17.68855 -16.94365 -16.64485 -16.23479 -15.67777 -15.20584 -15.15368 -14.57721 -14.54883 -14.41076 -14.22952 -13.83872 -13.72185 -13.49879 -13.44186 -13.16177 -12.96623 -12.71983 -12.65997 -12.51782 -12.27801 -11.83822 -11.76857 -11.49497 -11.25848 -11.00706 -10.84877 -10.75058 -10.58424 -10.40177 -10.02435 -9.61386 -9.30983 -9.29008 -8.94711 -8.80003 -8.12902 -7.14309 -6.42518 -4.00936 1.32999 2.07293 2.26346 2.27880 2.43381 2.69697 3.13140 3.15665 3.21284 3.27111 3.99060 4.03566 4.10018 4.51884 4.55023 4.62383 4.69555 4.79915 4.92727 5.09788 5.11091 5.18478 5.23912 5.25728 5.33557 5.35654 5.40754 5.42927 5.60648 5.65521 5.74751 5.76543 5.86297 6.14914 6.23989 6.27205 6.44006 6.58480 6.72326 6.93564 7.07862 7.25681 7.32307 7.33870 7.39215 7.47615 7.86184 8.02961 8.22481 9.03399 9.73976 10.75689 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.002008 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.114858 B =13937.863140 C =14500.662843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 N -0.360 5.360 4 N -0.291 5.291 5 C 0.043 3.957 6 C -0.252 4.252 7 C 0.065 3.935 8 C 0.185 3.815 9 N -0.738 5.738 10 C 0.511 3.489 11 O -0.516 6.516 12 C -0.078 4.078 13 C -0.171 4.171 14 C -0.059 4.059 15 C -0.192 4.192 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.184 0.816 34 H 0.150 0.850 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.269 0.731 43 H 0.127 0.873 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.621 5.877 -25.675 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.144 5.144 4 N -0.112 5.112 5 C -0.143 4.143 6 C -0.282 4.282 7 C -0.063 4.063 8 C 0.060 3.940 9 N -0.393 5.393 10 C 0.298 3.702 11 O -0.389 6.389 12 C -0.118 4.118 13 C -0.173 4.173 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.201 1.201 26 C -0.251 4.251 27 C -0.074 4.074 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.201 0.799 34 H 0.167 0.833 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.813 4.280 -25.758 26.551 hybrid contribution 0.249 1.402 0.952 1.713 sum 5.062 5.682 -24.806 25.947 Atomic orbital electron populations 1.22196 0.93887 1.03520 1.03196 1.21742 0.95600 0.77763 1.04595 1.48779 1.50364 1.12066 1.03145 1.77389 1.21438 1.04384 1.08014 1.23873 0.99522 0.95837 0.95019 1.21367 1.13524 0.98175 0.95163 1.21056 1.02254 0.92847 0.90123 1.19687 0.85143 1.01968 0.87192 1.46161 1.10798 1.68030 1.14348 1.21124 0.91372 0.77178 0.80547 1.90768 1.53665 1.42294 1.52179 1.20399 0.92334 1.03084 0.95984 1.18612 1.11565 0.94983 0.92098 1.20383 0.97911 0.94432 0.95056 1.20152 1.10815 0.99139 0.90984 1.19385 0.92073 0.92187 0.86058 1.83977 1.73267 1.40933 1.10001 1.21377 1.47156 0.93138 0.84964 0.89015 1.25294 0.96796 0.97263 0.97258 1.70051 1.44396 1.17282 1.18093 0.85646 0.78382 0.79457 0.79928 1.19102 1.20182 1.20146 1.21108 1.10561 0.96858 0.96621 1.20511 0.96962 0.97756 0.92191 0.91805 0.91589 0.90207 0.88571 0.88758 0.79880 0.83260 0.88825 0.90450 0.76653 0.89005 0.88899 0.87445 0.86562 0.92111 0.85575 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.12 0.78 6.96 -4.04 -0.03 0.76 16 3 N -0.36 -3.11 3.61 -57.14 -0.21 -3.32 16 4 N -0.29 -2.90 12.58 30.62 0.39 -2.51 16 5 C 0.04 0.35 12.03 -17.36 -0.21 0.14 16 6 C -0.25 -2.03 10.72 -40.01 -0.43 -2.46 16 7 C 0.06 0.55 6.30 -82.26 -0.52 0.03 16 8 C 0.19 1.62 5.84 -5.20 -0.03 1.59 16 9 N -0.74 -6.53 5.44 -61.47 -0.33 -6.86 16 10 C 0.51 6.46 7.82 -10.98 -0.09 6.38 16 11 O -0.52 -9.13 16.03 5.56 0.09 -9.04 16 12 C -0.08 -0.92 5.83 -29.03 -0.17 -1.09 16 13 C -0.17 -2.90 4.38 -104.57 -0.46 -3.36 16 14 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 15 C -0.19 -4.15 9.99 -39.40 -0.39 -4.55 16 16 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 17 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 18 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 19 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 22 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 26 C -0.23 -5.18 9.17 -39.40 -0.36 -5.54 16 27 C -0.06 -1.05 9.69 -39.61 -0.38 -1.43 16 28 H 0.06 0.38 7.75 -51.93 -0.40 -0.03 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.52 7.15 -51.93 -0.37 0.15 16 33 H 0.18 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.70 7.24 -51.93 -0.38 0.33 16 37 H 0.40 2.71 8.18 -40.82 -0.33 2.37 16 38 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.09 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 44 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -35.56 380.75 -7.56 -43.12 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.83 Total: 4.89 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.13 Total: -17.76 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.60 Total: -37.55 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.56 -7.56 -43.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856478934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.622 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds