Wall clock time and date at job start Tue Mar 31 2020 15:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35354 * 116.99723 * 2 1 4 4 C 1.39002 * 126.42207 * 94.07406 * 3 2 1 5 5 C 1.46909 * 126.48850 * 359.97438 * 4 3 2 6 6 O 1.21669 * 120.00344 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00031 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00293 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47215 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.46898 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47152 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99433 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00453 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99622 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00151 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47116 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46951 * 119.99991 * 15 13 11 18 18 H 1.48496 * 109.46819 * 239.99835 * 15 13 11 19 19 C 1.41491 * 107.02332 * 179.97438 * 4 3 2 20 20 N 1.30349 * 108.18306 * 0.02562 * 19 4 3 21 21 N 1.34952 * 126.42353 * 273.75779 * 3 2 1 22 22 C 1.40153 * 125.76312 * 359.97438 * 21 3 2 23 23 C 1.38847 * 120.06726 * 318.32187 * 22 21 3 24 24 C 1.38120 * 119.92723 * 179.67641 * 23 22 21 25 25 C 1.38277 * 120.07185 * 0.62160 * 24 23 22 26 26 C 1.38280 * 120.13313 * 359.67952 * 25 24 23 27 27 C 1.38115 * 120.06856 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47240 * 175.03272 * 1 2 3 29 29 H 1.08999 * 109.47549 * 295.03402 * 1 2 3 30 30 H 1.09003 * 109.47358 * 55.03491 * 1 2 3 31 31 H 0.97003 * 119.99404 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.46720 * 300.00368 * 8 7 5 33 33 H 1.08994 * 109.46945 * 60.00433 * 8 7 5 34 34 H 1.09003 * 109.46838 * 299.99997 * 9 8 7 35 35 H 1.08999 * 109.47214 * 59.99373 * 9 8 7 36 36 H 1.08990 * 109.47573 * 299.99718 * 10 9 8 37 37 H 1.09005 * 109.47471 * 60.00347 * 10 9 8 38 38 H 0.96996 * 119.99408 * 180.02562 * 14 13 11 39 39 H 1.07989 * 125.91181 * 180.02562 * 19 4 3 40 40 H 1.08000 * 120.03665 * 0.02562 * 23 22 21 41 41 H 1.07999 * 119.96312 * 180.34159 * 24 23 22 42 42 H 1.07997 * 119.93315 * 179.69532 * 25 24 23 43 43 H 1.07994 * 119.96791 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.03667 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4888 1.9053 1.1157 5 6 2.3813 1.4756 2.5164 6 8 1.8601 0.4102 2.7876 7 7 2.8608 2.2612 3.5010 8 6 2.7531 1.8330 4.8979 9 6 3.3690 2.8985 5.8069 10 6 3.2559 2.4515 7.2657 11 6 3.8631 3.5007 8.1611 12 1 4.2876 4.3965 7.7323 13 6 3.8776 3.3166 9.5274 14 7 3.3611 2.2255 10.0494 15 14 4.6309 4.6168 10.6372 16 1 5.1399 5.7396 9.8093 17 1 3.5992 5.1228 11.5778 18 1 5.7528 4.0213 11.4065 19 6 3.0654 3.1094 0.6469 20 7 2.9702 3.1269 -0.6530 21 7 2.3437 1.9523 -1.0836 22 6 2.0716 1.6097 -2.4151 23 6 2.2755 0.3084 -2.8541 24 6 2.0000 -0.0276 -4.1652 25 6 1.5339 0.9334 -5.0435 26 6 1.3358 2.2317 -4.6108 27 6 1.6026 2.5723 -3.2991 28 1 -0.3634 -1.0238 -0.0890 29 1 -0.3634 0.4348 0.9311 30 1 -0.3634 0.5889 -0.8422 31 1 3.2767 3.1104 3.2847 32 1 1.7029 1.6981 5.1565 33 1 3.2841 0.8904 5.0309 34 1 4.4192 3.0337 5.5483 35 1 2.8378 3.8409 5.6737 36 1 2.2057 2.3166 7.5240 37 1 3.7869 1.5090 7.3992 38 1 3.3710 2.0962 11.0106 39 1 3.5079 3.8805 1.2599 40 1 2.6437 -0.4416 -2.1698 41 1 2.1531 -1.0409 -4.5060 42 1 1.3239 0.6693 -6.0694 43 1 0.9713 2.9800 -5.2989 44 1 1.4473 3.5863 -2.9616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116632665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:52 Heat of formation + Delta-G solvation = 28.034821 kcal Electronic energy + Delta-G solvation = -26560.004789 eV Core-core repulsion = 22672.534266 eV Total energy + Delta-G solvation = -3887.470523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.13299 -39.60397 -38.82971 -38.43110 -35.29382 -34.01713 -33.22158 -31.59512 -31.27036 -30.22646 -29.55347 -27.50216 -26.62548 -24.20798 -23.61786 -23.03335 -22.09205 -21.10416 -20.62023 -19.98486 -18.95384 -17.12771 -16.90636 -16.73932 -16.51387 -16.17288 -15.51437 -15.31105 -15.14420 -15.05708 -14.59445 -14.43869 -14.40112 -13.99003 -13.84582 -13.66200 -13.50205 -13.16245 -12.27955 -12.27095 -12.21997 -11.81133 -11.77672 -11.66846 -11.59982 -10.90622 -10.73133 -10.69618 -10.55304 -10.37085 -9.85455 -9.83474 -9.55707 -9.36437 -9.27747 -9.08250 -8.83592 -8.57805 -8.35589 -6.00116 -4.02924 0.31158 0.78780 1.20188 1.66974 1.88876 3.05902 3.21474 3.31340 3.38791 3.42166 3.51849 3.55342 4.13457 4.35868 4.41838 4.46127 4.57187 4.71094 4.76751 4.81205 4.85786 4.97653 5.04302 5.06656 5.32334 5.35823 5.39476 5.43840 5.65945 5.75388 5.80241 5.83193 5.90976 5.94720 6.06374 6.21316 6.37746 6.54830 6.64503 6.88947 7.02767 7.04181 7.14447 7.66379 7.79060 7.80636 7.99162 8.39853 8.50326 9.04098 9.61229 11.11207 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.001901 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.531870 B =14729.034296 C =15339.486814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.292 6.292 3 C 0.324 3.676 4 C -0.283 4.283 5 C 0.588 3.412 6 O -0.540 6.540 7 N -0.721 5.721 8 C 0.120 3.880 9 C -0.121 4.121 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.098 3.902 20 N -0.272 5.272 21 N -0.326 5.326 22 C 0.137 3.863 23 C -0.112 4.112 24 C -0.102 4.102 25 C -0.115 4.115 26 C -0.106 4.106 27 C -0.103 4.103 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.396 0.604 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.202 0.798 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 -1.530 -32.588 33.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.201 6.201 3 C 0.154 3.846 4 C -0.298 4.298 5 C 0.374 3.626 6 O -0.418 6.418 7 N -0.371 5.371 8 C -0.003 4.003 9 C -0.159 4.159 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.090 4.090 20 N -0.093 5.093 21 N -0.110 5.110 22 C 0.047 3.953 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.125 4.125 27 C -0.123 4.123 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.230 0.770 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.219 0.781 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.791 -2.022 -33.272 33.833 hybrid contribution 0.372 0.791 1.344 1.603 sum -5.419 -1.231 -31.929 32.409 Atomic orbital electron populations 1.23146 0.76469 1.04331 1.01557 1.86016 1.21517 1.19844 1.92730 1.19382 0.94821 0.84806 0.85638 1.20203 1.17341 0.98598 0.93697 1.16925 0.78492 0.84003 0.83168 1.90809 1.44678 1.22499 1.83861 1.45946 1.61074 1.22911 1.07207 1.21635 1.01510 0.99119 0.78021 1.21891 0.99439 0.96726 0.97850 1.19038 0.97592 0.96935 0.87918 1.21252 1.38435 1.04835 0.91409 0.92569 1.25035 0.95549 0.95596 0.98353 1.69979 1.45468 1.26073 1.11754 0.86530 0.78950 0.81773 0.80698 1.19758 1.21036 1.21032 1.24119 0.96495 0.96623 0.91775 1.77357 1.18357 1.00159 1.13377 1.46252 1.45467 1.15189 1.04073 1.17538 1.02098 0.94638 0.81047 1.21207 1.00280 0.94838 0.96943 1.21066 0.98610 1.00137 0.92277 1.21329 0.98768 0.93147 1.00128 1.21099 0.99557 0.96867 0.94932 1.21076 0.98443 0.99425 0.93346 0.87473 0.91768 0.93583 0.76995 0.91753 0.91685 0.92659 0.92690 0.96255 0.96237 0.93016 0.78149 0.84639 0.84782 0.85194 0.84881 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 11.13 101.05 1.12 1.51 16 2 O -0.29 -3.78 8.75 -24.99 -0.22 -3.99 16 3 C 0.32 4.30 6.68 -15.90 -0.11 4.20 16 4 C -0.28 -3.84 6.15 -104.87 -0.64 -4.49 16 5 C 0.59 9.43 7.80 -12.75 -0.10 9.33 16 6 O -0.54 -10.58 16.38 -2.02 -0.03 -10.62 16 7 N -0.72 -10.59 5.55 -61.55 -0.34 -10.94 16 8 C 0.12 2.12 5.67 -4.04 -0.02 2.10 16 9 C -0.12 -2.35 5.27 -26.73 -0.14 -2.49 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 12 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.10 1.07 11.50 -16.94 -0.19 0.87 16 20 N -0.27 -3.27 12.30 30.89 0.38 -2.89 16 21 N -0.33 -3.92 3.69 -10.27 -0.04 -3.96 16 22 C 0.14 1.38 6.28 -83.60 -0.53 0.86 16 23 C -0.11 -0.98 9.18 -39.40 -0.36 -1.34 16 24 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 25 C -0.12 -0.62 10.04 -39.55 -0.40 -1.02 16 26 C -0.11 -0.64 10.04 -39.61 -0.40 -1.03 16 27 C -0.10 -0.85 9.83 -39.40 -0.39 -1.24 16 28 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.40 4.55 7.42 -40.82 -0.30 4.25 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.20 1.42 7.50 -52.49 -0.39 1.03 16 40 H 0.14 1.25 7.39 -52.49 -0.39 0.86 16 41 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 43 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -35.13 383.81 -7.97 -43.10 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.12 Total: -0.18 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -3.10 Total: -6.69 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.74 Total: -43.89 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.25 Total: -14.61 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.13 -7.97 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116632665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.135 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds