Wall clock time and date at job start Tue Mar 31 2020 15:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35354 * 116.99723 * 2 1 4 4 C 1.39002 * 126.42207 * 94.07406 * 3 2 1 5 5 C 1.46909 * 126.48850 * 359.97438 * 4 3 2 6 6 O 1.21669 * 120.00344 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00031 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00293 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47215 * 180.02562 * 8 7 5 10 10 C 1.52992 * 109.46898 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47152 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99433 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00453 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99622 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00151 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47116 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.46951 * 119.99991 * 15 13 11 18 18 H 1.48496 * 109.46819 * 239.99835 * 15 13 11 19 19 C 1.41491 * 107.02332 * 179.97438 * 4 3 2 20 20 N 1.30349 * 108.18306 * 0.02562 * 19 4 3 21 21 N 1.34952 * 126.42353 * 273.75779 * 3 2 1 22 22 C 1.40153 * 125.76312 * 359.97438 * 21 3 2 23 23 C 1.38847 * 120.06726 * 318.32187 * 22 21 3 24 24 C 1.38120 * 119.92723 * 179.67641 * 23 22 21 25 25 C 1.38277 * 120.07185 * 0.62160 * 24 23 22 26 26 C 1.38280 * 120.13313 * 359.67952 * 25 24 23 27 27 C 1.38115 * 120.06856 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47240 * 175.03272 * 1 2 3 29 29 H 1.08999 * 109.47549 * 295.03402 * 1 2 3 30 30 H 1.09003 * 109.47358 * 55.03491 * 1 2 3 31 31 H 0.97003 * 119.99404 * 0.02562 * 7 5 4 32 32 H 1.09001 * 109.46720 * 300.00368 * 8 7 5 33 33 H 1.08994 * 109.46945 * 60.00433 * 8 7 5 34 34 H 1.09003 * 109.46838 * 299.99997 * 9 8 7 35 35 H 1.08999 * 109.47214 * 59.99373 * 9 8 7 36 36 H 1.08990 * 109.47573 * 299.99718 * 10 9 8 37 37 H 1.09005 * 109.47471 * 60.00347 * 10 9 8 38 38 H 0.96996 * 119.99408 * 180.02562 * 14 13 11 39 39 H 1.07989 * 125.91181 * 180.02562 * 19 4 3 40 40 H 1.08000 * 120.03665 * 0.02562 * 23 22 21 41 41 H 1.07999 * 119.96312 * 180.34159 * 24 23 22 42 42 H 1.07997 * 119.93315 * 179.69532 * 25 24 23 43 43 H 1.07994 * 119.96791 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.03667 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 6 2.4888 1.9053 1.1157 5 6 2.3813 1.4756 2.5164 6 8 1.8601 0.4102 2.7876 7 7 2.8608 2.2612 3.5010 8 6 2.7531 1.8330 4.8979 9 6 3.3690 2.8985 5.8069 10 6 3.2559 2.4515 7.2657 11 6 3.8631 3.5007 8.1611 12 1 4.2876 4.3965 7.7323 13 6 3.8776 3.3166 9.5274 14 7 3.3611 2.2255 10.0494 15 14 4.6309 4.6168 10.6372 16 1 5.1399 5.7396 9.8093 17 1 3.5992 5.1228 11.5778 18 1 5.7528 4.0213 11.4065 19 6 3.0654 3.1094 0.6469 20 7 2.9702 3.1269 -0.6530 21 7 2.3437 1.9523 -1.0836 22 6 2.0716 1.6097 -2.4151 23 6 2.2755 0.3084 -2.8541 24 6 2.0000 -0.0276 -4.1652 25 6 1.5339 0.9334 -5.0435 26 6 1.3358 2.2317 -4.6108 27 6 1.6026 2.5723 -3.2991 28 1 -0.3634 -1.0238 -0.0890 29 1 -0.3634 0.4348 0.9311 30 1 -0.3634 0.5889 -0.8422 31 1 3.2767 3.1104 3.2847 32 1 1.7029 1.6981 5.1565 33 1 3.2841 0.8904 5.0309 34 1 4.4192 3.0337 5.5483 35 1 2.8378 3.8409 5.6737 36 1 2.2057 2.3166 7.5240 37 1 3.7869 1.5090 7.3992 38 1 3.3710 2.0962 11.0106 39 1 3.5079 3.8805 1.2599 40 1 2.6437 -0.4416 -2.1698 41 1 2.1531 -1.0409 -4.5060 42 1 1.3239 0.6693 -6.0694 43 1 0.9713 2.9800 -5.2989 44 1 1.4473 3.5863 -2.9616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116632665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:51 Heat of formation + Delta-G solvation = 5.177601 kcal Electronic energy + Delta-G solvation = -26560.995953 eV Core-core repulsion = 22672.534266 eV Total energy + Delta-G solvation = -3888.461686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.02116 -40.49383 -39.81423 -39.34280 -36.88482 -35.19292 -34.69639 -33.01034 -32.13029 -31.18259 -30.38481 -28.63731 -28.08324 -25.52244 -24.36147 -24.16558 -23.10333 -22.28686 -21.87545 -21.15129 -19.88912 -18.53914 -17.96382 -17.74607 -17.59381 -17.18695 -16.65841 -16.57224 -16.37485 -16.02874 -16.00313 -15.42947 -15.23466 -14.98270 -14.77322 -14.65327 -14.49532 -14.21545 -13.83120 -13.71934 -13.45826 -13.05210 -12.76701 -12.75693 -12.55145 -12.50364 -12.31713 -12.24921 -11.64196 -11.61854 -11.49913 -11.21305 -11.15902 -10.92243 -10.53764 -10.26420 -10.08647 -9.97698 -9.46771 -8.17374 -6.28418 -0.42957 0.26292 0.40236 0.83022 0.98286 1.43264 1.43491 1.56721 2.15268 2.26823 2.43866 2.44716 2.66700 3.16567 3.33570 3.75256 3.81160 3.83547 3.97340 4.06831 4.16021 4.19333 4.24818 4.26781 4.33669 4.38433 4.42398 4.52758 4.56973 4.60054 4.95191 4.96830 4.99127 5.04329 5.20804 5.22644 5.28744 5.38807 5.43686 5.46943 5.56675 5.74770 5.82185 5.87411 6.14339 6.24985 6.27978 6.62881 6.89605 7.27740 7.41066 8.94932 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.001901 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.531870 B =14729.034296 C =15339.486814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.309 6.309 3 C 0.318 3.682 4 C -0.308 4.308 5 C 0.590 3.410 6 O -0.584 6.584 7 N -0.707 5.707 8 C 0.134 3.866 9 C -0.102 4.102 10 C 0.022 3.978 11 C -0.538 4.538 12 H 0.068 0.932 13 C -0.005 4.005 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.258 1.258 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.111 3.889 20 N -0.286 5.286 21 N -0.321 5.321 22 C 0.103 3.897 23 C -0.126 4.126 24 C -0.101 4.101 25 C -0.105 4.105 26 C -0.102 4.102 27 C -0.113 4.113 28 H 0.130 0.870 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.415 0.585 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.071 0.929 36 H -0.007 1.007 37 H -0.008 1.008 38 H 0.262 0.738 39 H 0.238 0.762 40 H 0.122 0.878 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 0.230 -35.222 35.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.218 6.218 3 C 0.147 3.853 4 C -0.323 4.323 5 C 0.378 3.622 6 O -0.465 6.465 7 N -0.358 5.358 8 C 0.010 3.990 9 C -0.139 4.139 10 C -0.016 4.016 11 C -0.576 4.576 12 H 0.086 0.914 13 C -0.202 4.202 14 N -0.576 5.576 15 Si 0.792 3.208 16 H -0.181 1.181 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.076 4.076 20 N -0.106 5.106 21 N -0.104 5.104 22 C 0.013 3.987 23 C -0.146 4.146 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.132 4.132 28 H 0.148 0.852 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.252 0.748 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.011 0.989 37 H 0.010 0.990 38 H 0.071 0.929 39 H 0.254 0.746 40 H 0.140 0.860 41 H 0.175 0.825 42 H 0.181 0.819 43 H 0.178 0.822 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.351 -0.217 -35.958 36.355 hybrid contribution 0.184 0.164 2.006 2.021 sum -5.167 -0.053 -33.952 34.343 Atomic orbital electron populations 1.23294 0.75033 1.05956 1.01242 1.85976 1.22954 1.20044 1.92842 1.19563 0.94651 0.84883 0.86240 1.20025 1.19690 1.00293 0.92329 1.17225 0.77498 0.83317 0.84175 1.90780 1.46679 1.24423 1.84615 1.45647 1.60944 1.23594 1.05653 1.21234 1.00269 0.97990 0.79521 1.21602 1.00743 0.97436 0.94166 1.18960 0.95291 0.95570 0.91753 1.21728 1.38219 1.05534 0.92145 0.91403 1.26030 0.96043 0.97886 1.00283 1.70125 1.46943 1.28302 1.12215 0.85364 0.77939 0.79058 0.78453 1.18125 1.20646 1.20711 1.24631 0.95281 0.96167 0.91567 1.77329 1.18832 1.00637 1.13824 1.46388 1.44687 1.14746 1.04625 1.17901 1.04420 0.95778 0.80564 1.21246 1.01219 0.94112 0.98004 1.21390 0.97672 1.01621 0.91227 1.21751 0.96756 0.92446 1.01388 1.21462 0.98418 0.97953 0.94202 1.21193 0.98865 0.98975 0.94196 0.85223 0.93403 0.92182 0.74783 0.93082 0.93284 0.91192 0.91064 0.98891 0.98997 0.92895 0.74595 0.86021 0.82490 0.81907 0.82156 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 11.13 113.37 1.26 2.03 16 2 O -0.31 -8.28 8.75 -79.52 -0.70 -8.98 16 3 C 0.32 8.66 6.68 84.40 0.56 9.22 16 4 C -0.31 -8.40 6.15 -20.02 -0.12 -8.52 16 5 C 0.59 19.24 7.80 86.51 0.67 19.91 16 6 O -0.58 -23.82 16.38 2.67 0.04 -23.77 16 7 N -0.71 -20.45 5.55 -466.86 -2.59 -23.04 16 8 C 0.13 4.81 5.67 86.38 0.49 5.30 16 9 C -0.10 -3.90 5.27 30.59 0.16 -3.73 16 10 C 0.02 1.15 4.97 29.85 0.15 1.29 16 11 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 12 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 13 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 14 N -0.94 -57.39 13.29 21.45 0.28 -57.10 16 15 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 C 0.11 2.30 11.50 85.71 0.99 3.29 16 20 N -0.29 -6.68 12.30 -56.20 -0.69 -7.37 16 21 N -0.32 -7.76 3.69 -298.03 -1.10 -8.85 16 22 C 0.10 2.04 6.28 38.10 0.24 2.28 16 23 C -0.13 -2.13 9.18 22.39 0.21 -1.93 16 24 C -0.10 -1.04 10.04 22.25 0.22 -0.82 16 25 C -0.11 -0.78 10.04 22.29 0.22 -0.55 16 26 C -0.10 -0.94 10.04 22.25 0.22 -0.72 16 27 C -0.11 -1.74 9.83 22.39 0.22 -1.52 16 28 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.41 8.77 7.42 -92.71 -0.69 8.08 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 36 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.24 2.73 7.50 -2.92 -0.02 2.71 16 40 H 0.12 2.33 7.39 -2.91 -0.02 2.31 16 41 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 42 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 43 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 44 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -78.69 383.81 3.80 -74.89 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.33 Total: 12.33 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 6.19 Total: -4.09 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -4.09 Total: -96.37 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.65 Total: -32.75 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -78.69 3.80 -74.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116632665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.070 kcal (2) G-P(sol) polarization free energy of solvation -78.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds