Wall clock time and date at job start Tue Mar 31 2020 15:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47052 * 2 1 4 4 N 1.28511 * 124.44857 * 90.02109 * 3 2 1 5 5 C 1.31135 * 109.06114 * 179.97438 * 4 3 2 6 6 C 1.50701 * 127.11047 * 179.97438 * 5 4 3 7 7 C 1.40928 * 105.77617 * 359.97438 * 5 4 3 8 8 C 1.47800 * 127.23727 * 179.97438 * 7 5 4 9 9 O 1.21557 * 119.99812 * 5.59237 * 8 7 5 10 10 N 1.34772 * 119.99845 * 185.59868 * 8 7 5 11 11 C 1.46494 * 120.00230 * 355.62038 * 10 8 7 12 12 C 1.50700 * 109.47289 * 276.36572 * 11 10 8 13 13 H 1.08000 * 119.99749 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99843 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99670 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00375 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47353 * 89.99789 * 16 14 12 18 18 H 1.48499 * 109.47384 * 209.99704 * 16 14 12 19 19 H 1.48498 * 109.47074 * 329.99901 * 16 14 12 20 20 C 1.46500 * 119.99976 * 175.62211 * 10 8 7 21 21 C 1.50701 * 109.47117 * 89.99835 * 20 10 8 22 22 C 1.38223 * 119.62017 * 94.97903 * 21 20 10 23 23 C 1.38628 * 119.16297 * 179.79302 * 22 21 20 24 24 C 1.38673 * 118.41816 * 0.47154 * 23 22 21 25 25 C 1.38177 * 119.16662 * 359.50737 * 24 23 22 26 26 N 1.31861 * 119.61765 * 275.00270 * 21 20 10 27 27 N 1.28597 * 124.44142 * 270.28579 * 3 2 1 28 28 H 1.09008 * 109.46727 * 60.00615 * 1 2 3 29 29 H 1.09003 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47121 * 300.00538 * 1 2 3 31 31 H 1.08999 * 109.47590 * 239.99507 * 2 1 3 32 32 H 1.09003 * 109.47344 * 119.99057 * 2 1 3 33 33 H 1.08995 * 109.47452 * 270.02258 * 6 5 4 34 34 H 1.08997 * 109.47531 * 30.02790 * 6 5 4 35 35 H 1.09008 * 109.46729 * 150.02341 * 6 5 4 36 36 H 1.09000 * 109.47164 * 36.36759 * 11 10 8 37 37 H 1.09007 * 109.47370 * 156.36253 * 11 10 8 38 38 H 0.97002 * 119.99952 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.47235 * 330.00244 * 20 10 8 40 40 H 1.09001 * 109.47812 * 209.99786 * 20 10 8 41 41 H 1.08001 * 120.41976 * 359.97438 * 22 21 20 42 42 H 1.08004 * 120.78853 * 180.23196 * 23 22 21 43 43 H 1.08005 * 120.41462 * 179.77956 * 24 23 22 44 44 H 1.07998 * 119.62170 * 180.24960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0665 1.0597 5 6 2.6828 3.2584 0.7118 6 6 3.0814 4.3856 1.6292 7 6 2.6865 3.2672 -0.6975 8 6 3.0807 4.3823 -1.5838 9 8 3.5487 5.3992 -1.1098 10 7 2.9213 4.2717 -2.9175 11 6 2.4477 3.0122 -3.4967 12 6 3.6117 2.0716 -3.6738 13 1 4.6051 2.3812 -3.3842 14 6 3.4085 0.8158 -4.2054 15 7 4.4243 -0.0053 -4.3594 16 14 1.6905 0.2805 -4.7068 17 1 1.4519 0.6480 -6.1257 18 1 1.5645 -1.1907 -4.5486 19 1 0.6895 0.9586 -3.8447 20 6 3.2217 5.4110 -3.7881 21 6 4.6674 5.3534 -4.2099 22 6 5.0049 4.7638 -5.4137 23 6 6.3371 4.7199 -5.7943 24 6 7.2854 5.2644 -4.9415 25 6 6.8730 5.8377 -3.7539 26 7 5.5958 5.8657 -3.4261 27 7 2.2558 2.0687 -1.0605 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 2.2086 4.9999 1.8505 34 1 3.4814 3.9753 2.5565 35 1 3.8425 4.9969 1.1443 36 1 1.7129 2.5597 -2.8307 37 1 1.9880 3.2079 -4.4655 38 1 4.2813 -0.8889 -4.7331 39 1 3.0377 6.3396 -3.2479 40 1 2.5839 5.3718 -4.6711 41 1 4.2400 4.3453 -6.0510 42 1 6.6299 4.2689 -6.7310 43 1 8.3328 5.2445 -5.2044 44 1 7.6049 6.2675 -3.0861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293168708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:55 Heat of formation + Delta-G solvation = 126.676627 kcal Electronic energy + Delta-G solvation = -29135.166526 eV Core-core repulsion = 25284.266184 eV Total energy + Delta-G solvation = -3850.900342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.05978 -39.79617 -38.59005 -35.27840 -34.67892 -32.73757 -32.39606 -31.89064 -31.34999 -30.74370 -28.10150 -27.70929 -26.37733 -24.30088 -23.02186 -22.55126 -22.08710 -21.40668 -20.48421 -18.93897 -17.09119 -16.75758 -16.44288 -16.27269 -15.96296 -15.54222 -15.37272 -15.11115 -14.46090 -14.16346 -13.83138 -13.57410 -13.33422 -13.12942 -12.93257 -12.81004 -12.59285 -12.51597 -12.34150 -12.20112 -12.00686 -11.91493 -11.60747 -11.33713 -11.30632 -10.95552 -10.91964 -10.68309 -10.26245 -9.83771 -9.66546 -9.54729 -9.37048 -9.24440 -8.89880 -8.67332 -8.60721 -8.47329 -7.72940 -6.09261 -4.05194 1.58188 1.84095 2.07087 2.44718 2.63482 3.17842 3.27088 3.30420 3.71998 4.02565 4.35174 4.39265 4.49892 4.80050 4.93432 4.98923 5.19458 5.22658 5.23497 5.25696 5.28321 5.41491 5.53156 5.58310 5.65498 5.72482 5.83481 5.92420 5.97235 6.00935 6.05216 6.15973 6.18305 6.24899 6.43321 6.48591 6.61829 6.66887 6.68572 6.87057 7.19831 7.21388 7.42097 7.58281 8.11812 8.47969 8.57582 8.73337 8.94853 8.99002 9.51582 11.04130 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.005984 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.585381 B = 4678.313378 C = 6503.712905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.135 3.865 3 N -0.154 5.154 4 N -0.309 5.309 5 C 0.048 3.952 6 C -0.062 4.062 7 C -0.041 4.041 8 C 0.611 3.389 9 O -0.534 6.534 10 N -0.577 5.577 11 C 0.198 3.802 12 C -0.502 4.502 13 H 0.071 0.929 14 C 0.078 3.922 15 N -0.899 5.899 16 Si 0.862 3.138 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.261 1.261 20 C 0.173 3.827 21 C 0.120 3.880 22 C -0.132 4.132 23 C -0.079 4.079 24 C -0.178 4.178 25 C 0.088 3.912 26 N -0.458 5.458 27 N -0.191 5.191 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 4.899 3.053 7.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 N -0.056 5.056 4 N -0.149 5.149 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.204 4.204 8 C 0.396 3.604 9 O -0.410 6.410 10 N -0.308 5.308 11 C 0.076 3.924 12 C -0.541 4.541 13 H 0.089 0.911 14 C -0.123 4.123 15 N -0.539 5.539 16 Si 0.689 3.311 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.185 1.185 20 C 0.049 3.951 21 C -0.019 4.019 22 C -0.152 4.152 23 C -0.105 4.105 24 C -0.199 4.199 25 C -0.070 4.070 26 N -0.167 5.167 27 N -0.038 5.038 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.665 4.329 4.020 7.527 hybrid contribution -0.015 -0.651 -1.380 1.526 sum -4.680 3.678 2.640 6.511 Atomic orbital electron populations 1.22179 0.93566 1.03556 1.03484 1.21947 0.95586 0.74990 1.05925 1.48209 1.44467 1.13182 0.99702 1.73747 1.19743 1.05197 1.16221 1.23118 1.01770 0.93879 0.92855 1.20131 1.02389 0.92984 0.96586 1.22857 1.09911 0.94106 0.93555 1.16617 0.77959 0.84340 0.81465 1.90725 1.45241 1.29719 1.75284 1.47729 1.64034 1.14293 1.04717 1.20257 0.97069 0.80953 0.94071 1.21159 0.94286 0.97797 1.40871 0.91134 1.24730 0.95976 0.96188 0.95450 1.69914 1.30240 1.07977 1.45725 0.87068 0.86412 0.78185 0.79421 1.20391 1.21262 1.18548 1.20170 0.89579 0.90759 0.94598 1.21534 0.96244 0.93826 0.90288 1.21911 0.97165 0.98229 0.97887 1.21469 0.93104 0.96482 0.99442 1.22030 1.00220 1.01058 0.96549 1.22623 0.92824 0.96864 0.94647 1.67539 1.01195 1.16312 1.31691 1.75096 1.12293 1.03498 1.12898 0.91367 0.89875 0.91611 0.87064 0.87668 0.90849 0.91378 0.88650 0.91901 0.95858 0.92881 0.88923 0.89322 0.84934 0.85423 0.85643 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.14 1.93 7.24 -4.04 -0.03 1.90 16 3 N -0.15 -2.90 3.94 -10.61 -0.04 -2.94 16 4 N -0.31 -5.78 12.01 33.92 0.41 -5.37 16 5 C 0.05 0.93 7.39 -81.87 -0.61 0.33 16 6 C -0.06 -0.96 10.05 36.01 0.36 -0.60 16 7 C -0.04 -0.89 6.86 -82.68 -0.57 -1.46 16 8 C 0.61 13.56 7.62 -12.35 -0.09 13.46 16 9 O -0.53 -12.06 14.80 5.32 0.08 -11.99 16 10 N -0.58 -12.31 2.46 -177.57 -0.44 -12.74 16 11 C 0.20 4.48 3.88 -5.20 -0.02 4.46 16 12 C -0.50 -13.26 9.09 -34.44 -0.31 -13.58 16 13 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 14 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -26.16 13.96 55.43 0.77 -25.38 16 16 Si 0.86 19.76 27.47 -169.99 -4.67 15.09 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 20 C 0.17 3.17 5.72 -5.19 -0.03 3.14 16 21 C 0.12 2.32 6.36 -82.58 -0.53 1.79 16 22 C -0.13 -2.37 9.72 -39.44 -0.38 -2.75 16 23 C -0.08 -1.29 10.18 -39.28 -0.40 -1.69 16 24 C -0.18 -2.77 10.11 -39.44 -0.40 -3.16 16 25 C 0.09 1.50 11.18 -17.55 -0.20 1.30 16 26 N -0.46 -9.14 10.27 -9.47 -0.10 -9.23 16 27 N -0.19 -4.16 8.08 33.42 0.27 -3.89 16 28 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 32 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.60 6.68 -51.92 -0.35 1.25 16 36 H 0.06 1.47 4.37 -51.93 -0.23 1.24 16 37 H 0.02 0.50 7.25 -51.93 -0.38 0.12 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.09 1.65 7.49 -51.93 -0.39 1.26 16 40 H 0.09 1.35 7.75 -51.93 -0.40 0.95 16 41 H 0.13 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.13 1.77 8.06 -52.48 -0.42 1.34 16 43 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 44 H 0.15 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -34.11 373.98 -6.98 -41.08 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.98 Total: 6.20 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.92 Total: 3.54 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: 0.88 Total: -59.56 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.11 -6.98 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293168708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.761 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds