Wall clock time and date at job start Tue Mar 31 2020 15:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.47052 * 2 1 4 4 N 1.28511 * 124.44857 * 90.02109 * 3 2 1 5 5 C 1.31135 * 109.06114 * 179.97438 * 4 3 2 6 6 C 1.50701 * 127.11047 * 179.97438 * 5 4 3 7 7 C 1.40928 * 105.77617 * 359.97438 * 5 4 3 8 8 C 1.47800 * 127.23727 * 179.97438 * 7 5 4 9 9 O 1.21557 * 119.99812 * 5.59237 * 8 7 5 10 10 N 1.34772 * 119.99845 * 185.59868 * 8 7 5 11 11 C 1.46494 * 120.00230 * 355.62038 * 10 8 7 12 12 C 1.50700 * 109.47289 * 276.36572 * 11 10 8 13 13 H 1.08000 * 119.99749 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99843 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99670 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00375 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47353 * 89.99789 * 16 14 12 18 18 H 1.48499 * 109.47384 * 209.99704 * 16 14 12 19 19 H 1.48498 * 109.47074 * 329.99901 * 16 14 12 20 20 C 1.46500 * 119.99976 * 175.62211 * 10 8 7 21 21 C 1.50701 * 109.47117 * 89.99835 * 20 10 8 22 22 C 1.38223 * 119.62017 * 94.97903 * 21 20 10 23 23 C 1.38628 * 119.16297 * 179.79302 * 22 21 20 24 24 C 1.38673 * 118.41816 * 0.47154 * 23 22 21 25 25 C 1.38177 * 119.16662 * 359.50737 * 24 23 22 26 26 N 1.31861 * 119.61765 * 275.00270 * 21 20 10 27 27 N 1.28597 * 124.44142 * 270.28579 * 3 2 1 28 28 H 1.09008 * 109.46727 * 60.00615 * 1 2 3 29 29 H 1.09003 * 109.46979 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47121 * 300.00538 * 1 2 3 31 31 H 1.08999 * 109.47590 * 239.99507 * 2 1 3 32 32 H 1.09003 * 109.47344 * 119.99057 * 2 1 3 33 33 H 1.08995 * 109.47452 * 270.02258 * 6 5 4 34 34 H 1.08997 * 109.47531 * 30.02790 * 6 5 4 35 35 H 1.09008 * 109.46729 * 150.02341 * 6 5 4 36 36 H 1.09000 * 109.47164 * 36.36759 * 11 10 8 37 37 H 1.09007 * 109.47370 * 156.36253 * 11 10 8 38 38 H 0.97002 * 119.99952 * 179.97438 * 15 14 12 39 39 H 1.08998 * 109.47235 * 330.00244 * 20 10 8 40 40 H 1.09001 * 109.47812 * 209.99786 * 20 10 8 41 41 H 1.08001 * 120.41976 * 359.97438 * 22 21 20 42 42 H 1.08004 * 120.78853 * 180.23196 * 23 22 21 43 43 H 1.08005 * 120.41462 * 179.77956 * 24 23 22 44 44 H 1.07998 * 119.62170 * 180.24960 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0665 1.0597 5 6 2.6828 3.2584 0.7118 6 6 3.0814 4.3856 1.6292 7 6 2.6865 3.2672 -0.6975 8 6 3.0807 4.3823 -1.5838 9 8 3.5487 5.3992 -1.1098 10 7 2.9213 4.2717 -2.9175 11 6 2.4477 3.0122 -3.4967 12 6 3.6117 2.0716 -3.6738 13 1 4.6051 2.3812 -3.3842 14 6 3.4085 0.8158 -4.2054 15 7 4.4243 -0.0053 -4.3594 16 14 1.6905 0.2805 -4.7068 17 1 1.4519 0.6480 -6.1257 18 1 1.5645 -1.1907 -4.5486 19 1 0.6895 0.9586 -3.8447 20 6 3.2217 5.4110 -3.7881 21 6 4.6674 5.3534 -4.2099 22 6 5.0049 4.7638 -5.4137 23 6 6.3371 4.7199 -5.7943 24 6 7.2854 5.2644 -4.9415 25 6 6.8730 5.8377 -3.7539 26 7 5.5958 5.8657 -3.4261 27 7 2.2558 2.0687 -1.0605 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 2.2086 4.9999 1.8505 34 1 3.4814 3.9753 2.5565 35 1 3.8425 4.9969 1.1443 36 1 1.7129 2.5597 -2.8307 37 1 1.9880 3.2079 -4.4655 38 1 4.2813 -0.8889 -4.7331 39 1 3.0377 6.3396 -3.2479 40 1 2.5839 5.3718 -4.6711 41 1 4.2400 4.3453 -6.0510 42 1 6.6299 4.2689 -6.7310 43 1 8.3328 5.2445 -5.2044 44 1 7.6049 6.2675 -3.0861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293168708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:54 Heat of formation + Delta-G solvation = 104.185130 kcal Electronic energy + Delta-G solvation = -29136.141831 eV Core-core repulsion = 25284.266184 eV Total energy + Delta-G solvation = -3851.875647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.55858 -41.22373 -40.17263 -36.95181 -35.97844 -34.57088 -33.99755 -33.27856 -32.74805 -32.09117 -29.93654 -29.05177 -27.82868 -25.73338 -24.50736 -24.14020 -23.54661 -22.81267 -21.92572 -20.54263 -19.04233 -18.23617 -17.98700 -17.75445 -17.40200 -17.03798 -16.90336 -16.51041 -16.09746 -15.44712 -15.40805 -15.00758 -14.83826 -14.60912 -14.34534 -14.14151 -14.08126 -13.94471 -13.84591 -13.56539 -13.35292 -13.20815 -13.03376 -12.72088 -12.64622 -12.45278 -12.36965 -12.31185 -12.02910 -11.65023 -11.42184 -11.19851 -10.99496 -10.67498 -10.63536 -10.30963 -10.13117 -9.86192 -9.41392 -8.17338 -6.17900 0.22690 0.46609 0.50884 0.95735 1.32260 1.38167 1.40980 1.52341 2.15544 2.38679 2.41358 2.97384 3.08616 3.18610 3.47993 3.68046 3.87119 3.90433 3.92669 3.98299 4.07126 4.21451 4.27578 4.33833 4.48842 4.57937 4.60128 4.65536 4.67383 4.74140 4.80013 4.82600 4.85986 4.93476 5.03911 5.06123 5.10541 5.29283 5.36115 5.39016 5.56070 5.67454 5.82083 5.89815 6.26040 6.54061 6.79343 7.14769 7.21173 7.33374 7.43698 8.99870 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.005984 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.585381 B = 4678.313378 C = 6503.712905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 N -0.148 5.148 4 N -0.303 5.303 5 C 0.042 3.958 6 C -0.057 4.057 7 C -0.073 4.073 8 C 0.603 3.397 9 O -0.546 6.546 10 N -0.580 5.580 11 C 0.207 3.793 12 C -0.485 4.485 13 H 0.012 0.988 14 C 0.027 3.973 15 N -0.949 5.949 16 Si 0.927 3.073 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.242 1.242 20 C 0.168 3.832 21 C 0.099 3.901 22 C -0.147 4.147 23 C -0.088 4.088 24 C -0.172 4.172 25 C 0.072 3.928 26 N -0.493 5.493 27 N -0.218 5.218 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.138 0.862 42 H 0.153 0.847 43 H 0.163 0.837 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 4.471 3.071 7.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.001 3.999 3 N -0.051 5.051 4 N -0.144 5.144 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.235 4.235 8 C 0.389 3.611 9 O -0.424 6.424 10 N -0.309 5.309 11 C 0.085 3.915 12 C -0.524 4.524 13 H 0.030 0.970 14 C -0.170 4.170 15 N -0.591 5.591 16 Si 0.750 3.250 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.165 1.165 20 C 0.045 3.955 21 C -0.040 4.040 22 C -0.168 4.168 23 C -0.114 4.114 24 C -0.191 4.191 25 C -0.085 4.085 26 N -0.203 5.203 27 N -0.065 5.065 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.151 0.849 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.171 0.829 43 H 0.180 0.820 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.056 3.933 4.035 8.272 hybrid contribution 0.554 -0.540 -1.327 1.536 sum -5.502 3.393 2.707 7.008 Atomic orbital electron populations 1.22151 0.91192 1.05617 1.02793 1.22454 0.97565 0.73064 1.06815 1.48752 1.43165 1.14124 0.99102 1.73747 1.19730 1.04971 1.15978 1.23657 1.01239 0.94802 0.92490 1.20199 1.02830 0.92008 0.96524 1.22994 1.11431 0.94298 0.94739 1.16851 0.77828 0.84521 0.81918 1.90696 1.45856 1.30267 1.75534 1.47756 1.63829 1.14507 1.04853 1.20064 0.95530 0.80918 0.94967 1.21024 0.92808 0.98611 1.39975 0.96970 1.25484 1.00129 0.95968 0.95409 1.70079 1.32970 1.08558 1.47490 0.86029 0.81402 0.77861 0.79677 1.19291 1.21049 1.16528 1.20425 0.90109 0.89711 0.95247 1.21659 0.96513 0.94865 0.90963 1.22092 0.98360 0.98498 0.97820 1.21886 0.92701 0.96187 1.00606 1.22425 1.01955 0.99286 0.95460 1.23147 0.92481 0.97063 0.95846 1.67510 1.02543 1.17558 1.32700 1.74968 1.13243 1.03937 1.14393 0.93091 0.86401 0.91153 0.88090 0.84894 0.88787 0.89123 0.90243 0.91837 0.93812 0.92910 0.88907 0.86353 0.84424 0.82932 0.81984 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.24 71.98 0.74 -2.59 16 2 C 0.12 3.20 7.24 86.38 0.63 3.83 16 3 N -0.15 -5.47 3.94 -187.48 -0.74 -6.21 16 4 N -0.30 -11.05 12.01 -46.58 -0.56 -11.61 16 5 C 0.04 1.60 7.39 43.32 0.32 1.92 16 6 C -0.06 -1.72 10.05 71.24 0.72 -1.00 16 7 C -0.07 -3.21 6.86 42.24 0.29 -2.92 16 8 C 0.60 27.35 7.62 86.77 0.66 28.01 16 9 O -0.55 -25.33 14.80 -3.90 -0.06 -25.39 16 10 N -0.58 -25.00 2.46 -833.99 -2.05 -27.05 16 11 C 0.21 9.34 3.88 85.63 0.33 9.67 16 12 C -0.49 -26.14 9.09 25.60 0.23 -25.91 16 13 H 0.01 0.78 8.06 -2.91 -0.02 0.76 16 14 C 0.03 1.47 5.47 84.65 0.46 1.93 16 15 N -0.95 -56.41 13.96 21.45 0.30 -56.12 16 16 Si 0.93 40.14 27.47 68.60 1.88 42.02 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.24 -9.66 6.54 99.48 0.65 -9.01 16 20 C 0.17 6.20 5.72 85.63 0.49 6.69 16 21 C 0.10 3.86 6.36 42.55 0.27 4.13 16 22 C -0.15 -5.33 9.72 22.36 0.22 -5.11 16 23 C -0.09 -2.81 10.18 22.47 0.23 -2.58 16 24 C -0.17 -5.12 10.11 22.36 0.23 -4.89 16 25 C 0.07 2.44 11.18 84.67 0.95 3.39 16 26 N -0.49 -20.08 10.27 -183.89 -1.89 -21.97 16 27 N -0.22 -9.47 8.08 -48.17 -0.39 -9.86 16 28 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.41 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.08 2.67 6.68 -2.38 -0.02 2.65 16 36 H 0.06 2.92 4.37 -2.39 -0.01 2.91 16 37 H 0.04 1.80 7.25 -2.38 -0.02 1.78 16 38 H 0.26 14.64 8.31 -92.71 -0.77 13.86 16 39 H 0.09 3.36 7.49 -2.39 -0.02 3.35 16 40 H 0.12 3.51 7.75 -2.39 -0.02 3.49 16 41 H 0.14 4.66 8.06 -2.91 -0.02 4.64 16 42 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 44 H 0.17 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -76.57 373.98 4.22 -72.35 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.96 Total: 29.25 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 6.76 Total: 14.57 kcal Atomic # 7 Polarization: -127.48 SS G_CDS: -5.33 Total: -132.81 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.06 Total: -25.39 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.88 Total: 42.02 kcal Total: -76.57 4.22 -72.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293168708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.535 kcal (2) G-P(sol) polarization free energy of solvation -76.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds