Wall clock time and date at job start Tue Mar 31 2020 15:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47381 * 2 1 4 4 C 1.37755 * 127.18631 * 268.39573 * 3 2 1 5 5 C 1.47104 * 126.50825 * 0.03519 * 4 3 2 6 6 C 1.36406 * 125.71352 * 194.97382 * 5 4 3 7 7 C 1.40487 * 107.87998 * 179.97438 * 6 5 4 8 8 O 1.35043 * 145.24312 * 179.97438 * 7 6 5 9 9 C 1.34540 * 109.61130 * 180.02562 * 8 7 6 10 10 C 1.34406 * 109.34828 * 0.05283 * 9 8 7 11 11 C 1.38780 * 107.24549 * 0.02562 * 7 6 5 12 12 N 1.37707 * 107.82792 * 359.75549 * 11 7 6 13 13 H 0.97004 * 125.76326 * 180.25510 * 12 11 7 14 14 N 1.31538 * 106.98044 * 180.02562 * 4 3 2 15 15 N 1.28500 * 109.92193 * 359.97438 * 14 4 3 16 16 C 1.31312 * 110.16766 * 0.02562 * 15 14 4 17 17 N 1.38476 * 126.35010 * 179.73663 * 16 15 14 18 18 C 1.46900 * 110.99859 * 305.98334 * 17 16 15 19 19 C 1.46899 * 110.99784 * 69.93848 * 17 16 15 20 20 H 1.08994 * 109.47300 * 54.99820 * 19 17 16 21 21 C 1.53004 * 109.46984 * 294.99919 * 19 17 16 22 22 C 1.50705 * 109.46937 * 175.00167 * 19 17 16 23 23 H 1.07999 * 119.99870 * 5.56811 * 22 19 17 24 24 C 1.37875 * 120.00011 * 185.57058 * 22 19 17 25 25 N 1.31516 * 119.99826 * 7.13147 * 24 22 19 26 26 Si 1.86803 * 120.00058 * 187.12865 * 24 22 19 27 27 H 1.48500 * 109.47052 * 94.95589 * 26 24 22 28 28 H 1.48500 * 109.46819 * 214.95859 * 26 24 22 29 29 H 1.48494 * 109.47062 * 334.95568 * 26 24 22 30 30 H 1.09003 * 109.47189 * 59.99807 * 1 2 3 31 31 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47327 * 300.00495 * 1 2 3 33 33 H 1.09002 * 109.47442 * 240.00046 * 2 1 3 34 34 H 1.09003 * 109.47299 * 119.99414 * 2 1 3 35 35 H 1.07998 * 126.05850 * 359.96337 * 6 5 4 36 36 H 1.08001 * 125.32970 * 180.02562 * 9 8 7 37 37 H 1.07999 * 126.43198 * 179.97438 * 10 9 8 38 38 H 1.09005 * 109.47196 * 54.44198 * 18 17 16 39 39 H 1.09004 * 109.46884 * 174.43613 * 18 17 16 40 40 H 1.08999 * 109.47411 * 294.44163 * 18 17 16 41 41 H 1.08997 * 109.46821 * 63.75004 * 21 19 17 42 42 H 1.08999 * 109.46923 * 183.74922 * 21 19 17 43 43 H 1.09002 * 109.47290 * 303.74779 * 21 19 17 44 44 H 0.96998 * 120.00048 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3249 2.1559 -1.0970 5 6 2.2238 1.7536 -2.5084 6 6 2.7893 2.4056 -3.5647 7 6 2.4569 1.7016 -4.7341 8 8 2.5883 1.6570 -6.0774 9 6 1.9281 0.5888 -6.5604 10 6 1.3560 -0.0783 -5.5435 11 6 1.6805 0.6159 -4.3541 12 7 1.5464 0.6524 -2.9841 13 1 1.0561 0.0119 -2.4452 14 7 2.7249 3.3238 -0.6429 15 7 2.6887 3.3298 0.6416 16 6 2.2651 2.1699 1.0880 17 7 2.1038 1.8106 2.4156 18 6 3.3416 2.0323 3.1751 19 6 0.9771 2.5314 3.0229 20 1 0.0776 2.3650 2.4304 21 6 1.2916 4.0283 3.0632 22 6 0.7554 2.0268 4.4255 23 1 1.4421 1.3141 4.8579 24 6 -0.3242 2.4749 5.1568 25 7 -1.2363 3.2315 4.5864 26 14 -0.4913 2.0075 6.9576 27 1 0.0797 3.0858 7.8040 28 1 -1.9270 1.8248 7.2903 29 1 0.2404 0.7402 7.2100 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.3866 3.3038 -3.5114 36 1 1.8671 0.3111 -7.6023 37 1 0.7606 -0.9761 -5.6198 38 1 3.6658 3.0652 3.0479 39 1 3.1595 1.8363 4.2318 40 1 4.1178 1.3602 2.8092 41 1 1.3864 4.4071 2.0455 42 1 0.4855 4.5553 3.5735 43 1 2.2271 4.1887 3.5992 44 1 -1.9956 3.5470 5.1009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263046790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:41 Heat of formation + Delta-G solvation = 164.817737 kcal Electronic energy + Delta-G solvation = -28345.546558 eV Core-core repulsion = 24496.300138 eV Total energy + Delta-G solvation = -3849.246419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.08953 -42.51796 -39.50336 -37.30760 -35.59255 -32.96888 -32.58915 -30.90700 -30.51341 -30.30055 -28.82700 -27.38537 -25.49979 -25.23623 -24.11901 -23.21895 -21.67392 -21.61437 -20.70700 -20.26556 -19.41897 -18.14067 -17.06399 -16.52208 -16.35593 -16.01483 -15.90730 -15.50086 -15.06360 -14.69971 -14.52338 -13.87416 -13.75673 -13.65458 -13.40577 -13.23455 -12.96844 -12.94554 -12.38697 -12.31864 -11.84468 -11.64230 -11.51290 -11.35848 -11.24817 -11.00492 -10.93430 -10.65302 -10.43839 -10.33061 -10.14903 -10.09191 -9.91476 -9.03938 -9.01594 -8.71850 -8.51425 -7.91208 -7.58492 -6.17018 -4.20390 0.92530 1.91329 2.26852 2.40834 2.52852 2.70030 2.85173 3.23006 3.30693 3.32148 3.34746 4.20951 4.25751 4.43429 4.46774 4.51728 4.79267 4.85247 5.05347 5.14756 5.17701 5.26994 5.32032 5.39458 5.50416 5.55428 5.66044 5.89323 6.01337 6.05060 6.10438 6.20853 6.24416 6.27673 6.51130 6.60563 6.71183 6.79101 6.92704 7.02405 7.03364 7.17174 7.37523 7.48299 7.66830 7.80969 8.06787 8.34868 8.82397 9.01154 9.43720 10.92247 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.002886 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.667342 B = 9700.966309 C =10147.615406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.106 3.894 3 N -0.469 5.469 4 C 0.209 3.791 5 C 0.153 3.847 6 C -0.109 4.109 7 C -0.026 4.026 8 O -0.168 6.168 9 C -0.001 4.001 10 C -0.196 4.196 11 C -0.007 4.007 12 N -0.549 5.549 13 H 0.417 0.583 14 N -0.254 5.254 15 N -0.306 5.306 16 C 0.393 3.607 17 N -0.470 5.470 18 C 0.041 3.959 19 C 0.224 3.776 20 H 0.043 0.957 21 C -0.168 4.168 22 C -0.511 4.511 23 H 0.067 0.933 24 C 0.065 3.935 25 N -0.887 5.887 26 Si 0.898 3.102 27 H -0.280 1.280 28 H -0.287 1.287 29 H -0.273 1.273 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.210 0.790 37 H 0.151 0.849 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.035 0.965 42 H 0.072 0.928 43 H 0.036 0.964 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 -9.526 -17.225 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.017 4.017 3 N -0.163 5.163 4 C -0.054 4.054 5 C 0.040 3.960 6 C -0.138 4.138 7 C -0.078 4.078 8 O -0.065 6.065 9 C -0.068 4.068 10 C -0.217 4.217 11 C -0.118 4.118 12 N -0.155 5.155 13 H 0.256 0.744 14 N -0.097 5.097 15 N -0.151 5.151 16 C 0.038 3.962 17 N -0.196 5.196 18 C -0.106 4.106 19 C 0.120 3.880 20 H 0.061 0.939 21 C -0.227 4.227 22 C -0.549 4.549 23 H 0.085 0.915 24 C -0.138 4.138 25 N -0.525 5.525 26 Si 0.725 3.275 27 H -0.206 1.206 28 H -0.213 1.213 29 H -0.197 1.197 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.130 0.870 35 H 0.179 0.821 36 H 0.227 0.773 37 H 0.169 0.831 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.958 -8.427 -17.174 19.763 hybrid contribution -1.067 -1.336 1.270 2.130 sum 3.892 -9.764 -15.905 19.064 Atomic orbital electron populations 1.22253 0.93436 1.03543 1.04178 1.21884 0.96127 0.79156 1.04494 1.46583 1.50251 1.13453 1.06005 1.21209 1.07848 0.90584 0.85773 1.16584 1.01283 0.90258 0.87848 1.19496 1.07109 1.02628 0.84534 1.19260 1.05941 1.00095 0.82513 1.84030 1.61561 1.42594 1.18319 1.23979 0.96539 0.87059 0.99264 1.20504 1.08790 1.03938 0.88472 1.18927 1.07030 1.01288 0.84518 1.41345 1.45660 1.23949 1.04578 0.74351 1.74439 1.16561 1.14887 1.03807 1.74815 1.21120 1.17099 1.02048 1.22928 0.97653 0.85930 0.89644 1.59446 1.08445 1.57828 0.93918 1.22311 0.88766 0.99917 0.99607 1.19441 0.85312 0.88603 0.94662 0.93899 1.22385 1.00958 0.99826 0.99517 1.20980 1.10694 1.26185 0.97043 0.91498 1.24908 0.95141 0.95152 0.98593 1.69964 1.11165 1.35216 1.36148 0.86486 0.77309 0.78841 0.84817 1.20574 1.21264 1.19748 0.92788 0.90057 0.89535 0.90408 0.86967 0.82134 0.77321 0.83120 0.93875 0.88863 0.93550 0.94655 0.90961 0.94533 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.85 37.16 0.37 -1.75 16 2 C 0.11 1.33 6.18 -4.04 -0.02 1.30 16 3 N -0.47 -7.83 2.84 -114.78 -0.33 -8.16 16 4 C 0.21 3.58 7.89 -153.69 -1.21 2.37 16 5 C 0.15 2.21 6.88 -82.26 -0.57 1.64 16 6 C -0.11 -1.53 10.74 -39.40 -0.42 -1.95 16 7 C -0.03 -0.34 8.22 -38.53 -0.32 -0.66 16 8 O -0.17 -1.97 10.68 2.98 0.03 -1.94 16 9 C 0.00 -0.01 12.03 29.38 0.35 0.35 16 10 C -0.20 -1.76 10.89 -39.70 -0.43 -2.19 16 11 C -0.01 -0.08 8.14 -83.79 -0.68 -0.76 16 12 N -0.55 -6.60 5.72 -7.21 -0.04 -6.64 16 13 H 0.42 4.13 5.67 -40.82 -0.23 3.90 16 14 N -0.25 -5.05 12.22 32.49 0.40 -4.66 16 15 N -0.31 -6.55 9.74 30.34 0.30 -6.26 16 16 C 0.39 7.86 6.21 -318.66 -1.98 5.88 16 17 N -0.47 -9.72 4.77 -176.03 -0.84 -10.56 16 18 C 0.04 0.78 8.66 60.06 0.52 1.30 16 19 C 0.22 5.41 2.18 -68.86 -0.15 5.26 16 20 H 0.04 1.17 8.07 -51.93 -0.42 0.75 16 21 C -0.17 -4.09 8.29 37.16 0.31 -3.79 16 22 C -0.51 -13.01 7.86 -34.44 -0.27 -13.28 16 23 H 0.07 1.67 6.60 -52.49 -0.35 1.32 16 24 C 0.06 1.70 5.21 -17.82 -0.09 1.61 16 25 N -0.89 -24.49 12.05 55.43 0.67 -23.82 16 26 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 29 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 30 H 0.05 0.63 7.51 -51.93 -0.39 0.24 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.08 0.75 6.22 -51.93 -0.32 0.43 16 34 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.16 2.09 8.06 -52.49 -0.42 1.67 16 36 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.04 0.84 6.47 -51.93 -0.34 0.51 16 39 H 0.09 1.78 6.18 -51.93 -0.32 1.46 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.86 6.14 -51.93 -0.32 0.54 16 42 H 0.07 1.92 6.74 -51.93 -0.35 1.57 16 43 H 0.04 0.85 6.40 -51.93 -0.33 0.52 16 44 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -31.33 359.16 -9.49 -40.82 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.46 Total: 5.21 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -4.60 Total: -4.67 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.15 Total: -60.09 kcal Atomic # 8 Polarization: -1.97 SS G_CDS: 0.03 Total: -1.94 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.33 -9.49 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263046790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.642 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds