Wall clock time and date at job start Tue Mar 31 2020 15:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47381 * 2 1 4 4 C 1.37755 * 127.18631 * 268.39573 * 3 2 1 5 5 C 1.47104 * 126.50825 * 0.03519 * 4 3 2 6 6 C 1.36406 * 125.71352 * 194.97382 * 5 4 3 7 7 C 1.40487 * 107.87998 * 179.97438 * 6 5 4 8 8 O 1.35043 * 145.24312 * 179.97438 * 7 6 5 9 9 C 1.34540 * 109.61130 * 180.02562 * 8 7 6 10 10 C 1.34406 * 109.34828 * 0.05283 * 9 8 7 11 11 C 1.38780 * 107.24549 * 0.02562 * 7 6 5 12 12 N 1.37707 * 107.82792 * 359.75549 * 11 7 6 13 13 H 0.97004 * 125.76326 * 180.25510 * 12 11 7 14 14 N 1.31538 * 106.98044 * 180.02562 * 4 3 2 15 15 N 1.28500 * 109.92193 * 359.97438 * 14 4 3 16 16 C 1.31312 * 110.16766 * 0.02562 * 15 14 4 17 17 N 1.38476 * 126.35010 * 179.73663 * 16 15 14 18 18 C 1.46900 * 110.99859 * 305.98334 * 17 16 15 19 19 C 1.46899 * 110.99784 * 69.93848 * 17 16 15 20 20 H 1.08994 * 109.47300 * 54.99820 * 19 17 16 21 21 C 1.53004 * 109.46984 * 294.99919 * 19 17 16 22 22 C 1.50705 * 109.46937 * 175.00167 * 19 17 16 23 23 H 1.07999 * 119.99870 * 5.56811 * 22 19 17 24 24 C 1.37875 * 120.00011 * 185.57058 * 22 19 17 25 25 N 1.31516 * 119.99826 * 7.13147 * 24 22 19 26 26 Si 1.86803 * 120.00058 * 187.12865 * 24 22 19 27 27 H 1.48500 * 109.47052 * 94.95589 * 26 24 22 28 28 H 1.48500 * 109.46819 * 214.95859 * 26 24 22 29 29 H 1.48494 * 109.47062 * 334.95568 * 26 24 22 30 30 H 1.09003 * 109.47189 * 59.99807 * 1 2 3 31 31 H 1.08995 * 109.47303 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47327 * 300.00495 * 1 2 3 33 33 H 1.09002 * 109.47442 * 240.00046 * 2 1 3 34 34 H 1.09003 * 109.47299 * 119.99414 * 2 1 3 35 35 H 1.07998 * 126.05850 * 359.96337 * 6 5 4 36 36 H 1.08001 * 125.32970 * 180.02562 * 9 8 7 37 37 H 1.07999 * 126.43198 * 179.97438 * 10 9 8 38 38 H 1.09005 * 109.47196 * 54.44198 * 18 17 16 39 39 H 1.09004 * 109.46884 * 174.43613 * 18 17 16 40 40 H 1.08999 * 109.47411 * 294.44163 * 18 17 16 41 41 H 1.08997 * 109.46821 * 63.75004 * 21 19 17 42 42 H 1.08999 * 109.46923 * 183.74922 * 21 19 17 43 43 H 1.09002 * 109.47290 * 303.74779 * 21 19 17 44 44 H 0.96998 * 120.00048 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3249 2.1559 -1.0970 5 6 2.2238 1.7536 -2.5084 6 6 2.7893 2.4056 -3.5647 7 6 2.4569 1.7016 -4.7341 8 8 2.5883 1.6570 -6.0774 9 6 1.9281 0.5888 -6.5604 10 6 1.3560 -0.0783 -5.5435 11 6 1.6805 0.6159 -4.3541 12 7 1.5464 0.6524 -2.9841 13 1 1.0561 0.0119 -2.4452 14 7 2.7249 3.3238 -0.6429 15 7 2.6887 3.3298 0.6416 16 6 2.2651 2.1699 1.0880 17 7 2.1038 1.8106 2.4156 18 6 3.3416 2.0323 3.1751 19 6 0.9771 2.5314 3.0229 20 1 0.0776 2.3650 2.4304 21 6 1.2916 4.0283 3.0632 22 6 0.7554 2.0268 4.4255 23 1 1.4421 1.3141 4.8579 24 6 -0.3242 2.4749 5.1568 25 7 -1.2363 3.2315 4.5864 26 14 -0.4913 2.0075 6.9576 27 1 0.0797 3.0858 7.8040 28 1 -1.9270 1.8248 7.2903 29 1 0.2404 0.7402 7.2100 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 3.3866 3.3038 -3.5114 36 1 1.8671 0.3111 -7.6023 37 1 0.7606 -0.9761 -5.6198 38 1 3.6658 3.0652 3.0479 39 1 3.1595 1.8363 4.2318 40 1 4.1178 1.3602 2.8092 41 1 1.3864 4.4071 2.0455 42 1 0.4855 4.5553 3.5735 43 1 2.2271 4.1887 3.5992 44 1 -1.9956 3.5470 5.1009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263046790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:41 Heat of formation + Delta-G solvation = 147.103315 kcal Electronic energy + Delta-G solvation = -28346.314713 eV Core-core repulsion = 24496.300138 eV Total energy + Delta-G solvation = -3850.014574 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.15348 -43.74423 -40.46598 -39.01070 -36.82757 -34.85709 -33.51241 -31.99331 -31.74750 -31.56866 -30.55432 -28.54065 -27.23298 -27.04949 -25.31336 -24.31462 -23.28857 -22.53876 -21.74789 -21.39405 -20.94123 -19.05408 -18.49858 -18.05157 -17.69051 -17.22015 -17.11894 -16.79833 -16.50249 -16.18405 -15.58303 -15.47508 -14.97089 -14.64495 -14.56182 -14.52486 -14.20415 -14.18621 -13.62951 -13.54299 -13.36099 -13.08409 -12.93986 -12.77275 -12.76064 -12.67403 -12.51741 -12.40612 -12.15044 -12.02660 -11.70032 -11.42126 -11.14794 -10.96604 -10.53947 -10.31697 -9.65501 -9.56400 -8.67375 -8.17933 -6.27744 -0.16007 0.82466 1.04370 1.41017 1.43703 1.44738 1.47128 1.56551 1.71043 1.93893 2.04720 2.41257 2.94407 3.14762 3.16638 3.42335 3.66770 3.82705 3.96879 3.99854 4.05433 4.13151 4.32795 4.35927 4.45463 4.60283 4.60730 4.63474 4.70089 4.76982 4.88270 4.95573 4.98156 5.01876 5.06383 5.07217 5.08784 5.31286 5.46546 5.52686 5.55024 5.62909 5.73409 5.95657 6.12604 6.14423 6.31516 6.55133 6.81698 7.40405 7.54961 8.91819 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.002886 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.667342 B = 9700.966309 C =10147.615406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 N -0.464 5.464 4 C 0.234 3.766 5 C 0.122 3.878 6 C -0.106 4.106 7 C -0.063 4.063 8 O -0.183 6.183 9 C 0.024 3.976 10 C -0.209 4.209 11 C 0.004 3.996 12 N -0.538 5.538 13 H 0.426 0.574 14 N -0.293 5.293 15 N -0.335 5.335 16 C 0.371 3.629 17 N -0.463 5.463 18 C 0.044 3.956 19 C 0.237 3.763 20 H 0.005 0.995 21 C -0.151 4.151 22 C -0.516 4.516 23 H 0.074 0.926 24 C 0.016 3.984 25 N -0.922 5.922 26 Si 0.964 3.036 27 H -0.278 1.278 28 H -0.288 1.288 29 H -0.260 1.260 30 H 0.055 0.945 31 H 0.119 0.881 32 H 0.041 0.959 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.159 0.841 36 H 0.260 0.740 37 H 0.183 0.817 38 H 0.031 0.969 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.045 0.955 43 H 0.042 0.958 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -12.485 -19.166 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.022 4.022 3 N -0.157 5.157 4 C -0.031 4.031 5 C 0.009 3.991 6 C -0.135 4.135 7 C -0.115 4.115 8 O -0.081 6.081 9 C -0.043 4.043 10 C -0.230 4.230 11 C -0.108 4.108 12 N -0.145 5.145 13 H 0.268 0.732 14 N -0.135 5.135 15 N -0.179 5.179 16 C 0.015 3.985 17 N -0.189 5.189 18 C -0.103 4.103 19 C 0.131 3.869 20 H 0.023 0.977 21 C -0.210 4.210 22 C -0.554 4.554 23 H 0.092 0.908 24 C -0.183 4.183 25 N -0.561 5.561 26 Si 0.789 3.211 27 H -0.204 1.204 28 H -0.214 1.214 29 H -0.184 1.184 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.061 0.939 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.176 0.824 36 H 0.276 0.724 37 H 0.201 0.799 38 H 0.050 0.950 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.131 -11.414 -19.105 22.839 hybrid contribution -1.109 -0.484 1.535 1.955 sum 4.022 -11.898 -17.570 21.597 Atomic orbital electron populations 1.22200 0.93009 1.05322 1.02035 1.22252 0.96410 0.77190 1.06315 1.46754 1.49529 1.14596 1.04838 1.21582 1.05047 0.89612 0.86878 1.16304 1.04048 0.92244 0.86462 1.19606 1.06238 1.02326 0.85333 1.19272 1.07779 1.01130 0.83285 1.84045 1.62409 1.44194 1.17475 1.25104 0.93321 0.84645 1.01209 1.20982 1.09847 1.05267 0.86917 1.19492 1.05566 1.00952 0.84782 1.41221 1.45188 1.23288 1.04850 0.73201 1.74343 1.19168 1.16691 1.03278 1.74666 1.21961 1.18266 1.03052 1.22819 0.99281 0.86609 0.89790 1.59317 1.08141 1.56974 0.94484 1.22331 0.88619 0.99933 0.99379 1.19067 0.85401 0.88476 0.93982 0.97669 1.22197 1.00046 1.00078 0.98706 1.21254 1.10640 1.26002 0.97521 0.90774 1.25722 0.94834 0.95115 1.02649 1.70104 1.11773 1.36541 1.37704 0.85454 0.77117 0.78912 0.79639 1.20405 1.21367 1.18406 0.92550 0.86254 0.93940 0.86944 0.86724 0.82384 0.72388 0.79924 0.95018 0.89071 0.90927 0.95331 0.93589 0.93898 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.91 9.85 71.98 0.71 -3.20 16 2 C 0.10 2.37 6.18 86.38 0.53 2.90 16 3 N -0.46 -15.65 2.84 -517.04 -1.47 -17.12 16 4 C 0.23 8.14 7.89 135.85 1.07 9.21 16 5 C 0.12 3.48 6.88 40.11 0.28 3.75 16 6 C -0.11 -2.97 10.74 22.39 0.24 -2.73 16 7 C -0.06 -1.59 8.22 22.95 0.19 -1.40 16 8 O -0.18 -3.85 10.68 -12.24 -0.13 -3.98 16 9 C 0.02 0.28 12.03 66.94 0.81 1.09 16 10 C -0.21 -2.88 10.89 22.19 0.24 -2.64 16 11 C 0.00 0.09 8.14 39.15 0.32 0.41 16 12 N -0.54 -11.95 5.72 -176.71 -1.01 -12.96 16 13 H 0.43 7.39 5.67 -92.71 -0.53 6.86 16 14 N -0.29 -12.14 12.22 -51.11 -0.62 -12.76 16 15 N -0.34 -14.98 9.74 -57.91 -0.56 -15.54 16 16 C 0.37 15.31 6.21 260.04 1.62 16.93 16 17 N -0.46 -19.63 4.77 -710.84 -3.39 -23.02 16 18 C 0.04 1.69 8.66 127.69 1.11 2.79 16 19 C 0.24 11.89 2.18 44.17 0.10 11.99 16 20 H 0.01 0.31 8.07 -2.39 -0.02 0.29 16 21 C -0.15 -7.73 8.29 71.98 0.60 -7.14 16 22 C -0.52 -26.70 7.86 25.60 0.20 -26.49 16 23 H 0.07 3.67 6.60 -2.91 -0.02 3.65 16 24 C 0.02 0.86 5.21 84.65 0.44 1.31 16 25 N -0.92 -52.51 12.05 21.45 0.26 -52.25 16 26 Si 0.96 41.72 29.54 68.60 2.03 43.75 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 29 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 30 H 0.06 1.27 7.51 -2.39 -0.02 1.25 16 31 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 1.89 6.22 -2.39 -0.01 1.88 16 34 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.26 0.12 8.06 -2.91 -0.02 0.10 16 37 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.03 1.26 6.47 -2.38 -0.02 1.24 16 39 H 0.09 3.46 6.18 -2.38 -0.01 3.45 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.03 1.46 6.14 -2.39 -0.01 1.45 16 42 H 0.05 2.56 6.74 -2.39 -0.02 2.54 16 43 H 0.04 2.08 6.40 -2.39 -0.02 2.06 16 44 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -72.05 359.16 4.07 -67.98 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.53 Total: 19.14 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 8.44 Total: 6.77 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -6.80 Total: -133.66 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.13 Total: -3.98 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -72.05 4.07 -67.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263046790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 215.088 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds