Wall clock time and date at job start Tue Mar 31 2020 15:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46609 * 2 1 4 4 C 1.53005 * 109.46879 * 240.00591 * 2 1 3 5 5 N 1.46503 * 109.46779 * 184.99808 * 4 2 1 6 6 C 1.46496 * 119.99998 * 269.99444 * 5 4 2 7 7 C 1.36931 * 119.99927 * 90.00031 * 5 4 2 8 8 H 1.08006 * 120.00558 * 22.31490 * 7 5 4 9 9 C 1.38817 * 120.00122 * 202.31824 * 7 5 4 10 10 N 1.31626 * 119.99502 * 11.39569 * 9 7 5 11 11 Si 1.86791 * 120.00334 * 191.39771 * 9 7 5 12 12 H 1.48496 * 109.47659 * 59.99962 * 11 9 7 13 13 H 1.48506 * 109.47124 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47271 * 299.99864 * 11 9 7 15 15 N 1.46497 * 109.47460 * 120.00456 * 2 1 3 16 16 C 1.34774 * 119.99455 * 275.00062 * 15 2 1 17 17 O 1.21618 * 120.00490 * 359.97438 * 16 15 2 18 18 C 1.47323 * 119.99933 * 179.97438 * 16 15 2 19 19 C 1.37915 * 126.80394 * 0.14492 * 18 16 15 20 20 N 1.34193 * 107.89874 * 180.24591 * 19 18 16 21 21 H 0.96994 * 125.16724 * 179.78917 * 20 19 18 22 22 N 1.39776 * 109.66401 * 359.75883 * 20 19 18 23 23 C 1.31381 * 109.07187 * 359.97438 * 22 20 19 24 24 C 1.48245 * 126.51608 * 179.97438 * 23 22 20 25 25 C 1.39377 * 119.72857 * 335.02215 * 24 23 22 26 26 C 1.38389 * 119.06413 * 180.22881 * 25 24 23 27 27 C 1.38794 * 118.51434 * 359.53193 * 26 25 24 28 28 C 1.38253 * 119.37289 * 0.44984 * 27 26 25 29 29 N 1.31756 * 120.89550 * 359.79103 * 28 27 26 30 30 H 1.09002 * 109.47080 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47067 * 299.99373 * 1 2 3 32 32 H 1.08997 * 109.47623 * 60.00018 * 1 2 3 33 33 H 1.09000 * 109.46786 * 304.99166 * 4 2 1 34 34 H 1.08996 * 109.47475 * 64.99687 * 4 2 1 35 35 H 1.09001 * 109.47124 * 94.22706 * 6 5 4 36 36 H 1.08999 * 109.47655 * 214.23126 * 6 5 4 37 37 H 1.09006 * 109.47098 * 334.23123 * 6 5 4 38 38 H 0.96995 * 119.99573 * 179.97438 * 10 9 7 39 39 H 0.96997 * 120.00024 * 94.99963 * 15 2 1 40 40 H 1.08002 * 126.05172 * 359.97438 * 19 18 16 41 41 H 1.08002 * 120.47099 * 359.95806 * 25 24 23 42 42 H 1.08006 * 120.74264 * 179.73129 * 26 25 24 43 43 H 1.07996 * 120.31470 * 180.21584 * 27 26 25 44 44 H 1.08001 * 119.55059 * 179.76777 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8262 -1.1907 6 6 4.3342 0.2342 -1.7614 7 6 4.0849 -1.9157 -0.6026 8 1 3.5337 -2.8398 -0.5086 9 6 5.3864 -1.8326 -0.1269 10 7 5.9795 -0.6612 -0.0340 11 14 6.2960 -3.3829 0.3811 12 1 6.3971 -4.3012 -0.7815 13 1 7.6590 -3.0259 0.8504 14 1 5.5551 -4.0543 1.4791 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0183 2.3570 17 8 1.8582 1.1618 2.4116 18 6 2.6377 -0.7129 3.5600 19 6 3.0060 -2.0385 3.6562 20 7 3.3870 -2.2699 4.9220 21 1 3.6926 -3.1236 5.2662 22 7 3.2770 -1.0934 5.6688 23 6 2.8345 -0.1312 4.8913 24 6 2.5764 1.2740 5.2867 25 6 2.2935 1.5768 6.6175 26 6 2.0501 2.8925 6.9705 27 6 2.1072 3.8652 5.9820 28 6 2.3940 3.4942 4.6815 29 7 2.6170 2.2333 4.3711 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6054 -1.7197 -1.2952 34 1 1.7516 -0.1582 -2.1370 35 1 4.6022 0.9457 -0.9803 36 1 5.2403 -0.2026 -2.1814 37 1 3.7809 0.7486 -2.5472 38 1 6.8888 -0.6031 0.2987 39 1 2.2491 -1.6318 1.1524 40 1 2.9867 -2.7633 2.8558 41 1 2.2604 0.7950 7.3619 42 1 1.8239 3.1570 7.9930 43 1 1.9256 4.9015 6.2259 44 1 2.4355 4.2483 3.9093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:46 Heat of formation + Delta-G solvation = 112.613540 kcal Electronic energy + Delta-G solvation = -28716.187853 eV Core-core repulsion = 24864.677690 eV Total energy + Delta-G solvation = -3851.510163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90919 -39.57639 -38.41043 -36.02530 -33.78401 -32.77812 -32.19276 -31.44622 -30.46813 -29.87407 -28.96538 -26.08926 -25.54118 -24.10661 -23.40980 -22.87120 -21.52012 -20.51143 -19.86080 -19.17316 -18.03182 -16.71245 -16.61270 -15.82073 -15.76400 -15.43496 -15.15031 -14.82575 -14.69093 -13.96306 -13.80242 -13.55517 -13.47560 -13.28481 -13.06951 -12.83660 -12.72200 -12.31623 -12.10995 -11.72605 -11.66416 -11.31155 -11.21008 -10.89354 -10.84861 -10.70806 -10.30488 -10.14756 -10.11316 -10.05215 -9.78933 -9.62198 -9.13208 -8.72973 -8.65507 -8.54512 -8.26453 -7.91742 -6.72079 -5.70237 -3.15650 0.93279 1.50327 1.90880 2.53948 2.80035 3.25058 3.37360 3.39620 4.03089 4.12075 4.32131 4.40120 4.45477 4.72714 4.97959 4.99216 5.15678 5.24850 5.39033 5.40303 5.57594 5.63063 5.75950 5.78504 5.84356 5.91295 6.06327 6.11668 6.20118 6.24773 6.27327 6.37426 6.49873 6.55937 6.68367 6.82653 6.85016 7.03634 7.24753 7.43519 7.56150 7.61711 7.72301 7.86696 8.34289 8.40192 8.62321 9.23671 9.35122 9.88797 10.39806 11.33917 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.004678 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.557845 B = 5983.388710 C = 7013.498451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.165 3.835 7 C -0.256 4.256 8 H 0.064 0.936 9 C 0.009 3.991 10 N -0.894 5.894 11 Si 0.895 3.105 12 H -0.285 1.285 13 H -0.292 1.292 14 H -0.287 1.287 15 N -0.692 5.692 16 C 0.585 3.415 17 O -0.521 6.521 18 C -0.238 4.238 19 C 0.103 3.897 20 N -0.465 5.465 21 H 0.442 0.558 22 N -0.283 5.283 23 C 0.163 3.837 24 C 0.195 3.805 25 C -0.146 4.146 26 C -0.088 4.088 27 C -0.172 4.172 28 C 0.103 3.897 29 N -0.399 5.399 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.029 0.971 36 H 0.043 0.957 37 H -0.005 1.005 38 H 0.252 0.748 39 H 0.396 0.604 40 H 0.189 0.811 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.326 1.229 10.122 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.020 3.980 7 C -0.386 4.386 8 H 0.082 0.918 9 C -0.191 4.191 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.212 1.212 13 H -0.218 1.218 14 H -0.213 1.213 15 N -0.342 5.342 16 C 0.371 3.629 17 O -0.397 6.397 18 C -0.253 4.253 19 C -0.046 4.046 20 N -0.172 5.172 21 H 0.286 0.714 22 N -0.106 5.106 23 C -0.006 4.006 24 C 0.056 3.944 25 C -0.168 4.168 26 C -0.114 4.114 27 C -0.192 4.192 28 C -0.056 4.056 29 N -0.107 5.107 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.013 0.987 38 H 0.062 0.938 39 H 0.230 0.770 40 H 0.206 0.794 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.762 1.591 10.437 13.720 hybrid contribution 0.663 -1.442 0.583 1.691 sum -8.099 0.149 11.020 13.676 Atomic orbital electron populations 1.22158 0.97320 1.00944 1.01328 1.21693 0.91399 0.98415 0.86890 0.90555 1.21178 0.85912 0.97733 0.93763 1.43843 0.98910 1.22570 1.66603 1.20781 0.92843 0.90501 0.93845 1.18977 0.97076 0.89340 1.33169 0.91819 1.24977 0.98677 0.95824 0.99598 1.70052 1.13308 1.21418 1.49052 0.86523 0.79513 0.83159 0.78261 1.21166 1.21822 1.21337 1.45506 1.66524 1.13778 1.08434 1.16977 0.77892 0.86228 0.81825 1.90788 1.50088 1.14270 1.84573 1.21489 1.15761 0.92719 0.95318 1.23134 0.95445 0.97793 0.88201 1.45820 1.53137 1.10988 1.07281 0.71418 1.77131 1.23526 0.91427 1.18481 1.21267 0.97016 0.91569 0.90725 1.18401 0.97416 0.89580 0.88985 1.22054 1.00679 0.97575 0.96484 1.21413 0.97745 0.92512 0.99766 1.22266 1.01703 1.00487 0.94772 1.22841 0.94996 0.92920 0.94890 1.67999 1.08568 0.99821 1.34339 0.93311 0.92986 0.92587 0.93590 0.93194 0.95306 0.93871 0.98667 0.93761 0.76964 0.79385 0.84759 0.84959 0.85015 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 37.16 0.35 -2.12 16 2 C 0.12 2.36 2.88 -67.93 -0.20 2.17 16 3 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 4 C 0.14 2.75 5.36 -4.04 -0.02 2.72 16 5 N -0.60 -14.15 2.82 -181.11 -0.51 -14.66 16 6 C 0.16 4.06 9.01 59.84 0.54 4.60 16 7 C -0.26 -6.37 8.02 -15.06 -0.12 -6.49 16 8 H 0.06 1.50 7.84 -52.48 -0.41 1.09 16 9 C 0.01 0.23 5.13 -17.43 -0.09 0.14 16 10 N -0.89 -25.49 10.59 55.49 0.59 -24.90 16 11 Si 0.89 20.52 29.57 -169.99 -5.03 15.49 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 15 N -0.69 -13.61 4.48 -54.91 -0.25 -13.85 16 16 C 0.59 12.44 7.77 -12.57 -0.10 12.34 16 17 O -0.52 -12.22 13.35 5.26 0.07 -12.15 16 18 C -0.24 -4.57 6.31 -102.94 -0.65 -5.22 16 19 C 0.10 1.60 11.50 -16.64 -0.19 1.41 16 20 N -0.47 -6.45 7.20 30.81 0.22 -6.23 16 21 H 0.44 4.29 8.96 -182.85 -1.64 2.65 16 22 N -0.28 -4.67 12.53 34.57 0.43 -4.24 16 23 C 0.16 3.04 7.11 -80.57 -0.57 2.47 16 24 C 0.19 3.51 6.62 -82.96 -0.55 2.96 16 25 C -0.15 -2.07 9.75 -39.10 -0.38 -2.45 16 26 C -0.09 -1.02 10.17 -39.32 -0.40 -1.42 16 27 C -0.17 -2.02 10.11 -39.37 -0.40 -2.42 16 28 C 0.10 1.56 11.17 -17.58 -0.20 1.36 16 29 N -0.40 -7.69 7.08 -9.79 -0.07 -7.76 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.83 8.03 -51.93 -0.42 0.41 16 34 H 0.05 0.89 7.86 -51.93 -0.41 0.48 16 35 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 36 H 0.04 1.13 7.19 -51.93 -0.37 0.76 16 37 H -0.01 -0.11 7.84 -51.93 -0.41 -0.52 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.40 7.44 6.35 -40.82 -0.26 7.18 16 40 H 0.19 2.48 7.48 -52.49 -0.39 2.08 16 41 H 0.13 1.67 8.04 -52.49 -0.42 1.25 16 42 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 43 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -34.12 370.83 -9.10 -43.22 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.18 Total: 9.45 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: -2.97 Total: 10.04 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: 0.42 Total: -71.64 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.12 -9.10 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.837 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds