Wall clock time and date at job start Tue Mar 31 2020 15:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46609 * 2 1 4 4 C 1.53005 * 109.46879 * 240.00591 * 2 1 3 5 5 N 1.46503 * 109.46779 * 184.99808 * 4 2 1 6 6 C 1.46496 * 119.99998 * 269.99444 * 5 4 2 7 7 C 1.36931 * 119.99927 * 90.00031 * 5 4 2 8 8 H 1.08006 * 120.00558 * 22.31490 * 7 5 4 9 9 C 1.38817 * 120.00122 * 202.31824 * 7 5 4 10 10 N 1.31626 * 119.99502 * 11.39569 * 9 7 5 11 11 Si 1.86791 * 120.00334 * 191.39771 * 9 7 5 12 12 H 1.48496 * 109.47659 * 59.99962 * 11 9 7 13 13 H 1.48506 * 109.47124 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47271 * 299.99864 * 11 9 7 15 15 N 1.46497 * 109.47460 * 120.00456 * 2 1 3 16 16 C 1.34774 * 119.99455 * 275.00062 * 15 2 1 17 17 O 1.21618 * 120.00490 * 359.97438 * 16 15 2 18 18 C 1.47323 * 119.99933 * 179.97438 * 16 15 2 19 19 C 1.37915 * 126.80394 * 0.14492 * 18 16 15 20 20 N 1.34193 * 107.89874 * 180.24591 * 19 18 16 21 21 H 0.96994 * 125.16724 * 179.78917 * 20 19 18 22 22 N 1.39776 * 109.66401 * 359.75883 * 20 19 18 23 23 C 1.31381 * 109.07187 * 359.97438 * 22 20 19 24 24 C 1.48245 * 126.51608 * 179.97438 * 23 22 20 25 25 C 1.39377 * 119.72857 * 335.02215 * 24 23 22 26 26 C 1.38389 * 119.06413 * 180.22881 * 25 24 23 27 27 C 1.38794 * 118.51434 * 359.53193 * 26 25 24 28 28 C 1.38253 * 119.37289 * 0.44984 * 27 26 25 29 29 N 1.31756 * 120.89550 * 359.79103 * 28 27 26 30 30 H 1.09002 * 109.47080 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47067 * 299.99373 * 1 2 3 32 32 H 1.08997 * 109.47623 * 60.00018 * 1 2 3 33 33 H 1.09000 * 109.46786 * 304.99166 * 4 2 1 34 34 H 1.08996 * 109.47475 * 64.99687 * 4 2 1 35 35 H 1.09001 * 109.47124 * 94.22706 * 6 5 4 36 36 H 1.08999 * 109.47655 * 214.23126 * 6 5 4 37 37 H 1.09006 * 109.47098 * 334.23123 * 6 5 4 38 38 H 0.96995 * 119.99573 * 179.97438 * 10 9 7 39 39 H 0.96997 * 120.00024 * 94.99963 * 15 2 1 40 40 H 1.08002 * 126.05172 * 359.97438 * 19 18 16 41 41 H 1.08002 * 120.47099 * 359.95806 * 25 24 23 42 42 H 1.08006 * 120.74264 * 179.73129 * 26 25 24 43 43 H 1.07996 * 120.31470 * 180.21584 * 27 26 25 44 44 H 1.08001 * 119.55059 * 179.76777 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5000 -0.8262 -1.1907 6 6 4.3342 0.2342 -1.7614 7 6 4.0849 -1.9157 -0.6026 8 1 3.5337 -2.8398 -0.5086 9 6 5.3864 -1.8326 -0.1269 10 7 5.9795 -0.6612 -0.0340 11 14 6.2960 -3.3829 0.3811 12 1 6.3971 -4.3012 -0.7815 13 1 7.6590 -3.0259 0.8504 14 1 5.5551 -4.0543 1.4791 15 7 2.0184 -0.6907 1.1961 16 6 2.1471 -0.0183 2.3570 17 8 1.8582 1.1618 2.4116 18 6 2.6377 -0.7129 3.5600 19 6 3.0060 -2.0385 3.6562 20 7 3.3870 -2.2699 4.9220 21 1 3.6926 -3.1236 5.2662 22 7 3.2770 -1.0934 5.6688 23 6 2.8345 -0.1312 4.8913 24 6 2.5764 1.2740 5.2867 25 6 2.2935 1.5768 6.6175 26 6 2.0501 2.8925 6.9705 27 6 2.1072 3.8652 5.9820 28 6 2.3940 3.4942 4.6815 29 7 2.6170 2.2333 4.3711 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6054 -1.7197 -1.2952 34 1 1.7516 -0.1582 -2.1370 35 1 4.6022 0.9457 -0.9803 36 1 5.2403 -0.2026 -2.1814 37 1 3.7809 0.7486 -2.5472 38 1 6.8888 -0.6031 0.2987 39 1 2.2491 -1.6318 1.1524 40 1 2.9867 -2.7633 2.8558 41 1 2.2604 0.7950 7.3619 42 1 1.8239 3.1570 7.9930 43 1 1.9256 4.9015 6.2259 44 1 2.4355 4.2483 3.9093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754312413.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:45 Heat of formation + Delta-G solvation = 89.069342 kcal Electronic energy + Delta-G solvation = -28717.208806 eV Core-core repulsion = 24864.677690 eV Total energy + Delta-G solvation = -3852.531116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.16258 -40.68519 -39.97883 -37.77230 -35.50656 -33.94381 -33.29850 -33.16200 -32.11196 -31.02342 -30.35377 -27.98009 -27.29007 -25.25370 -24.61634 -24.20282 -23.24337 -21.87685 -21.22266 -20.67774 -19.37178 -18.57567 -17.67816 -17.27850 -16.94450 -16.81451 -16.50977 -16.48054 -16.05142 -15.59923 -15.17260 -15.06360 -14.80717 -14.70894 -14.44654 -14.40999 -14.07505 -13.77965 -13.53721 -13.20394 -13.02701 -12.78017 -12.65881 -12.62710 -12.51910 -12.18537 -12.08306 -11.94631 -11.85807 -11.59160 -11.25366 -10.76394 -10.52881 -10.50583 -10.00124 -9.93962 -9.60154 -9.39314 -8.68553 -7.69884 -5.16927 -0.19226 0.46908 0.62268 1.26265 1.44916 1.53930 1.58543 1.68521 2.54198 2.60011 2.83873 3.04013 3.11845 3.46354 3.58789 3.80321 3.88238 4.06745 4.11772 4.23516 4.24653 4.30051 4.45717 4.48633 4.60559 4.66806 4.69036 4.83038 4.86165 4.90790 5.00353 5.07035 5.11314 5.23010 5.28533 5.32787 5.38087 5.50515 5.71913 5.79566 5.82019 6.03282 6.16860 6.39053 6.41424 7.07824 7.23446 7.23599 7.79537 7.97519 8.45117 9.34069 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.004678 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.557845 B = 5983.388710 C = 7013.498451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.128 3.872 3 H 0.034 0.966 4 C 0.143 3.857 5 N -0.610 5.610 6 C 0.181 3.819 7 C -0.244 4.244 8 H 0.086 0.914 9 C -0.048 4.048 10 N -0.937 5.937 11 Si 0.951 3.049 12 H -0.283 1.283 13 H -0.316 1.316 14 H -0.254 1.254 15 N -0.690 5.690 16 C 0.576 3.424 17 O -0.554 6.554 18 C -0.285 4.285 19 C 0.123 3.877 20 N -0.445 5.445 21 H 0.461 0.539 22 N -0.286 5.286 23 C 0.146 3.854 24 C 0.155 3.845 25 C -0.145 4.145 26 C -0.080 4.080 27 C -0.152 4.152 28 C 0.075 3.925 29 N -0.453 5.453 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.069 0.931 35 H -0.012 1.012 36 H 0.018 0.982 37 H 0.025 0.975 38 H 0.237 0.763 39 H 0.400 0.600 40 H 0.216 0.784 41 H 0.149 0.851 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.088 -0.368 11.434 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.020 3.980 3 H 0.052 0.948 4 C 0.016 3.984 5 N -0.332 5.332 6 C 0.036 3.964 7 C -0.374 4.374 8 H 0.103 0.897 9 C -0.243 4.243 10 N -0.584 5.584 11 Si 0.781 3.219 12 H -0.209 1.209 13 H -0.244 1.244 14 H -0.178 1.178 15 N -0.340 5.340 16 C 0.363 3.637 17 O -0.433 6.433 18 C -0.300 4.300 19 C -0.027 4.027 20 N -0.154 5.154 21 H 0.310 0.690 22 N -0.110 5.110 23 C -0.022 4.022 24 C 0.017 3.983 25 C -0.166 4.166 26 C -0.105 4.105 27 C -0.172 4.172 28 C -0.084 4.084 29 N -0.163 5.163 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.006 0.994 36 H 0.037 0.963 37 H 0.043 0.957 38 H 0.047 0.953 39 H 0.235 0.765 40 H 0.233 0.767 41 H 0.167 0.833 42 H 0.196 0.804 43 H 0.192 0.808 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.571 -0.073 11.765 15.817 hybrid contribution 1.155 -0.888 0.160 1.465 sum -9.417 -0.960 11.925 15.225 Atomic orbital electron populations 1.22001 0.94233 1.02435 1.01560 1.21578 0.93681 0.96006 0.86715 0.94775 1.21372 0.83241 0.99373 0.94390 1.44098 1.00803 1.21972 1.66369 1.20449 0.92705 0.90054 0.93212 1.19440 0.96874 0.90232 1.30861 0.89660 1.25683 0.99861 0.98059 1.00668 1.70298 1.12770 1.23838 1.51517 0.85581 0.77392 0.80146 0.78812 1.20938 1.24369 1.17831 1.45495 1.66426 1.13822 1.08246 1.17382 0.77496 0.86097 0.82744 1.90758 1.51588 1.15710 1.85228 1.21534 1.18786 0.94491 0.95216 1.23410 0.93337 0.96875 0.89101 1.45858 1.51652 1.11274 1.06618 0.69021 1.77066 1.23530 0.91807 1.18572 1.21624 0.97202 0.92567 0.90844 1.18648 0.99894 0.89280 0.90495 1.22274 0.99868 0.99381 0.95118 1.21946 0.95718 0.91103 1.01734 1.22647 0.98864 1.02646 0.93033 1.23134 0.96167 0.92040 0.97041 1.67823 1.10540 1.01544 1.36369 0.91065 0.94712 0.90408 0.91151 0.91249 0.99394 0.96330 0.95679 0.95329 0.76452 0.76719 0.83350 0.80435 0.80847 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.48 71.98 0.68 -3.58 16 2 C 0.13 4.85 2.88 44.99 0.13 4.98 16 3 H 0.03 1.58 7.58 -2.39 -0.02 1.56 16 4 C 0.14 5.25 5.36 86.38 0.46 5.71 16 5 N -0.61 -28.62 2.82 -726.92 -2.05 -30.67 16 6 C 0.18 9.14 9.01 127.77 1.15 10.29 16 7 C -0.24 -11.87 8.02 84.04 0.67 -11.19 16 8 H 0.09 3.75 7.84 -2.91 -0.02 3.73 16 9 C -0.05 -2.51 5.13 84.86 0.44 -2.08 16 10 N -0.94 -55.54 10.59 21.65 0.23 -55.31 16 11 Si 0.95 41.70 29.57 68.60 2.03 43.73 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.32 -15.03 7.11 99.48 0.71 -14.33 16 14 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 15 N -0.69 -27.23 4.48 -445.90 -2.00 -29.23 16 16 C 0.58 25.44 7.77 86.63 0.67 26.11 16 17 O -0.55 -27.68 13.35 -4.09 -0.05 -27.74 16 18 C -0.29 -11.19 6.31 -18.78 -0.12 -11.31 16 19 C 0.12 3.70 11.50 84.26 0.97 4.67 16 20 N -0.45 -11.63 7.20 -56.43 -0.41 -12.04 16 21 H 0.46 7.77 8.96 -213.54 -1.91 5.85 16 22 N -0.29 -9.35 12.53 -44.54 -0.56 -9.90 16 23 C 0.15 5.59 7.11 44.06 0.31 5.90 16 24 C 0.15 5.76 6.62 41.95 0.28 6.04 16 25 C -0.15 -3.99 9.75 22.58 0.22 -3.77 16 26 C -0.08 -1.63 10.17 22.44 0.23 -1.41 16 27 C -0.15 -3.30 10.11 22.41 0.23 -3.07 16 28 C 0.07 2.36 11.17 84.71 0.95 3.30 16 29 N -0.45 -18.51 7.08 -184.90 -1.31 -19.82 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 2.29 8.03 -2.39 -0.02 2.27 16 34 H 0.07 2.29 7.86 -2.39 -0.02 2.27 16 35 H -0.01 -0.72 7.42 -2.39 -0.02 -0.74 16 36 H 0.02 0.99 7.19 -2.39 -0.02 0.97 16 37 H 0.02 1.08 7.84 -2.38 -0.02 1.06 16 38 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 39 H 0.40 14.61 6.35 -92.71 -0.59 14.02 16 40 H 0.22 5.08 7.48 -2.91 -0.02 5.06 16 41 H 0.15 3.51 8.04 -2.91 -0.02 3.48 16 42 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 43 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 44 H 0.16 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -80.29 370.83 1.70 -78.60 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: -1.46 Total: 31.77 kcal Atomic # 6 Polarization: 23.33 SS G_CDS: 7.27 Total: 30.60 kcal Atomic # 7 Polarization: -150.88 SS G_CDS: -6.09 Total: -156.97 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -80.29 1.70 -78.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312413.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.667 kcal (2) G-P(sol) polarization free energy of solvation -80.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds