Wall clock time and date at job start Tue Mar 31 2020 15:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46698 * 2 1 4 4 C 1.53000 * 109.47199 * 119.99654 * 2 1 3 5 5 N 1.46497 * 109.46822 * 175.00026 * 4 2 1 6 6 C 1.46498 * 120.00310 * 270.00243 * 5 4 2 7 7 C 1.36938 * 120.00037 * 90.00162 * 5 4 2 8 8 H 1.08003 * 120.00376 * 23.64299 * 7 5 4 9 9 C 1.38814 * 120.00399 * 203.64293 * 7 5 4 10 10 N 1.31621 * 119.99362 * 11.26873 * 9 7 5 11 11 Si 1.86800 * 120.00206 * 191.26635 * 9 7 5 12 12 H 1.48495 * 109.46994 * 90.00398 * 11 9 7 13 13 H 1.48498 * 109.46892 * 210.00055 * 11 9 7 14 14 H 1.48493 * 109.46981 * 329.99882 * 11 9 7 15 15 N 1.46499 * 109.47123 * 240.00222 * 2 1 3 16 16 C 1.34779 * 120.00327 * 84.99500 * 15 2 1 17 17 O 1.21615 * 119.99697 * 359.97438 * 16 15 2 18 18 C 1.47317 * 120.00087 * 180.02562 * 16 15 2 19 19 C 1.37917 * 126.80070 * 0.13783 * 18 16 15 20 20 N 1.34202 * 107.88655 * 180.24885 * 19 18 16 21 21 H 0.97002 * 125.15706 * 179.79136 * 20 19 18 22 22 N 1.39772 * 109.67319 * 359.76633 * 20 19 18 23 23 C 1.31386 * 109.06612 * 359.97438 * 22 20 19 24 24 C 1.48244 * 126.50938 * 179.97438 * 23 22 20 25 25 C 1.39378 * 119.73682 * 335.03539 * 24 23 22 26 26 C 1.38383 * 119.06635 * 180.23010 * 25 24 23 27 27 C 1.38794 * 118.51237 * 359.52228 * 26 25 24 28 28 C 1.38244 * 119.37793 * 0.45293 * 27 26 25 29 29 N 1.31758 * 120.89754 * 359.79155 * 28 27 26 30 30 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47037 * 300.00017 * 1 2 3 32 32 H 1.08999 * 109.47484 * 60.00001 * 1 2 3 33 33 H 1.08999 * 109.47136 * 295.00211 * 4 2 1 34 34 H 1.08998 * 109.47233 * 55.00463 * 4 2 1 35 35 H 1.09001 * 109.47622 * 94.57972 * 6 5 4 36 36 H 1.09002 * 109.47365 * 214.58468 * 6 5 4 37 37 H 1.08998 * 109.47015 * 334.57987 * 6 5 4 38 38 H 0.97001 * 119.99654 * 180.02562 * 10 9 7 39 39 H 0.97003 * 119.99626 * 264.99902 * 15 2 1 40 40 H 1.07990 * 126.05586 * 359.97438 * 19 18 16 41 41 H 1.08008 * 120.46075 * 359.94408 * 25 24 23 42 42 H 1.07997 * 120.74026 * 179.72583 * 26 25 24 43 43 H 1.08006 * 120.30848 * 180.22065 * 27 26 25 44 44 H 1.07996 * 119.55745 * 179.76694 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9918 0.5612 7 6 4.2799 0.1650 1.7239 8 1 3.8836 0.8070 2.4968 9 6 5.5798 0.3448 1.2713 10 7 5.9916 -0.2792 0.1881 11 14 6.7444 1.4725 2.1995 12 1 7.4753 0.6903 3.2287 13 1 7.7165 2.0705 1.2494 14 1 5.9673 2.5529 2.8581 15 7 2.0184 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8573 1.1616 -2.4119 18 6 2.6375 -0.7128 -3.5602 19 6 3.0007 -2.0398 -3.6577 20 7 3.3940 -2.2678 -4.9203 21 1 3.7048 -3.1203 -5.2632 22 7 3.2871 -1.0906 -5.6663 23 6 2.8334 -0.1313 -4.8917 24 6 2.5751 1.2739 -5.2871 25 6 3.2635 1.8261 -6.3659 26 6 3.0151 3.1406 -6.7201 27 6 2.0780 3.8579 -5.9895 28 6 1.4312 3.2472 -4.9313 29 7 1.6899 1.9955 -4.6116 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.7517 -0.1582 2.1370 34 1 1.6055 -1.7197 1.2952 35 1 4.3541 -1.7638 -0.4800 36 1 5.0469 -2.2391 1.0892 37 1 3.4425 -2.8397 0.6061 38 1 6.9001 -0.1538 -0.1280 39 1 2.2491 -1.6317 -1.1526 40 1 2.9774 -2.7655 -2.8583 41 1 3.9841 1.2378 -6.9147 42 1 3.5364 3.5970 -7.5485 43 1 1.8590 4.8846 -6.2431 44 1 0.7043 3.8038 -4.3585 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754312414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:48 Heat of formation + Delta-G solvation = 112.860196 kcal Electronic energy + Delta-G solvation = -28504.436759 eV Core-core repulsion = 24652.937291 eV Total energy + Delta-G solvation = -3851.499468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.00228 -39.61148 -38.51169 -36.06675 -33.82868 -32.83586 -32.22489 -31.43503 -30.53231 -29.93476 -29.09986 -26.11726 -25.52666 -24.15660 -23.46616 -22.95158 -21.47886 -20.56994 -19.97480 -19.30876 -18.11368 -16.71561 -16.66215 -15.94944 -15.84232 -15.47418 -15.13286 -14.89792 -14.68435 -13.98083 -13.88784 -13.57900 -13.45760 -13.31285 -13.10293 -13.01942 -12.74632 -12.40255 -12.04719 -11.78018 -11.68482 -11.34576 -11.06431 -10.91339 -10.79333 -10.71136 -10.47876 -10.18147 -10.13142 -9.89304 -9.79499 -9.65565 -9.22363 -8.79752 -8.72028 -8.51393 -8.34758 -8.04686 -6.67924 -5.67933 -3.13160 0.89889 1.47959 1.79490 2.48032 2.69965 3.41822 3.48638 3.49839 3.95285 4.06527 4.20592 4.31158 4.55618 4.65972 4.92714 4.95811 5.10050 5.20435 5.33005 5.42692 5.55424 5.56585 5.68877 5.71463 5.83807 5.88468 6.02645 6.12944 6.15930 6.21048 6.23114 6.37291 6.43741 6.58275 6.61828 6.74491 6.81499 7.04696 7.14997 7.32536 7.46067 7.52328 7.68775 7.85363 8.27787 8.44168 8.45269 9.23901 9.28463 9.91080 10.39325 11.37305 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.010838 B = 0.004148 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.968720 B = 6749.171199 C = 7099.601127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.084 0.916 4 C 0.143 3.857 5 N -0.596 5.596 6 C 0.163 3.837 7 C -0.253 4.253 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.289 1.289 13 H -0.293 1.293 14 H -0.280 1.280 15 N -0.702 5.702 16 C 0.585 3.415 17 O -0.511 6.511 18 C -0.238 4.238 19 C 0.099 3.901 20 N -0.464 5.464 21 H 0.442 0.558 22 N -0.281 5.281 23 C 0.166 3.834 24 C 0.193 3.807 25 C -0.144 4.144 26 C -0.087 4.087 27 C -0.170 4.170 28 C 0.102 3.898 29 N -0.403 5.403 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.031 0.969 36 H 0.041 0.959 37 H -0.007 1.007 38 H 0.250 0.750 39 H 0.386 0.614 40 H 0.187 0.813 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 -2.495 -12.161 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.102 0.898 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.018 3.982 7 C -0.383 4.383 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.216 1.216 13 H -0.219 1.219 14 H -0.205 1.205 15 N -0.353 5.353 16 C 0.371 3.629 17 O -0.386 6.386 18 C -0.253 4.253 19 C -0.050 4.050 20 N -0.171 5.171 21 H 0.287 0.713 22 N -0.104 5.104 23 C -0.003 4.003 24 C 0.055 3.945 25 C -0.165 4.165 26 C -0.113 4.113 27 C -0.191 4.191 28 C -0.057 4.057 29 N -0.112 5.112 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.011 0.989 38 H 0.060 0.940 39 H 0.220 0.780 40 H 0.204 0.796 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.753 -2.336 -12.678 15.582 hybrid contribution 1.496 0.230 0.385 1.562 sum -7.257 -2.106 -12.292 14.429 Atomic orbital electron populations 1.22152 0.97168 1.00817 1.01585 1.21732 0.91412 0.99071 0.86201 0.89785 1.21195 0.85688 0.97100 0.94538 1.43849 0.99102 1.20790 1.68114 1.20831 0.94396 0.85068 0.97913 1.19167 0.94511 1.10542 1.14078 0.91478 1.25000 0.98912 0.99064 0.96300 1.70032 1.17027 1.45798 1.22017 0.86290 0.81027 0.80566 0.78876 1.21645 1.21904 1.20499 1.45586 1.67497 1.13095 1.09102 1.16968 0.77831 0.86465 0.81672 1.90814 1.49233 1.14439 1.84111 1.21509 1.15628 0.92725 0.95429 1.23034 0.96094 0.97507 0.88372 1.45811 1.52740 1.11034 1.07485 0.71346 1.77160 1.23518 0.91463 1.18243 1.21261 0.96605 0.91757 0.90664 1.18376 0.94441 0.89915 0.91788 1.22062 1.00714 0.96169 0.97586 1.21428 0.96839 0.93759 0.99263 1.22260 0.97989 1.01204 0.97616 1.22796 0.97887 0.90918 0.94145 1.67934 1.13327 1.06626 1.23329 0.93501 0.92462 0.92743 0.92499 0.94228 0.95052 0.94037 0.98885 0.94027 0.78031 0.79571 0.84680 0.84867 0.84962 0.82646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.48 37.16 0.35 -2.12 16 2 C 0.12 2.37 2.88 -67.93 -0.20 2.17 16 3 H 0.08 1.97 7.58 -51.93 -0.39 1.57 16 4 C 0.14 2.78 5.33 -4.04 -0.02 2.76 16 5 N -0.60 -14.29 2.78 -181.12 -0.50 -14.79 16 6 C 0.16 3.70 7.60 59.85 0.46 4.15 16 7 C -0.25 -6.91 9.66 -15.06 -0.15 -7.05 16 8 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -26.19 10.66 55.49 0.59 -25.60 16 11 Si 0.90 22.37 29.57 -169.99 -5.03 17.34 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 N -0.70 -13.15 4.40 -54.91 -0.24 -13.39 16 16 C 0.59 12.05 7.77 -12.57 -0.10 11.95 16 17 O -0.51 -11.96 13.34 5.26 0.07 -11.89 16 18 C -0.24 -4.28 6.31 -102.95 -0.65 -4.93 16 19 C 0.10 1.33 11.50 -16.63 -0.19 1.14 16 20 N -0.46 -5.60 7.20 30.81 0.22 -5.38 16 21 H 0.44 3.42 8.96 -182.84 -1.64 1.78 16 22 N -0.28 -4.33 12.53 34.57 0.43 -3.89 16 23 C 0.17 2.95 7.11 -80.57 -0.57 2.38 16 24 C 0.19 3.40 6.62 -82.96 -0.55 2.85 16 25 C -0.14 -2.06 9.75 -39.10 -0.38 -2.44 16 26 C -0.09 -1.03 10.17 -39.32 -0.40 -1.43 16 27 C -0.17 -2.00 10.11 -39.37 -0.40 -2.40 16 28 C 0.10 1.49 11.17 -17.58 -0.20 1.29 16 29 N -0.40 -7.41 7.08 -9.79 -0.07 -7.48 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 34 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 35 H 0.03 0.76 6.90 -51.93 -0.36 0.40 16 36 H 0.04 1.05 7.30 -51.93 -0.38 0.67 16 37 H -0.01 -0.14 7.84 -51.93 -0.41 -0.55 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.39 6.46 6.13 -40.82 -0.25 6.21 16 40 H 0.19 1.86 7.48 -52.49 -0.39 1.47 16 41 H 0.14 1.73 8.04 -52.48 -0.42 1.31 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 44 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -36.04 370.37 -9.17 -45.21 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.15 Total: 5.89 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -3.08 Total: 8.40 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: 0.43 Total: -70.53 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.04 -9.17 -45.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754312414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.072 kcal (2) G-P(sol) polarization free energy of solvation -36.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds