Wall clock time and date at job start Tue Mar 31 2020 15:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47330 * 2 1 4 4 C 1.53002 * 109.47338 * 239.99675 * 2 1 3 5 5 N 1.46496 * 109.47396 * 184.99922 * 4 2 1 6 6 C 1.46500 * 120.00283 * 270.00322 * 5 4 2 7 7 C 1.36944 * 119.99842 * 90.00041 * 5 4 2 8 8 H 1.07997 * 119.99562 * 22.34218 * 7 5 4 9 9 C 1.38812 * 119.99829 * 202.34346 * 7 5 4 10 10 N 1.31614 * 120.00069 * 11.35607 * 9 7 5 11 11 Si 1.86805 * 119.99576 * 191.35340 * 9 7 5 12 12 H 1.48503 * 109.46682 * 90.00274 * 11 9 7 13 13 H 1.48504 * 109.46838 * 209.99878 * 11 9 7 14 14 H 1.48489 * 109.47167 * 330.00177 * 11 9 7 15 15 N 1.46501 * 109.47276 * 119.99675 * 2 1 3 16 16 C 1.34770 * 120.00195 * 275.00398 * 15 2 1 17 17 O 1.21593 * 120.00038 * 359.97438 * 16 15 2 18 18 C 1.47514 * 120.00292 * 179.97438 * 16 15 2 19 19 C 1.36622 * 125.77096 * 180.27969 * 18 16 15 20 20 N 1.35070 * 106.79281 * 180.15547 * 19 18 16 21 21 C 1.40233 * 126.61164 * 179.85283 * 20 19 18 22 22 C 1.38825 * 120.06433 * 179.71383 * 21 20 19 23 23 C 1.38126 * 119.93044 * 179.97438 * 22 21 20 24 24 C 1.38275 * 120.06778 * 359.97359 * 23 22 21 25 25 C 1.38285 * 120.13052 * 0.02562 * 24 23 22 26 26 C 1.38120 * 120.06437 * 0.02562 * 25 24 23 27 27 N 1.40215 * 106.77826 * 359.59114 * 20 19 18 28 28 N 1.28757 * 108.38441 * 0.26164 * 27 20 19 29 29 H 1.08996 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46986 * 300.00253 * 1 2 3 31 31 H 1.09005 * 109.46717 * 60.00240 * 1 2 3 32 32 H 1.08997 * 109.47102 * 305.00573 * 4 2 1 33 33 H 1.08998 * 109.46878 * 65.00041 * 4 2 1 34 34 H 1.08998 * 109.47104 * 94.22214 * 6 5 4 35 35 H 1.08998 * 109.47039 * 214.22153 * 6 5 4 36 36 H 1.08996 * 109.46787 * 334.22398 * 6 5 4 37 37 H 0.97000 * 120.00001 * 179.97438 * 10 9 7 38 38 H 0.97009 * 119.99829 * 94.99337 * 15 2 1 39 39 H 1.08000 * 126.59898 * 0.02562 * 19 18 16 40 40 H 1.07993 * 120.03838 * 359.95093 * 22 21 20 41 41 H 1.07998 * 119.96411 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.93548 * 179.74456 * 24 23 22 43 43 H 1.07998 * 119.96468 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.03161 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0850 -1.9159 -0.6022 8 1 3.5338 -2.8399 -0.5086 9 6 5.3862 -1.8326 -0.1261 10 7 5.9794 -0.6613 -0.0337 11 14 6.2954 -3.3829 0.3833 12 1 7.0229 -3.9371 -0.7867 13 1 7.2649 -3.0570 1.4600 14 1 5.3214 -4.3869 0.8814 15 7 2.0183 -0.6905 1.1962 16 6 2.1470 -0.0182 2.3571 17 8 1.8582 1.1617 2.4116 18 6 2.6382 -0.7136 3.5617 19 6 2.8081 -0.1511 4.7951 20 7 3.2748 -1.1245 5.6070 21 6 3.5953 -0.9976 6.9663 22 6 4.0618 -2.0956 7.6763 23 6 4.3772 -1.9673 9.0150 24 6 4.2293 -0.7468 9.6477 25 6 3.7649 0.3487 8.9430 26 6 3.4469 0.2263 7.6045 27 7 3.3712 -2.2878 4.8302 28 7 2.9888 -2.0094 3.6327 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1369 34 1 4.6022 0.9455 -0.9802 35 1 5.2404 -0.2029 -2.1810 36 1 3.7811 0.7483 -2.5470 37 1 6.8886 -0.6030 0.2993 38 1 2.2490 -1.6318 1.1527 39 1 2.6097 0.8749 5.0678 40 1 4.1776 -3.0491 7.1827 41 1 4.7397 -2.8212 9.5679 42 1 4.4726 -0.6499 10.6955 43 1 3.6500 1.3006 9.4400 44 1 3.0846 1.0823 7.0546 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754314343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:59 Heat of formation + Delta-G solvation = 119.588433 kcal Electronic energy + Delta-G solvation = -27913.792148 eV Core-core repulsion = 24062.584439 eV Total energy + Delta-G solvation = -3851.207709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26847 -39.55387 -38.81034 -36.23600 -34.68862 -33.90948 -31.70173 -31.36518 -30.74444 -30.20797 -29.34532 -26.11899 -25.53147 -24.53523 -24.08197 -22.63873 -21.60631 -21.42225 -20.24129 -19.64232 -18.70918 -17.02172 -16.57639 -16.07558 -16.02695 -15.67416 -15.29728 -14.99614 -14.77654 -14.24834 -14.23647 -13.85585 -13.64552 -13.57652 -13.27123 -12.94207 -12.79312 -12.29202 -12.17537 -12.05255 -11.85129 -11.46684 -11.35469 -11.24224 -11.20787 -11.09451 -10.77943 -10.60737 -10.35115 -10.20379 -9.95733 -9.74921 -9.50071 -9.44578 -9.39252 -8.68042 -8.48430 -8.22242 -6.71015 -5.66497 -3.12217 0.32577 0.90676 1.67995 1.97295 2.04439 3.36642 3.44132 3.51500 3.52999 3.69581 3.91722 4.23238 4.33984 4.48322 4.56627 4.67165 4.77257 4.91979 4.96503 5.13796 5.23555 5.30149 5.42014 5.57297 5.58307 5.70244 5.82750 5.90699 5.96479 6.03042 6.04651 6.14043 6.22144 6.25914 6.30078 6.50557 6.55436 6.69183 6.79773 6.93069 7.28105 7.44488 7.79249 7.86647 8.00288 8.36363 8.44276 8.89142 9.28770 9.92249 10.40970 11.37900 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012870 B = 0.003744 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.134737 B = 7476.305918 C = 8878.615153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.117 3.883 3 H 0.079 0.921 4 C 0.141 3.859 5 N -0.599 5.599 6 C 0.164 3.836 7 C -0.255 4.255 8 H 0.068 0.932 9 C 0.012 3.988 10 N -0.901 5.901 11 Si 0.895 3.105 12 H -0.290 1.290 13 H -0.294 1.294 14 H -0.275 1.275 15 N -0.667 5.667 16 C 0.604 3.396 17 O -0.560 6.560 18 C -0.072 4.072 19 C 0.083 3.917 20 N -0.320 5.320 21 C 0.144 3.856 22 C -0.108 4.108 23 C -0.098 4.098 24 C -0.121 4.121 25 C -0.096 4.096 26 C -0.128 4.128 27 N -0.063 5.063 28 N -0.180 5.180 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.027 0.973 35 H 0.044 0.956 36 H -0.005 1.005 37 H 0.250 0.750 38 H 0.413 0.587 39 H 0.204 0.796 40 H 0.142 0.858 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 1.524 16.440 18.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.097 0.903 4 C 0.013 3.987 5 N -0.321 5.321 6 C 0.020 3.980 7 C -0.385 4.385 8 H 0.086 0.914 9 C -0.187 4.187 10 N -0.546 5.546 11 Si 0.725 3.275 12 H -0.217 1.217 13 H -0.221 1.221 14 H -0.200 1.200 15 N -0.315 5.315 16 C 0.387 3.613 17 O -0.439 6.439 18 C -0.210 4.210 19 C -0.070 4.070 20 N -0.099 5.099 21 C 0.052 3.948 22 C -0.128 4.128 23 C -0.117 4.117 24 C -0.140 4.140 25 C -0.115 4.115 26 C -0.149 4.149 27 N -0.041 5.041 28 N -0.054 5.054 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.014 0.986 37 H 0.060 0.940 38 H 0.250 0.750 39 H 0.221 0.779 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.952 0.891 16.370 17.807 hybrid contribution 0.718 -0.115 0.511 0.888 sum -6.234 0.776 16.881 18.012 Atomic orbital electron populations 1.22163 0.96712 1.01414 1.01598 1.21925 0.91914 0.98449 0.86774 0.90308 1.21202 0.86059 0.97988 0.93454 1.43913 0.98862 1.22670 1.66628 1.20794 0.92976 0.90463 0.93792 1.19088 0.97115 0.89447 1.32806 0.91436 1.24932 0.98651 0.96069 0.99032 1.70073 1.13250 1.21607 1.49647 0.86380 0.79985 0.83376 0.77721 1.21683 1.22058 1.19968 1.45552 1.63251 1.14859 1.07833 1.16595 0.77517 0.85427 0.81804 1.90727 1.53149 1.14858 1.85149 1.21691 1.12166 0.91182 0.95956 1.23284 0.97205 0.96475 0.90039 1.47649 1.44269 1.09664 1.08311 1.17655 1.01857 0.95930 0.79347 1.21019 0.98936 0.98266 0.94552 1.21111 0.98777 0.98205 0.93586 1.21317 0.99339 0.92823 1.00491 1.21024 0.98037 0.99423 0.92970 1.20997 1.02475 0.95587 0.95848 1.82063 1.22239 1.03600 0.96228 1.74735 1.06795 1.13465 1.10413 0.92898 0.92903 0.92115 0.93225 0.92818 0.95449 0.93698 0.98608 0.93978 0.75021 0.77907 0.84030 0.84726 0.85174 0.84664 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.24 2.88 -67.93 -0.20 2.05 16 3 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 4 C 0.14 2.79 5.36 -4.04 -0.02 2.77 16 5 N -0.60 -14.65 2.82 -181.12 -0.51 -15.16 16 6 C 0.16 4.08 9.01 59.85 0.54 4.62 16 7 C -0.26 -6.78 8.02 -15.06 -0.12 -6.90 16 8 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 9 C 0.01 0.34 5.13 -17.43 -0.09 0.25 16 10 N -0.90 -26.49 10.58 55.49 0.59 -25.91 16 11 Si 0.90 22.56 29.57 -169.99 -5.03 17.53 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 14 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 15 N -0.67 -13.80 4.48 -54.86 -0.25 -14.05 16 16 C 0.60 12.68 7.78 -12.48 -0.10 12.58 16 17 O -0.56 -12.44 16.53 5.28 0.09 -12.35 16 18 C -0.07 -1.40 6.99 -83.54 -0.58 -1.98 16 19 C 0.08 1.30 10.60 -16.71 -0.18 1.12 16 20 N -0.32 -4.93 3.82 -10.42 -0.04 -4.97 16 21 C 0.14 1.77 6.70 -83.58 -0.56 1.21 16 22 C -0.11 -1.17 9.68 -39.41 -0.38 -1.55 16 23 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 24 C -0.12 -0.84 10.04 -39.55 -0.40 -1.24 16 25 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 26 C -0.13 -1.22 9.47 -39.41 -0.37 -1.59 16 27 N -0.06 -1.15 13.12 60.35 0.79 -0.36 16 28 N -0.18 -3.65 12.03 32.85 0.40 -3.26 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.93 8.03 -51.93 -0.42 0.52 16 33 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 34 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 35 H 0.04 1.20 7.19 -51.93 -0.37 0.82 16 36 H 0.00 -0.10 7.84 -51.93 -0.41 -0.51 16 37 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.41 8.86 7.08 -40.82 -0.29 8.57 16 39 H 0.20 2.46 7.13 -52.49 -0.37 2.08 16 40 H 0.14 1.60 7.73 -52.49 -0.41 1.19 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.14 1.07 6.81 -52.49 -0.36 0.71 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -33.58 374.93 -7.11 -40.69 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.89 Total: 5.23 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -2.90 Total: 6.95 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.98 Total: -63.70 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.35 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.58 -7.11 -40.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754314343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.279 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds