Wall clock time and date at job start Tue Mar 31 2020 15:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52999 * 109.46873 * 119.99847 * 2 1 3 5 5 N 1.46500 * 109.46825 * 175.00403 * 4 2 1 6 6 C 1.46499 * 119.99853 * 269.99439 * 5 4 2 7 7 C 1.36940 * 120.00241 * 90.00250 * 5 4 2 8 8 H 1.07997 * 119.99706 * 23.62040 * 7 5 4 9 9 C 1.38817 * 119.99765 * 203.62604 * 7 5 4 10 10 N 1.31615 * 119.99846 * 11.29195 * 9 7 5 11 11 Si 1.86798 * 119.99725 * 191.29527 * 9 7 5 12 12 H 1.48498 * 109.47137 * 59.99601 * 11 9 7 13 13 H 1.48493 * 109.47022 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47067 * 299.99703 * 11 9 7 15 15 N 1.46495 * 109.47026 * 239.99986 * 2 1 3 16 16 C 1.34771 * 120.00257 * 85.00512 * 15 2 1 17 17 O 1.21597 * 120.00155 * 359.71633 * 16 15 2 18 18 C 1.47510 * 120.00305 * 179.97438 * 16 15 2 19 19 C 1.36617 * 125.76977 * 179.71413 * 18 16 15 20 20 N 1.35080 * 106.79599 * 179.89539 * 19 18 16 21 21 C 1.40227 * 126.61197 * 180.12751 * 20 19 18 22 22 C 1.38824 * 120.06700 * 359.97316 * 21 20 19 23 23 C 1.38127 * 119.93369 * 179.69637 * 22 21 20 24 24 C 1.38283 * 120.06346 * 0.57509 * 23 22 21 25 25 C 1.38281 * 120.12870 * 359.72351 * 24 23 22 26 26 C 1.38115 * 120.06870 * 359.97438 * 25 24 23 27 27 N 1.40216 * 106.77244 * 0.35655 * 20 19 18 28 28 N 1.28755 * 108.38371 * 359.77045 * 27 20 19 29 29 H 1.08999 * 109.47532 * 299.99861 * 1 2 3 30 30 H 1.09004 * 109.47107 * 60.00292 * 1 2 3 31 31 H 1.09002 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46982 * 294.99916 * 4 2 1 33 33 H 1.08998 * 109.47698 * 55.00302 * 4 2 1 34 34 H 1.09011 * 109.46979 * 94.55383 * 6 5 4 35 35 H 1.09003 * 109.47244 * 214.55032 * 6 5 4 36 36 H 1.09000 * 109.47261 * 334.55761 * 6 5 4 37 37 H 0.97006 * 119.99594 * 179.97438 * 10 9 7 38 38 H 0.97003 * 120.00012 * 264.99626 * 15 2 1 39 39 H 1.08008 * 126.60160 * 0.03230 * 19 18 16 40 40 H 1.07997 * 120.03428 * 0.02562 * 22 21 20 41 41 H 1.08001 * 119.96922 * 180.31911 * 23 22 21 42 42 H 1.07999 * 119.93475 * 179.74024 * 24 23 22 43 43 H 1.08006 * 119.96510 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.03405 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5614 7 6 4.2798 0.1650 1.7241 8 1 3.8833 0.8070 2.4967 9 6 5.5799 0.3445 1.2718 10 7 5.9918 -0.2793 0.1885 11 14 6.7447 1.4714 2.2006 12 1 6.9135 0.9729 3.5892 13 1 8.0631 1.4919 1.5177 14 1 6.1831 2.8458 2.2330 15 7 2.0183 -0.6906 -1.1961 16 6 2.1472 -0.0183 -2.3571 17 8 1.8532 1.1603 -2.4130 18 6 2.6394 -0.7135 -3.5613 19 6 2.8094 -0.1511 -4.7947 20 7 3.2761 -1.1245 -5.6067 21 6 3.5963 -0.9977 -6.9660 22 6 3.4414 0.2245 -7.6059 23 6 3.7636 0.3479 -8.9434 24 6 4.2288 -0.7474 -9.6478 25 6 4.3783 -1.9675 -9.0145 26 6 4.0636 -2.0955 -7.6758 27 7 3.3735 -2.2875 -4.8295 28 7 2.9910 -2.0090 -3.6321 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -0.1582 2.1370 33 1 1.6054 -1.7198 1.2953 34 1 4.3536 -1.7640 -0.4800 35 1 5.0471 -2.2388 1.0891 36 1 3.4425 -2.8399 0.6067 37 1 6.9001 -0.1536 -0.1278 38 1 2.2491 -1.6318 -1.1526 39 1 2.6112 0.8750 -5.0674 40 1 3.0743 1.0792 -7.0573 41 1 3.6482 1.2997 -9.4406 42 1 4.4762 -0.6496 -10.6945 43 1 4.7415 -2.8213 -9.5673 44 1 4.1810 -3.0486 -7.1816 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754314344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:02 Heat of formation + Delta-G solvation = 119.722749 kcal Electronic energy + Delta-G solvation = -27636.689590 eV Core-core repulsion = 23785.487705 eV Total energy + Delta-G solvation = -3851.201885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35873 -39.60917 -38.89814 -36.26755 -34.76283 -33.94581 -31.75552 -31.35159 -30.79406 -30.29804 -29.45579 -26.08124 -25.55367 -24.60168 -24.15309 -22.70363 -21.63346 -21.42397 -20.27534 -19.82028 -18.74789 -16.99548 -16.72513 -16.16402 -16.11932 -15.66782 -15.34500 -15.03813 -14.77455 -14.32859 -14.30214 -13.90028 -13.67368 -13.63604 -13.25827 -13.10527 -12.78977 -12.36842 -12.15386 -12.06232 -11.90913 -11.52765 -11.37863 -11.29940 -11.23785 -11.00733 -10.77635 -10.73052 -10.48323 -10.12784 -9.92945 -9.79521 -9.57647 -9.48742 -9.46861 -8.74728 -8.52690 -8.30256 -6.66933 -5.64987 -3.12027 0.26591 0.86632 1.61422 1.89096 1.93749 3.32208 3.43751 3.48577 3.49215 3.60518 3.81650 4.16437 4.26959 4.42994 4.56151 4.62857 4.71293 4.86901 4.90159 5.06049 5.17082 5.24565 5.40773 5.53303 5.56094 5.71035 5.79001 5.86820 5.92479 5.99577 6.05089 6.07926 6.17545 6.20527 6.30650 6.53041 6.59286 6.62801 6.77239 6.93233 7.19597 7.42879 7.80694 7.87569 7.88791 8.20760 8.46370 8.77069 9.29934 9.92740 10.41485 11.39306 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.003131 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.623251 B = 8941.902412 C = 9890.574821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.088 0.912 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.161 3.839 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.005 3.995 10 N -0.902 5.902 11 Si 0.903 3.097 12 H -0.285 1.285 13 H -0.292 1.292 14 H -0.283 1.283 15 N -0.678 5.678 16 C 0.605 3.395 17 O -0.550 6.550 18 C -0.075 4.075 19 C 0.086 3.914 20 N -0.318 5.318 21 C 0.142 3.858 22 C -0.127 4.127 23 C -0.096 4.096 24 C -0.120 4.120 25 C -0.098 4.098 26 C -0.107 4.107 27 N -0.060 5.060 28 N -0.187 5.187 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.035 0.965 35 H 0.041 0.959 36 H -0.005 1.005 37 H 0.251 0.749 38 H 0.404 0.596 39 H 0.205 0.795 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.135 0.865 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 -2.365 -18.769 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.009 3.991 3 H 0.106 0.894 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.016 3.984 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.210 1.210 15 N -0.326 5.326 16 C 0.388 3.612 17 O -0.428 6.428 18 C -0.212 4.212 19 C -0.067 4.067 20 N -0.097 5.097 21 C 0.050 3.950 22 C -0.148 4.148 23 C -0.114 4.114 24 C -0.139 4.139 25 C -0.117 4.117 26 C -0.127 4.127 27 N -0.039 5.039 28 N -0.061 5.061 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.014 0.986 37 H 0.061 0.939 38 H 0.239 0.761 39 H 0.222 0.778 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.153 0.847 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.210 -3.037 -18.741 20.309 hybrid contribution 0.798 1.319 0.259 1.563 sum -6.413 -1.718 -18.482 19.639 Atomic orbital electron populations 1.22160 0.96712 1.01236 1.01731 1.21965 0.91773 0.99221 0.86157 0.89412 1.21206 0.85912 0.97299 0.94182 1.43896 0.99010 1.20914 1.68134 1.20864 0.94481 0.85000 0.98040 1.19116 0.94602 1.10646 1.14255 0.91511 1.25033 0.98910 0.99064 0.96332 1.70055 1.17147 1.45492 1.21966 0.86367 0.80369 0.80781 0.79178 1.21146 1.21790 1.20983 1.45593 1.64314 1.14176 1.08534 1.16577 0.77470 0.85462 0.81653 1.90752 1.52287 1.14830 1.84910 1.21680 1.12369 0.91180 0.96019 1.23309 0.96894 0.96527 0.89982 1.47620 1.44151 1.09578 1.08345 1.17650 1.02054 0.95998 0.79260 1.21006 1.02342 0.95624 0.95860 1.21035 0.97977 0.99444 0.92979 1.21332 0.99201 0.92812 1.00519 1.21115 0.98770 0.98225 0.93580 1.21008 0.98940 0.98194 0.94547 1.82032 1.22108 1.03647 0.96126 1.74669 1.07199 1.13434 1.10757 0.91954 0.92924 0.93087 0.92168 0.93915 0.94703 0.93985 0.98603 0.93915 0.76077 0.77840 0.84667 0.84631 0.85137 0.84681 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.10 16 2 C 0.12 2.24 2.88 -67.93 -0.20 2.05 16 3 H 0.09 2.00 7.58 -51.93 -0.39 1.60 16 4 C 0.14 2.84 5.33 -4.04 -0.02 2.82 16 5 N -0.60 -14.83 2.78 -181.11 -0.50 -15.34 16 6 C 0.16 3.96 7.61 59.85 0.46 4.41 16 7 C -0.26 -7.08 9.66 -15.06 -0.15 -7.23 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.01 0.15 5.13 -17.43 -0.09 0.06 16 10 N -0.90 -26.77 10.66 55.49 0.59 -26.18 16 11 Si 0.90 22.43 29.57 -169.99 -5.03 17.41 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 15 N -0.68 -13.42 4.41 -54.86 -0.24 -13.66 16 16 C 0.61 12.31 7.78 -12.48 -0.10 12.21 16 17 O -0.55 -12.16 16.53 5.28 0.09 -12.07 16 18 C -0.07 -1.36 6.99 -83.54 -0.58 -1.94 16 19 C 0.09 1.27 10.60 -16.71 -0.18 1.10 16 20 N -0.32 -4.56 3.82 -10.42 -0.04 -4.60 16 21 C 0.14 1.62 6.70 -83.58 -0.56 1.06 16 22 C -0.13 -1.13 9.47 -39.41 -0.37 -1.51 16 23 C -0.10 -0.65 10.04 -39.61 -0.40 -1.05 16 24 C -0.12 -0.76 10.04 -39.55 -0.40 -1.16 16 25 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 26 C -0.11 -1.06 9.68 -39.41 -0.38 -1.44 16 27 N -0.06 -1.01 13.12 60.35 0.79 -0.22 16 28 N -0.19 -3.44 12.03 32.85 0.40 -3.05 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.15 8.03 -51.93 -0.42 0.73 16 33 H 0.04 0.76 7.86 -51.93 -0.41 0.35 16 34 H 0.03 0.93 6.90 -51.92 -0.36 0.57 16 35 H 0.04 1.12 7.30 -51.93 -0.38 0.75 16 36 H 0.00 -0.10 7.84 -51.93 -0.41 -0.50 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 38 H 0.40 7.86 6.86 -40.82 -0.28 7.58 16 39 H 0.20 2.35 7.13 -52.48 -0.37 1.98 16 40 H 0.14 1.00 6.81 -52.49 -0.36 0.65 16 41 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 44 H 0.14 1.43 7.73 -52.49 -0.41 1.03 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -34.09 374.47 -7.18 -41.27 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.86 Total: 4.63 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -3.01 Total: 6.17 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: 0.99 Total: -63.04 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.09 -7.18 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754314344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.993 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds