Wall clock time and date at job start Tue Mar 31 2020 15:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50710 * 109.47067 * 2 1 4 4 C 1.38287 * 119.96986 * 270.29679 * 3 2 1 5 5 C 1.38247 * 120.10407 * 180.25172 * 4 3 2 6 6 C 1.38159 * 120.06070 * 359.45669 * 5 4 3 7 7 C 1.38711 * 119.93959 * 0.26885 * 6 5 4 8 8 O 1.35905 * 120.05478 * 179.97438 * 7 6 5 9 9 C 1.42907 * 116.99756 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.46962 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.47299 * 64.99908 * 10 9 8 12 12 C 1.46903 * 111.00090 * 189.99922 * 11 10 9 13 13 C 1.50696 * 109.47012 * 75.73440 * 12 11 10 14 14 H 1.08003 * 120.00141 * 5.05905 * 13 12 11 15 15 C 1.37878 * 120.00092 * 185.05969 * 13 12 11 16 16 N 1.31513 * 119.99522 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47479 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47119 * 120.00210 * 17 15 13 20 20 H 1.48511 * 109.46813 * 239.99692 * 17 15 13 21 21 C 1.46902 * 111.00120 * 66.04385 * 11 10 9 22 22 C 1.50696 * 109.47206 * 195.89475 * 21 11 10 23 23 C 1.34517 * 125.78957 * 89.71988 * 22 21 11 24 24 C 1.41384 * 106.83994 * 179.88682 * 23 22 21 25 25 C 1.34519 * 106.84032 * 0.37390 * 24 23 22 26 26 O 1.34302 * 108.42001 * 359.76742 * 25 24 23 27 27 C 1.38122 * 119.97196 * 90.00125 * 3 2 1 28 28 H 1.09003 * 109.47168 * 59.99407 * 1 2 3 29 29 H 1.08997 * 109.47467 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47073 * 300.00323 * 1 2 3 31 31 H 1.08998 * 109.47020 * 240.00519 * 2 1 3 32 32 H 1.08997 * 109.47568 * 119.99992 * 2 1 3 33 33 H 1.07997 * 119.94802 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.96844 * 179.72100 * 5 4 3 35 35 H 1.08004 * 120.03093 * 180.25016 * 6 5 4 36 36 H 1.09007 * 109.46861 * 299.99866 * 9 8 7 37 37 H 1.08992 * 109.47170 * 59.99843 * 9 8 7 38 38 H 1.08999 * 109.47023 * 184.99697 * 10 9 8 39 39 H 1.08996 * 109.46915 * 304.99931 * 10 9 8 40 40 H 1.09004 * 109.46895 * 195.73514 * 12 11 10 41 41 H 1.08994 * 109.47074 * 315.73467 * 12 11 10 42 42 H 0.97007 * 119.99394 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.47085 * 315.89607 * 21 11 10 44 44 H 1.09006 * 109.47165 * 75.89395 * 21 11 10 45 45 H 1.07997 * 126.57970 * 0.02562 * 23 22 21 46 46 H 1.08001 * 126.57831 * 180.15585 * 24 23 22 47 47 H 1.08001 * 125.78671 * 179.74910 * 25 24 23 48 48 H 1.08002 * 120.02599 * 0.04491 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2567 2.0743 -1.1980 5 6 2.7225 3.3759 -1.2012 6 6 2.9542 4.0311 -0.0071 7 6 2.7244 3.3797 1.1958 8 8 2.9521 4.0217 2.3718 9 6 3.4284 5.3669 2.2949 10 6 3.6252 5.9197 3.7079 11 7 4.6911 5.1680 4.3838 12 6 4.7495 5.5063 5.8122 13 6 3.6127 4.8313 6.5351 14 1 2.9652 4.1484 6.0051 15 6 3.3990 5.0854 7.8734 16 7 4.1877 5.9165 8.5189 17 14 1.9902 4.2480 8.7697 18 1 1.2574 3.3663 7.8259 19 1 2.5293 3.4355 9.8897 20 1 1.0634 5.2771 9.3060 21 6 5.9892 5.3966 3.7351 22 6 6.9672 4.3412 4.1829 23 6 7.1696 3.1525 3.5866 24 6 8.1691 2.4854 4.3316 25 6 8.5117 3.3029 5.3434 26 8 7.7806 4.4254 5.2483 27 6 2.2623 2.0715 1.1965 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0713 1.5657 -2.1324 34 1 2.9013 3.8826 -2.1381 35 1 3.3142 5.0493 -0.0102 36 1 4.3792 5.3857 1.7621 37 1 2.7013 5.9799 1.7625 38 1 3.9029 6.9722 3.6509 39 1 2.6969 5.8188 4.2701 40 1 5.6979 5.1655 6.2277 41 1 4.6669 6.5863 5.9334 42 1 4.0371 6.0956 9.4603 43 1 5.8688 5.3447 2.6531 44 1 6.3654 6.3815 4.0120 45 1 6.6669 2.7802 2.7062 46 1 8.5764 1.5058 4.1294 47 1 9.2494 3.0920 6.1036 48 1 2.0830 1.5621 2.1318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078666756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:41 Heat of formation + Delta-G solvation = 3.031564 kcal Electronic energy + Delta-G solvation = -27948.251768 eV Core-core repulsion = 24163.237366 eV Total energy + Delta-G solvation = -3785.014402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.99933 -40.03087 -37.96612 -36.54073 -33.84326 -32.70264 -32.39643 -31.05615 -30.06849 -29.15940 -28.71705 -26.71836 -24.77471 -23.96674 -22.51524 -22.40843 -21.28216 -20.94638 -20.31887 -19.48519 -17.70076 -16.87034 -16.46995 -16.01633 -15.90567 -15.82310 -15.46335 -14.71759 -14.61946 -14.37981 -14.16922 -13.92482 -13.59051 -13.52681 -13.10505 -12.93303 -12.70249 -12.30899 -12.28213 -12.20487 -12.01950 -11.89328 -11.84771 -11.51111 -11.35177 -11.24430 -11.06408 -10.95026 -10.71009 -10.64099 -10.45619 -10.25948 -9.82928 -9.40895 -9.18838 -8.76692 -8.39141 -8.01791 -7.95472 -7.35127 -5.98097 -3.98629 1.36173 1.55435 2.26173 3.11399 3.33859 3.41402 3.47290 3.48004 3.54656 3.81551 4.46344 4.68452 4.79681 4.83561 4.98436 5.11846 5.15092 5.22746 5.24652 5.30339 5.36002 5.38826 5.45028 5.47047 5.49620 5.52895 5.59212 5.62879 5.76560 5.79028 5.84513 5.88485 6.02481 6.08339 6.13814 6.27146 6.40241 6.41012 6.45720 6.51926 6.60079 6.63998 6.86976 6.99733 7.18941 7.28242 7.69757 7.71514 7.84655 8.06905 8.13182 8.51976 9.10820 9.65267 11.12421 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.008687 B = 0.003763 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.565615 B = 7439.008756 C = 8949.336673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.045 4.045 4 C -0.168 4.168 5 C -0.079 4.079 6 C -0.221 4.221 7 C 0.145 3.855 8 O -0.284 6.284 9 C 0.063 3.937 10 C 0.063 3.937 11 N -0.523 5.523 12 C 0.190 3.810 13 C -0.500 4.500 14 H 0.066 0.934 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.285 1.285 21 C 0.125 3.875 22 C 0.021 3.979 23 C -0.205 4.205 24 C -0.218 4.218 25 C -0.048 4.048 26 O -0.169 6.169 27 C -0.152 4.152 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.100 0.900 40 H 0.035 0.965 41 H -0.002 1.002 42 H 0.259 0.741 43 H 0.088 0.912 44 H 0.042 0.958 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.195 0.805 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.203 -5.659 -18.656 19.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.045 4.045 4 C -0.186 4.186 5 C -0.097 4.097 6 C -0.240 4.240 7 C 0.098 3.902 8 O -0.196 6.196 9 C -0.012 4.012 10 C -0.065 4.065 11 N -0.248 5.248 12 C 0.065 3.935 13 C -0.539 4.539 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.003 4.003 22 C -0.030 4.030 23 C -0.225 4.225 24 C -0.238 4.238 25 C -0.116 4.116 26 O -0.064 6.064 27 C -0.171 4.171 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.118 0.882 40 H 0.053 0.947 41 H 0.016 0.984 42 H 0.069 0.931 43 H 0.106 0.894 44 H 0.060 0.940 45 H 0.158 0.842 46 H 0.158 0.842 47 H 0.212 0.788 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.097 -5.876 -18.099 19.029 hybrid contribution -0.333 0.376 0.504 0.711 sum -0.235 -5.500 -17.595 18.436 Atomic orbital electron populations 1.21744 0.94664 1.01620 1.02360 1.20551 0.96231 0.92540 1.02916 1.19644 0.96771 0.95750 0.92332 1.20815 1.05036 0.95505 0.97265 1.20849 0.97163 0.94522 0.97189 1.21241 1.09165 1.01252 0.92371 1.19157 0.93517 0.92209 0.85330 1.86345 1.79457 1.27466 1.26367 1.23055 0.97805 0.81068 0.99292 1.22056 0.98377 0.93911 0.92179 1.62151 1.00289 1.56635 1.05753 1.19852 0.98562 0.94764 0.80275 1.21201 1.13017 1.25573 0.94110 0.91550 1.24977 0.96663 0.95431 0.97559 1.69979 1.38321 1.35852 1.09815 0.86482 0.82194 0.79355 0.79678 1.19565 1.21112 1.21179 1.20541 0.88493 0.92993 0.98247 1.22244 0.94558 0.98473 0.87712 1.21379 1.02189 0.94802 1.04102 1.21703 1.02082 1.01542 0.98423 1.23870 0.99829 0.86093 1.01811 1.84079 1.42570 1.38121 1.41664 1.20337 1.05234 0.92941 0.98598 0.92646 0.92462 0.92290 0.91049 0.90768 0.86500 0.86290 0.85794 0.92518 0.92291 0.93503 0.88188 0.94739 0.98448 0.93101 0.89372 0.94020 0.84197 0.84170 0.78826 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.09 -0.80 6.06 -27.88 -0.17 -0.97 16 3 C -0.04 -0.53 5.13 -104.64 -0.54 -1.07 16 4 C -0.17 -1.85 9.70 -39.56 -0.38 -2.23 16 5 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 6 C -0.22 -2.81 9.04 -39.44 -0.36 -3.17 16 7 C 0.14 2.18 6.69 -39.22 -0.26 1.92 16 8 O -0.28 -4.92 10.08 -19.44 -0.20 -5.11 16 9 C 0.06 0.93 4.82 37.16 0.18 1.11 16 10 C 0.06 1.12 5.17 -3.82 -0.02 1.10 16 11 N -0.52 -11.05 4.32 -237.52 -1.03 -12.07 16 12 C 0.19 4.94 4.59 -4.98 -0.02 4.92 16 13 C -0.50 -14.22 8.56 -34.44 -0.29 -14.52 16 14 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 17 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.13 2.26 5.37 -4.98 -0.03 2.23 16 22 C 0.02 0.41 6.13 -35.63 -0.22 0.19 16 23 C -0.20 -3.62 10.81 -39.70 -0.43 -4.05 16 24 C -0.22 -3.50 10.91 -39.70 -0.43 -3.94 16 25 C -0.05 -0.79 12.09 29.42 0.36 -0.43 16 26 O -0.17 -3.40 9.78 5.71 0.06 -3.34 16 27 C -0.15 -2.18 9.64 -39.44 -0.38 -2.56 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.37 6.30 -52.48 -0.33 1.04 16 36 H 0.06 0.75 5.62 -51.93 -0.29 0.45 16 37 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 38 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 39 H 0.10 2.01 7.44 -51.93 -0.39 1.63 16 40 H 0.03 0.98 6.45 -51.93 -0.33 0.65 16 41 H 0.00 -0.06 8.00 -51.93 -0.42 -0.48 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.09 1.33 5.87 -51.93 -0.30 1.02 16 44 H 0.04 0.74 8.05 -51.93 -0.42 0.32 16 45 H 0.14 2.28 8.06 -52.49 -0.42 1.86 16 46 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.19 2.40 8.06 -52.49 -0.42 1.97 16 48 H 0.13 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -32.82 397.00 -10.09 -42.90 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.49 Total: 2.99 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -3.13 Total: -22.17 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.29 Total: -38.33 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.14 Total: -8.45 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.82 -10.09 -42.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.934 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds