Wall clock time and date at job start Tue Mar 31 2020 15:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50710 * 109.47067 * 2 1 4 4 C 1.38287 * 119.96986 * 270.29679 * 3 2 1 5 5 C 1.38247 * 120.10407 * 180.25172 * 4 3 2 6 6 C 1.38159 * 120.06070 * 359.45669 * 5 4 3 7 7 C 1.38711 * 119.93959 * 0.26885 * 6 5 4 8 8 O 1.35905 * 120.05478 * 179.97438 * 7 6 5 9 9 C 1.42907 * 116.99756 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.46962 * 180.02562 * 9 8 7 11 11 N 1.46900 * 109.47299 * 64.99908 * 10 9 8 12 12 C 1.46903 * 111.00090 * 189.99922 * 11 10 9 13 13 C 1.50696 * 109.47012 * 75.73440 * 12 11 10 14 14 H 1.08003 * 120.00141 * 5.05905 * 13 12 11 15 15 C 1.37878 * 120.00092 * 185.05969 * 13 12 11 16 16 N 1.31513 * 119.99522 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99951 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47479 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47119 * 120.00210 * 17 15 13 20 20 H 1.48511 * 109.46813 * 239.99692 * 17 15 13 21 21 C 1.46902 * 111.00120 * 66.04385 * 11 10 9 22 22 C 1.50696 * 109.47206 * 195.89475 * 21 11 10 23 23 C 1.34517 * 125.78957 * 89.71988 * 22 21 11 24 24 C 1.41384 * 106.83994 * 179.88682 * 23 22 21 25 25 C 1.34519 * 106.84032 * 0.37390 * 24 23 22 26 26 O 1.34302 * 108.42001 * 359.76742 * 25 24 23 27 27 C 1.38122 * 119.97196 * 90.00125 * 3 2 1 28 28 H 1.09003 * 109.47168 * 59.99407 * 1 2 3 29 29 H 1.08997 * 109.47467 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47073 * 300.00323 * 1 2 3 31 31 H 1.08998 * 109.47020 * 240.00519 * 2 1 3 32 32 H 1.08997 * 109.47568 * 119.99992 * 2 1 3 33 33 H 1.07997 * 119.94802 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.96844 * 179.72100 * 5 4 3 35 35 H 1.08004 * 120.03093 * 180.25016 * 6 5 4 36 36 H 1.09007 * 109.46861 * 299.99866 * 9 8 7 37 37 H 1.08992 * 109.47170 * 59.99843 * 9 8 7 38 38 H 1.08999 * 109.47023 * 184.99697 * 10 9 8 39 39 H 1.08996 * 109.46915 * 304.99931 * 10 9 8 40 40 H 1.09004 * 109.46895 * 195.73514 * 12 11 10 41 41 H 1.08994 * 109.47074 * 315.73467 * 12 11 10 42 42 H 0.97007 * 119.99394 * 179.97438 * 16 15 13 43 43 H 1.08998 * 109.47085 * 315.89607 * 21 11 10 44 44 H 1.09006 * 109.47165 * 75.89395 * 21 11 10 45 45 H 1.07997 * 126.57970 * 0.02562 * 23 22 21 46 46 H 1.08001 * 126.57831 * 180.15585 * 24 23 22 47 47 H 1.08001 * 125.78671 * 179.74910 * 25 24 23 48 48 H 1.08002 * 120.02599 * 0.04491 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2567 2.0743 -1.1980 5 6 2.7225 3.3759 -1.2012 6 6 2.9542 4.0311 -0.0071 7 6 2.7244 3.3797 1.1958 8 8 2.9521 4.0217 2.3718 9 6 3.4284 5.3669 2.2949 10 6 3.6252 5.9197 3.7079 11 7 4.6911 5.1680 4.3838 12 6 4.7495 5.5063 5.8122 13 6 3.6127 4.8313 6.5351 14 1 2.9652 4.1484 6.0051 15 6 3.3990 5.0854 7.8734 16 7 4.1877 5.9165 8.5189 17 14 1.9902 4.2480 8.7697 18 1 1.2574 3.3663 7.8259 19 1 2.5293 3.4355 9.8897 20 1 1.0634 5.2771 9.3060 21 6 5.9892 5.3966 3.7351 22 6 6.9672 4.3412 4.1829 23 6 7.1696 3.1525 3.5866 24 6 8.1691 2.4854 4.3316 25 6 8.5117 3.3029 5.3434 26 8 7.7806 4.4254 5.2483 27 6 2.2623 2.0715 1.1965 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0713 1.5657 -2.1324 34 1 2.9013 3.8826 -2.1381 35 1 3.3142 5.0493 -0.0102 36 1 4.3792 5.3857 1.7621 37 1 2.7013 5.9799 1.7625 38 1 3.9029 6.9722 3.6509 39 1 2.6969 5.8188 4.2701 40 1 5.6979 5.1655 6.2277 41 1 4.6669 6.5863 5.9334 42 1 4.0371 6.0956 9.4603 43 1 5.8688 5.3447 2.6531 44 1 6.3654 6.3815 4.0120 45 1 6.6669 2.7802 2.7062 46 1 8.5764 1.5058 4.1294 47 1 9.2494 3.0920 6.1036 48 1 2.0830 1.5621 2.1318 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078666756.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:40 Heat of formation + Delta-G solvation = -15.538854 kcal Electronic energy + Delta-G solvation = -27949.057042 eV Core-core repulsion = 24163.237366 eV Total energy + Delta-G solvation = -3785.819676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.38094 -41.07157 -39.16526 -37.99130 -34.83466 -34.63570 -33.83579 -32.27081 -31.37024 -30.37925 -29.86610 -28.43579 -26.24900 -25.07993 -24.06284 -23.35464 -22.64366 -22.36130 -21.47224 -20.87011 -18.80315 -18.50763 -18.20737 -17.29657 -17.22334 -16.84912 -16.75115 -16.50270 -15.83855 -15.59671 -15.45543 -15.32497 -14.75591 -14.56468 -14.34426 -14.04412 -13.97160 -13.75149 -13.63824 -13.59726 -13.46749 -13.22669 -13.03468 -12.81285 -12.67405 -12.64839 -12.49385 -12.34137 -12.14233 -11.83970 -11.78452 -11.64280 -11.44772 -11.26453 -10.74658 -10.60509 -9.69411 -9.34590 -9.05469 -9.01283 -8.19842 -6.29020 0.43651 0.59423 0.88110 1.36545 1.37604 1.51738 1.78845 2.24410 2.37917 2.39186 2.87917 3.11829 3.28116 3.80477 3.85885 3.92634 4.04149 4.12202 4.15052 4.20109 4.21588 4.29804 4.32270 4.40928 4.46207 4.51812 4.54036 4.57716 4.66174 4.70803 4.84114 4.93220 4.97063 5.07222 5.10113 5.12808 5.15016 5.20387 5.25517 5.28803 5.39252 5.47920 5.56815 5.65500 5.72243 5.74079 5.97767 6.06156 6.26185 6.36661 6.52284 6.67473 6.86944 7.39865 8.90372 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.008687 B = 0.003763 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3222.565615 B = 7439.008756 C = 8949.336673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.047 4.047 4 C -0.166 4.166 5 C -0.077 4.077 6 C -0.225 4.225 7 C 0.118 3.882 8 O -0.321 6.321 9 C 0.072 3.928 10 C 0.061 3.939 11 N -0.533 5.533 12 C 0.210 3.790 13 C -0.514 4.514 14 H 0.054 0.946 15 C 0.005 3.995 16 N -0.933 5.933 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.274 1.274 21 C 0.128 3.872 22 C -0.014 4.014 23 C -0.205 4.205 24 C -0.221 4.221 25 C -0.056 4.056 26 O -0.202 6.202 27 C -0.179 4.179 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.140 0.860 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.004 0.996 41 H -0.028 1.028 42 H 0.263 0.737 43 H 0.122 0.878 44 H 0.039 0.961 45 H 0.152 0.848 46 H 0.173 0.827 47 H 0.230 0.770 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.097 -6.911 -21.305 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.047 4.047 4 C -0.184 4.184 5 C -0.095 4.095 6 C -0.244 4.244 7 C 0.072 3.928 8 O -0.234 6.234 9 C -0.003 4.003 10 C -0.066 4.066 11 N -0.258 5.258 12 C 0.084 3.916 13 C -0.553 4.553 14 H 0.073 0.927 15 C -0.193 4.193 16 N -0.574 5.574 17 Si 0.787 3.213 18 H -0.193 1.193 19 H -0.204 1.204 20 H -0.200 1.200 21 C 0.000 4.000 22 C -0.064 4.064 23 C -0.225 4.225 24 C -0.240 4.240 25 C -0.123 4.123 26 O -0.098 6.098 27 C -0.198 4.198 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.022 0.978 41 H -0.011 1.011 42 H 0.072 0.928 43 H 0.140 0.860 44 H 0.058 0.942 45 H 0.169 0.831 46 H 0.190 0.810 47 H 0.246 0.754 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.207 -7.130 -20.779 21.969 hybrid contribution -0.204 0.705 1.247 1.447 sum -0.411 -6.426 -19.532 20.566 Atomic orbital electron populations 1.21725 0.94059 1.02519 1.01825 1.20616 0.96690 0.91255 1.03668 1.19931 0.96083 0.96782 0.91880 1.21211 1.03667 0.95633 0.97863 1.21266 0.95762 0.94598 0.97834 1.21458 1.08936 1.02007 0.91949 1.19391 0.95256 0.92651 0.85503 1.86276 1.80368 1.28498 1.28276 1.22995 0.99572 0.80772 0.96939 1.22079 0.95954 0.94979 0.93608 1.62007 1.02692 1.57574 1.03566 1.19391 0.96136 0.92551 0.83494 1.21423 1.13557 1.25561 0.94745 0.92741 1.25818 0.99205 0.95972 0.98335 1.70093 1.39963 1.37037 1.10264 0.85440 0.79068 0.78486 0.78283 1.19348 1.20450 1.19953 1.20648 0.86764 0.92847 0.99709 1.22538 0.95693 0.99742 0.88464 1.21678 1.02214 0.94321 1.04295 1.22105 1.01430 1.02671 0.97747 1.24716 0.99733 0.85105 1.02704 1.84057 1.43479 1.39904 1.42398 1.20435 1.06981 0.93360 0.99002 0.91997 0.90872 0.93981 0.88927 0.91372 0.83625 0.83109 0.84203 0.90627 0.89485 0.91769 0.91279 0.97788 1.01068 0.92774 0.86049 0.94246 0.83062 0.80998 0.75395 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.89 71.98 0.71 -1.57 16 2 C -0.09 -1.48 6.06 29.85 0.18 -1.30 16 3 C -0.05 -1.05 5.13 -19.88 -0.10 -1.15 16 4 C -0.17 -3.14 9.70 22.28 0.22 -2.92 16 5 C -0.08 -1.45 10.04 22.25 0.22 -1.23 16 6 C -0.22 -5.24 9.04 22.36 0.20 -5.04 16 7 C 0.12 3.53 6.69 22.50 0.15 3.68 16 8 O -0.32 -11.29 10.08 -92.48 -0.93 -12.23 16 9 C 0.07 2.07 4.82 71.98 0.35 2.42 16 10 C 0.06 2.26 5.17 86.30 0.45 2.70 16 11 N -0.53 -23.37 4.32 -905.38 -3.91 -27.28 16 12 C 0.21 11.55 4.59 85.55 0.39 11.94 16 13 C -0.51 -30.50 8.56 25.60 0.22 -30.28 16 14 H 0.05 3.29 7.81 -2.91 -0.02 3.27 16 15 C 0.00 0.27 5.46 84.66 0.46 0.73 16 16 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 17 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 21 C 0.13 4.69 5.37 85.56 0.46 5.15 16 22 C -0.01 -0.56 6.13 24.83 0.15 -0.40 16 23 C -0.21 -7.15 10.81 22.19 0.24 -6.91 16 24 C -0.22 -6.80 10.91 22.19 0.24 -6.56 16 25 C -0.06 -1.80 12.09 66.97 0.81 -0.99 16 26 O -0.20 -8.33 9.78 -2.49 -0.02 -8.35 16 27 C -0.18 -5.21 9.64 22.36 0.22 -4.99 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 32 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 33 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 35 H 0.14 2.69 6.30 -2.91 -0.02 2.68 16 36 H 0.08 1.85 5.62 -2.38 -0.01 1.84 16 37 H 0.09 1.99 7.66 -2.39 -0.02 1.97 16 38 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 39 H 0.07 2.94 7.44 -2.39 -0.02 2.92 16 40 H 0.00 0.24 6.45 -2.38 -0.02 0.23 16 41 H -0.03 -1.66 8.00 -2.39 -0.02 -1.68 16 42 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 43 H 0.12 3.53 5.87 -2.39 -0.01 3.52 16 44 H 0.04 1.45 8.05 -2.38 -0.02 1.43 16 45 H 0.15 4.80 8.06 -2.91 -0.02 4.77 16 46 H 0.17 4.05 8.06 -2.91 -0.02 4.03 16 47 H 0.23 5.31 8.06 -2.91 -0.02 5.29 16 48 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -74.84 397.00 3.95 -70.90 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.94 Total: 22.65 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 5.57 Total: -36.73 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -3.63 Total: -84.57 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.96 Total: -20.58 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -74.84 3.95 -70.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078666756.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.357 kcal (2) G-P(sol) polarization free energy of solvation -74.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds