Wall clock time and date at job start Tue Mar 31 2020 15:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46811 * 2 1 4 4 C 1.53001 * 109.47212 * 119.99632 * 2 1 3 5 5 H 1.09002 * 109.49066 * 297.34817 * 4 2 1 6 6 C 1.52566 * 109.49257 * 177.29621 * 4 2 1 7 7 C 1.47091 * 114.32609 * 154.99871 * 6 4 2 8 8 C 1.54865 * 110.31906 * 62.80690 * 7 6 4 9 9 N 1.44579 * 109.57730 * 288.74262 * 8 7 6 10 10 S 1.65599 * 118.64379 * 270.71243 * 9 8 7 11 11 O 1.42093 * 104.27658 * 206.07312 * 10 9 8 12 12 O 1.42103 * 104.27955 * 333.93460 * 10 9 8 13 13 C 1.81402 * 104.44620 * 90.00180 * 10 9 8 14 14 C 1.53007 * 109.46898 * 175.33069 * 13 10 9 15 15 C 1.50697 * 115.54713 * 63.08163 * 14 13 10 16 16 H 1.08002 * 119.99980 * 264.79614 * 15 14 13 17 17 C 1.37875 * 120.00282 * 84.80817 * 15 14 13 18 18 N 1.31513 * 120.00141 * 3.41375 * 17 15 14 19 19 Si 1.86795 * 119.99945 * 183.42221 * 17 15 14 20 20 H 1.48497 * 109.47606 * 59.99621 * 19 17 15 21 21 H 1.48503 * 109.47092 * 179.97438 * 19 17 15 22 22 H 1.48510 * 109.47300 * 299.99409 * 19 17 15 23 23 C 1.53001 * 117.49881 * 277.40953 * 14 13 10 24 24 C 1.53004 * 117.49569 * 208.74769 * 14 13 10 25 25 C 1.47579 * 122.73244 * 90.76441 * 9 8 7 26 26 C 1.50886 * 109.50706 * 57.40126 * 4 2 1 27 27 H 1.08997 * 109.46962 * 292.93912 * 1 2 3 28 28 H 1.09000 * 109.47015 * 52.94198 * 1 2 3 29 29 H 1.09003 * 109.46704 * 172.93772 * 1 2 3 30 30 H 1.08995 * 109.47549 * 239.99995 * 2 1 3 31 31 H 1.08994 * 109.47305 * 306.26338 * 3 2 1 32 32 H 1.08994 * 109.47573 * 66.26520 * 3 2 1 33 33 H 1.09004 * 109.46704 * 186.26458 * 3 2 1 34 34 H 1.09004 * 108.51110 * 33.74724 * 6 4 2 35 35 H 1.09001 * 108.39416 * 276.17044 * 6 4 2 36 36 H 1.08999 * 109.33042 * 302.54462 * 7 6 4 37 37 H 1.09003 * 109.18733 * 182.97722 * 7 6 4 38 38 H 1.08997 * 109.44825 * 48.77029 * 8 7 6 39 39 H 1.09006 * 109.44794 * 168.71690 * 8 7 6 40 40 H 1.08995 * 109.47395 * 295.32806 * 13 10 9 41 41 H 1.08994 * 109.47167 * 55.33113 * 13 10 9 42 42 H 0.96999 * 120.00200 * 185.02673 * 18 17 15 43 43 H 1.09001 * 117.49683 * 359.97438 * 23 14 13 44 44 H 1.09001 * 117.49634 * 145.02387 * 23 14 13 45 45 H 1.09000 * 117.49506 * 214.97865 * 24 14 13 46 46 H 1.08999 * 117.50190 * 0.02562 * 24 14 13 47 47 H 1.08996 * 108.94553 * 197.15054 * 25 9 8 48 48 H 1.09005 * 108.89582 * 78.45896 * 25 9 8 49 49 H 1.09006 * 109.36177 * 332.05435 * 26 4 2 50 50 H 1.08996 * 109.36483 * 91.66905 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.7163 -0.1808 2.1388 6 6 3.5642 -0.7805 1.2163 7 6 4.1947 -0.9002 2.5398 8 6 3.7741 -2.2275 3.2178 9 7 2.3867 -2.1494 3.6166 10 16 2.0250 -1.5573 5.1202 11 8 0.7777 -2.1568 5.4422 12 8 3.1878 -1.8258 5.8917 13 6 1.8269 0.2282 4.8679 14 6 1.3730 0.8807 6.1753 15 6 2.3447 0.7811 7.3229 16 1 2.2452 -0.0138 8.0473 17 6 3.3605 1.7049 7.4484 18 7 3.4417 2.7114 6.6058 19 14 4.6215 1.5267 8.8149 20 1 5.3313 0.2308 8.6676 21 1 5.6014 2.6395 8.7324 22 1 3.9345 1.5681 10.1309 23 6 -0.1198 0.8336 6.5074 24 6 0.5271 2.1516 6.0740 25 6 1.2791 -2.5765 2.7398 26 6 1.4856 -2.1241 1.2829 27 1 -0.3633 0.4005 0.9464 28 1 -0.3633 0.6193 -0.8201 29 1 -0.3633 -1.0199 -0.1264 30 1 1.8934 -0.5138 -0.8899 31 1 1.5880 1.9877 -0.8286 32 1 1.7711 1.9230 0.9407 33 1 3.1242 1.4446 -0.1121 34 1 3.9355 0.1253 0.7367 35 1 3.8621 -1.6375 0.6122 36 1 3.8849 -0.0622 3.1642 37 1 5.2784 -0.8821 2.4234 38 1 3.9042 -3.0508 2.5155 39 1 4.3954 -2.3988 4.0969 40 1 2.7789 0.6592 4.5581 41 1 1.0792 0.4051 4.0949 42 1 4.1961 3.3197 6.6481 43 1 -0.7785 0.3381 5.7942 44 1 -0.3991 0.7310 7.5560 45 1 0.6731 2.9154 6.8378 46 1 0.2936 2.5226 5.0761 47 1 0.3476 -2.1515 3.1138 48 1 1.2073 -3.6638 2.7659 49 1 0.5305 -2.1478 0.7581 50 1 2.1837 -2.8005 0.7898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451199727.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:35 Heat of formation + Delta-G solvation = -66.080886 kcal Electronic energy + Delta-G solvation = -29269.354152 eV Core-core repulsion = 25616.786761 eV Total energy + Delta-G solvation = -3652.567391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.181 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.44327 -36.73539 -36.35390 -35.85473 -35.02402 -32.91324 -32.01115 -31.33545 -28.21053 -27.59023 -25.81729 -25.42458 -25.08277 -21.22462 -21.17050 -20.99958 -19.76270 -19.31765 -18.08854 -17.12719 -16.48219 -16.12943 -15.35669 -15.10154 -14.75600 -14.71316 -14.44505 -14.35266 -13.82305 -13.60541 -13.36322 -13.21718 -13.01986 -12.58370 -12.31833 -12.22622 -12.02200 -11.83902 -11.78719 -11.48745 -11.39677 -11.22255 -11.17909 -11.05922 -11.01053 -10.87176 -10.78585 -10.59755 -10.47308 -10.43738 -10.37480 -10.15090 -10.06768 -10.02910 -9.59728 -9.05634 -8.68495 -8.49100 -8.02261 -6.11605 -4.22905 1.08443 3.34506 3.34894 3.36677 3.45868 4.40568 4.51468 4.61833 4.69733 4.76080 4.88534 4.93303 5.09218 5.11905 5.16053 5.21074 5.28969 5.34522 5.44094 5.49149 5.59663 5.63206 5.65348 5.71629 5.75247 5.81928 5.84611 5.89281 5.96226 5.99689 6.06411 6.07638 6.17790 6.23706 6.26033 6.27412 6.33787 6.40466 6.43519 6.48000 6.55208 6.67442 6.74635 7.01917 7.06248 7.26026 7.46949 7.81441 8.22210 8.82486 9.48771 10.95852 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013451 B = 0.005063 C = 0.004856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.060033 B = 5529.122419 C = 5764.281021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.083 4.083 5 H 0.076 0.924 6 C -0.111 4.111 7 C -0.150 4.150 8 C 0.117 3.883 9 N -1.002 6.002 10 S 2.601 3.399 11 O -0.974 6.974 12 O -0.948 6.948 13 C -0.553 4.553 14 C 0.041 3.959 15 C -0.514 4.514 16 H 0.066 0.934 17 C 0.083 3.917 18 N -0.874 5.874 19 Si 0.887 3.113 20 H -0.267 1.267 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.210 4.210 24 C -0.134 4.134 25 C 0.124 3.876 26 C -0.131 4.131 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.096 0.904 42 H 0.262 0.738 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.079 0.921 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -5.885 -15.571 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.102 4.102 5 H 0.094 0.906 6 C -0.149 4.149 7 C -0.189 4.189 8 C -0.010 4.010 9 N -0.837 5.837 10 S 2.699 3.301 11 O -0.964 6.964 12 O -0.938 6.938 13 C -0.686 4.686 14 C 0.039 3.961 15 C -0.551 4.551 16 H 0.084 0.916 17 C -0.122 4.122 18 N -0.510 5.510 19 Si 0.713 3.287 20 H -0.192 1.192 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.248 4.248 24 C -0.173 4.173 25 C -0.001 4.001 26 C -0.170 4.170 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.099 0.901 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.029 -6.277 -14.835 16.236 hybrid contribution 0.800 0.683 0.065 1.054 sum -1.229 -5.594 -14.770 15.842 Atomic orbital electron populations 1.21958 0.95467 1.01513 1.01985 1.21147 0.95515 0.96174 0.97985 1.21926 1.01011 0.95927 1.01972 1.20782 0.95394 0.95753 0.98256 0.90606 1.20535 0.94860 1.01932 0.97531 1.21424 1.00771 0.99124 0.97555 1.21303 0.81504 0.97252 1.00904 1.57518 1.11384 1.79422 1.35392 1.05377 0.74105 0.78130 0.72474 1.93483 1.45416 1.75450 1.82066 1.93520 1.49454 1.84199 1.66596 1.30108 1.09746 1.22405 1.06357 1.18281 0.88616 0.98520 0.90711 1.20484 1.12238 1.13033 1.09323 0.91572 1.24919 0.97385 0.93822 0.96076 1.70003 1.29619 1.14212 1.37145 0.86715 0.81316 0.78226 0.82422 1.19219 1.21156 1.19914 1.23191 0.97229 1.03383 1.00951 1.22509 1.03635 0.91254 0.99913 1.21547 0.88614 0.99631 0.90314 1.21976 1.02096 0.96736 0.96177 0.92383 0.92942 0.92373 0.91561 0.93077 0.92254 0.92442 0.91929 0.92641 0.91139 0.90774 0.90697 0.88891 0.85185 0.88518 0.92783 0.90916 0.89632 0.89312 0.91759 0.90100 0.91991 0.90267 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.70 37.16 0.32 -1.07 16 2 C -0.09 -0.86 2.48 -90.62 -0.22 -1.09 16 3 C -0.15 -1.54 8.81 37.16 0.33 -1.21 16 4 C -0.08 -0.92 1.39 -91.90 -0.13 -1.05 16 5 H 0.08 0.99 6.24 -51.93 -0.32 0.66 16 6 C -0.11 -1.22 4.58 -29.79 -0.14 -1.35 16 7 C -0.15 -1.93 5.74 -28.58 -0.16 -2.09 16 8 C 0.12 1.61 5.60 -4.08 -0.02 1.59 16 9 N -1.00 -15.53 2.46 -113.32 -0.28 -15.81 16 10 S 2.60 53.67 5.02 -107.50 -0.54 53.13 16 11 O -0.97 -21.72 16.70 -57.54 -0.96 -22.68 16 12 O -0.95 -22.79 15.92 -57.54 -0.92 -23.71 16 13 C -0.55 -11.57 5.47 37.16 0.20 -11.36 16 14 C 0.04 1.00 1.43 -155.66 -0.22 0.78 16 15 C -0.51 -14.12 7.99 -34.44 -0.28 -14.40 16 16 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 17 C 0.08 2.26 5.43 -17.82 -0.10 2.17 16 18 N -0.87 -23.97 12.69 55.43 0.70 -23.27 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.21 -4.67 9.96 -26.69 -0.27 -4.93 16 24 C -0.13 -3.08 9.20 -26.69 -0.25 -3.32 16 25 C 0.12 1.60 5.90 -2.96 -0.02 1.58 16 26 C -0.13 -1.33 5.10 -27.30 -0.14 -1.47 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.06 0.47 6.22 -51.93 -0.32 0.15 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.47 8.13 -51.93 -0.42 0.04 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.57 6.36 -51.93 -0.33 0.24 16 34 H 0.06 0.66 5.73 -51.93 -0.30 0.36 16 35 H 0.05 0.54 7.35 -51.93 -0.38 0.15 16 36 H 0.07 1.07 6.17 -51.93 -0.32 0.75 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 39 H 0.09 1.43 6.75 -51.93 -0.35 1.08 16 40 H 0.13 2.80 6.46 -51.93 -0.34 2.46 16 41 H 0.10 1.73 7.24 -51.93 -0.38 1.35 16 42 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 43 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 45 H 0.09 2.18 8.14 -51.93 -0.42 1.76 16 46 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.08 1.08 7.19 -51.93 -0.37 0.70 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.08 0.69 5.44 -51.93 -0.28 0.41 16 50 H 0.06 0.60 7.31 -51.93 -0.38 0.22 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -31.40 383.61 -11.00 -42.40 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.69 Total: 4.88 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: -1.08 Total: -37.23 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.42 Total: -39.08 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -1.88 Total: -46.38 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 53.67 SS G_CDS: -0.54 Total: 53.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.40 -11.00 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451199727.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.680 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds