Wall clock time and date at job start Tue Mar 31 2020 16:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.32777 * 2 1 4 4 C 1.47101 * 109.18838 * 240.43826 * 2 1 3 5 5 C 1.52561 * 114.32694 * 177.02485 * 4 2 1 6 6 C 1.50880 * 109.36226 * 85.01011 * 5 4 2 7 7 C 1.53608 * 109.95262 * 268.02412 * 6 5 4 8 8 N 1.47604 * 112.34111 * 40.83296 * 7 6 5 9 9 C 1.34773 * 118.64444 * 222.04152 * 8 7 6 10 10 O 1.21715 * 120.00184 * 184.69109 * 9 8 7 11 11 C 1.46258 * 119.99848 * 4.68644 * 9 8 7 12 12 C 1.35020 * 120.00105 * 186.84421 * 11 9 8 13 13 C 1.46966 * 119.99827 * 11.49391 * 12 11 9 14 14 C 1.40023 * 120.09882 * 223.43233 * 13 12 11 15 15 C 1.37593 * 119.89412 * 180.25451 * 14 13 12 16 16 C 1.39179 * 120.10465 * 359.45375 * 15 14 13 17 17 O 1.35571 * 119.90075 * 180.28048 * 16 15 14 18 18 C 1.34784 * 116.99983 * 186.02306 * 17 16 15 19 19 H 1.07998 * 119.99818 * 5.34337 * 18 17 16 20 20 C 1.38710 * 119.99969 * 185.34794 * 18 17 16 21 21 N 1.31513 * 120.00369 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47199 * 90.00009 * 22 20 18 24 24 H 1.48499 * 109.47020 * 209.99929 * 22 20 18 25 25 H 1.48503 * 109.47031 * 329.99504 * 22 20 18 26 26 C 1.39173 * 120.19791 * 0.54924 * 16 15 14 27 27 C 1.37598 * 120.10266 * 359.72784 * 26 16 15 28 28 C 1.44581 * 122.71340 * 41.75124 * 8 7 6 29 29 H 1.09005 * 109.46720 * 300.34369 * 1 2 3 30 30 H 1.08995 * 109.47735 * 60.34442 * 1 2 3 31 31 H 1.08996 * 109.46968 * 180.35074 * 1 2 3 32 32 H 1.09000 * 108.50797 * 298.27702 * 4 2 1 33 33 H 1.08996 * 108.50853 * 55.92239 * 4 2 1 34 34 H 1.08999 * 109.48907 * 204.97320 * 5 4 2 35 35 H 1.09004 * 109.49278 * 325.04118 * 5 4 2 36 36 H 1.08997 * 109.36547 * 28.30120 * 6 5 4 37 37 H 1.08995 * 109.36886 * 148.04910 * 6 5 4 38 38 H 1.08998 * 108.93514 * 280.02265 * 7 6 5 39 39 H 1.09000 * 108.75047 * 161.51105 * 7 6 5 40 40 H 1.07998 * 119.99981 * 6.84163 * 11 9 8 41 41 H 1.08000 * 119.99956 * 191.49218 * 12 11 9 42 42 H 1.08005 * 120.05190 * 359.97438 * 14 13 12 43 43 H 1.08008 * 119.94971 * 179.72193 * 15 14 13 44 44 H 0.97000 * 120.00349 * 180.02562 * 21 20 18 45 45 H 1.08008 * 119.94501 * 179.75136 * 26 16 15 46 46 H 1.08006 * 120.05028 * 179.97438 * 27 26 16 47 47 H 1.09004 * 109.44682 * 29.57652 * 28 8 7 48 48 H 1.08999 * 109.44748 * 149.49176 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8907 1.0286 0.0000 4 6 2.0134 -0.6854 -1.2084 5 6 3.5311 -0.6904 -1.3634 6 6 4.1093 -1.8487 -0.5886 7 6 4.4778 -1.3970 0.8326 8 7 3.4633 -0.4976 1.4162 9 6 3.8783 0.5812 2.1092 10 8 3.0665 1.2916 2.6729 11 6 5.3042 0.8981 2.1841 12 6 5.7331 1.8940 2.9885 13 6 4.8179 2.4899 3.9721 14 6 4.7771 3.8792 4.1418 15 6 3.9225 4.4322 5.0675 16 6 3.0912 3.6137 5.8266 17 8 2.2467 4.1634 6.7335 18 6 1.5598 3.3142 7.5233 19 1 1.7584 2.2536 7.4771 20 6 0.5979 3.8024 8.3953 21 7 0.3564 5.0939 8.4519 22 14 -0.3536 2.6255 9.4904 23 1 0.3682 2.4532 10.7767 24 1 -1.7070 3.1777 9.7523 25 1 -0.4783 1.3101 8.8126 26 6 3.1284 2.2323 5.6614 27 6 3.9839 1.6700 4.7420 28 6 2.0426 -0.7229 1.2699 29 1 -0.3633 0.5192 0.8869 30 1 -0.3634 0.5084 -0.8930 31 1 -0.3633 -1.0276 0.0063 32 1 1.6647 -1.7178 -1.1836 33 1 1.5802 -0.1959 -2.0806 34 1 3.7887 -0.7933 -2.4175 35 1 3.9391 0.2443 -0.9786 36 1 3.3739 -2.6515 -0.5361 37 1 5.0044 -2.2110 -1.0941 38 1 5.4355 -0.8774 0.8014 39 1 4.5757 -2.2785 1.4661 40 1 6.0140 0.3354 1.5960 41 1 6.7486 2.2528 2.9092 42 1 5.4187 4.5154 3.5501 43 1 3.8935 5.5034 5.2023 44 1 -0.3160 5.4354 9.0620 45 1 2.4844 1.6008 6.2555 46 1 4.0124 0.5979 4.6148 47 1 1.8521 -1.7924 1.1805 48 1 1.5215 -0.3337 2.1445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492732607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:16 Heat of formation + Delta-G solvation = -12.855790 kcal Electronic energy + Delta-G solvation = -28390.923310 eV Core-core repulsion = 24605.219980 eV Total energy + Delta-G solvation = -3785.703329 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.42986 -38.93436 -37.88633 -36.30951 -34.64761 -33.38833 -32.89684 -32.08227 -30.04868 -28.43172 -28.30374 -26.46939 -25.23111 -24.56071 -22.94917 -21.77077 -21.33062 -20.55336 -19.98913 -18.09754 -17.96638 -17.47248 -16.68025 -16.30833 -15.59053 -14.91222 -14.73747 -14.55976 -14.43639 -14.09575 -13.86058 -13.68652 -13.53314 -13.43436 -13.38777 -12.87252 -12.76465 -12.55277 -12.39897 -12.24130 -11.98361 -11.79505 -11.65933 -11.44978 -11.29636 -11.12280 -10.90910 -10.82881 -10.66412 -10.61387 -10.54784 -10.51906 -10.39896 -9.42562 -9.30918 -9.16443 -8.66031 -8.51105 -7.85047 -6.83953 -6.43526 -3.98823 1.28309 2.45096 2.74064 3.15175 3.15509 3.16641 3.20919 3.65793 3.99434 4.37932 4.59917 4.64002 4.72756 4.74531 4.81870 4.93522 5.06289 5.16437 5.25395 5.33267 5.34674 5.38156 5.44314 5.51033 5.55163 5.61449 5.67209 5.73919 5.79168 5.81962 5.83573 5.88958 5.92325 6.04533 6.07937 6.21150 6.28359 6.29016 6.34949 6.47618 6.63243 6.79341 6.83876 7.07148 7.15732 7.36206 7.49018 7.54285 7.58877 7.95621 8.03450 8.58538 9.02442 9.74392 10.74482 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003142 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.805914 B = 8908.418545 C =10031.897711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.132 4.132 7 C 0.107 3.893 8 N -0.610 5.610 9 C 0.537 3.463 10 O -0.508 6.508 11 C -0.272 4.272 12 C 0.027 3.973 13 C -0.189 4.189 14 C -0.045 4.045 15 C -0.210 4.210 16 C 0.171 3.829 17 O -0.173 6.173 18 C -0.388 4.388 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.243 4.243 27 C 0.017 3.983 28 C 0.124 3.876 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.270 0.730 45 H 0.123 0.877 46 H 0.096 0.904 47 H 0.067 0.933 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.124 -14.420 -18.267 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.170 4.170 7 C -0.016 4.016 8 N -0.344 5.344 9 C 0.328 3.672 10 O -0.384 6.384 11 C -0.293 4.293 12 C 0.007 3.993 13 C -0.190 4.190 14 C -0.063 4.063 15 C -0.230 4.230 16 C 0.117 3.883 17 O -0.075 6.075 18 C -0.464 4.464 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.262 4.262 27 C -0.001 4.001 28 C 0.001 3.999 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.080 0.920 45 H 0.141 0.859 46 H 0.114 0.886 47 H 0.086 0.914 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.429 -13.667 -17.759 23.609 hybrid contribution -0.498 -0.808 0.241 0.979 sum 6.932 -14.476 -17.518 23.758 Atomic orbital electron populations 1.21779 0.94617 1.01600 1.02221 1.20753 0.95931 1.00746 0.95250 0.90912 1.20516 0.95572 1.00755 0.97964 1.21055 0.95745 0.99111 0.99513 1.21729 1.01559 0.98528 0.95183 1.21947 0.91914 0.93888 0.93873 1.47645 1.06047 1.26325 1.54412 1.18547 0.89923 0.80226 0.78501 1.90987 1.55758 1.48073 1.43597 1.22778 0.94547 1.04835 1.07117 1.22351 0.97468 0.90351 0.89129 1.18289 1.04531 0.93334 1.02878 1.20621 0.96830 0.93282 0.95602 1.19990 1.01829 0.98969 1.02164 1.19542 0.89222 0.91484 0.88090 1.83917 1.47537 1.35490 1.40601 1.21378 1.18129 0.90478 1.16448 0.88986 1.25310 0.96594 0.96830 0.97810 1.70022 1.31652 1.12025 1.35820 0.85712 0.78712 0.79393 0.79645 1.19836 1.20224 1.19149 1.20954 1.05298 0.94818 1.05175 1.20544 0.91016 0.97284 0.91276 1.21383 0.81026 0.99318 0.98199 0.92031 0.92712 0.92848 0.92473 0.92660 0.92123 0.91479 0.91612 0.90871 0.89585 0.92247 0.85877 0.86180 0.87231 0.86691 0.91982 0.85886 0.88584 0.91449 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.10 37.15 0.34 -1.13 16 2 C -0.11 -1.18 2.61 -92.48 -0.24 -1.42 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 4 C -0.11 -0.97 4.37 -29.79 -0.13 -1.10 16 5 C -0.12 -0.94 5.50 -28.02 -0.15 -1.10 16 6 C -0.13 -0.90 5.71 -27.48 -0.16 -1.06 16 7 C 0.11 0.89 5.98 -3.12 -0.02 0.87 16 8 N -0.61 -7.33 2.25 -174.45 -0.39 -7.72 16 9 C 0.54 8.23 6.57 -13.04 -0.09 8.14 16 10 O -0.51 -10.13 11.59 5.18 0.06 -10.07 16 11 C -0.27 -3.55 9.15 -37.50 -0.34 -3.89 16 12 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 13 C -0.19 -3.55 4.54 -105.03 -0.48 -4.03 16 14 C -0.04 -0.87 9.78 -39.15 -0.38 -1.25 16 15 C -0.21 -4.75 9.97 -39.47 -0.39 -5.14 16 16 C 0.17 4.41 6.66 -38.88 -0.26 4.15 16 17 O -0.17 -5.14 9.74 0.73 0.01 -5.13 16 18 C -0.39 -11.23 9.44 30.91 0.29 -10.93 16 19 H 0.09 2.49 5.27 -52.49 -0.28 2.21 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.74 13.67 55.48 0.76 -24.98 16 22 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 C -0.24 -5.78 9.11 -39.47 -0.36 -6.14 16 27 C 0.02 0.36 6.60 -39.15 -0.26 0.10 16 28 C 0.12 1.48 4.74 -4.09 -0.02 1.46 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.46 7.36 -51.93 -0.38 0.07 16 33 H 0.05 0.47 8.11 -51.93 -0.42 0.05 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.66 7.48 -51.93 -0.39 0.27 16 36 H 0.07 0.44 7.32 -51.93 -0.38 0.06 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.64 5.18 -51.93 -0.27 0.37 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.12 1.17 5.76 -52.49 -0.30 0.86 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.12 2.49 8.06 -52.48 -0.42 2.06 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.12 2.96 5.69 -52.48 -0.30 2.66 16 46 H 0.10 1.86 7.02 -52.48 -0.37 1.49 16 47 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 48 H 0.09 1.27 7.20 -51.93 -0.37 0.90 16 LS Contribution 377.18 15.07 5.68 5.68 Total: -1.00 -33.40 377.18 -9.26 -42.65 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.24 Total: 5.00 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -3.11 Total: -21.43 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.37 Total: -32.71 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: 0.07 Total: -15.20 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.40 -9.26 -42.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492732607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.798 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds