Wall clock time and date at job start Tue Mar 31 2020 15:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47087 * 2 1 4 4 H 1.09006 * 109.47296 * 54.48368 * 3 2 1 5 5 C 1.50706 * 109.47176 * 174.47950 * 3 2 1 6 6 H 1.07999 * 120.00113 * 119.99670 * 5 3 2 7 7 C 1.37877 * 119.99817 * 300.00152 * 5 3 2 8 8 N 1.31515 * 120.00246 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99915 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47117 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47249 * 120.00194 * 9 7 5 12 12 H 1.48500 * 109.47063 * 239.99801 * 9 7 5 13 13 N 1.46902 * 109.47349 * 294.47968 * 3 2 1 14 14 C 1.46895 * 110.99805 * 101.24727 * 13 3 2 15 15 H 1.09001 * 109.47495 * 325.81878 * 14 13 3 16 16 C 1.53001 * 109.47283 * 85.82120 * 14 13 3 17 17 C 1.52996 * 109.46855 * 294.42240 * 16 14 13 18 18 C 1.53000 * 109.46865 * 205.81922 * 14 13 3 19 19 C 1.50704 * 109.47381 * 65.00178 * 18 14 13 20 20 C 1.38235 * 119.99756 * 269.72810 * 19 18 14 21 21 C 1.38231 * 120.00001 * 179.74424 * 20 19 18 22 22 C 1.38243 * 119.99769 * 0.54426 * 21 20 19 23 23 C 1.50697 * 119.99850 * 179.72529 * 22 21 20 24 24 F 1.39904 * 109.47293 * 269.98464 * 23 22 21 25 25 F 1.39905 * 109.47368 * 29.98316 * 23 22 21 26 26 F 1.39904 * 109.46766 * 149.98265 * 23 22 21 27 27 C 1.38236 * 119.99706 * 359.71171 * 22 21 20 28 28 C 1.38226 * 120.00280 * 89.99686 * 19 18 14 29 29 H 1.09004 * 109.47363 * 176.69181 * 1 2 3 30 30 H 1.09003 * 109.46938 * 56.69538 * 1 2 3 31 31 H 1.09005 * 109.47131 * 296.69412 * 1 2 3 32 32 H 1.09005 * 109.46779 * 119.99956 * 2 1 3 33 33 H 1.09000 * 109.47292 * 240.00045 * 2 1 3 34 34 H 0.96999 * 120.00255 * 179.97438 * 8 7 5 35 35 H 1.00899 * 110.99950 * 225.20232 * 13 3 2 36 36 H 1.09000 * 109.47066 * 54.42132 * 16 14 13 37 37 H 1.08993 * 109.47097 * 174.41996 * 16 14 13 38 38 H 1.08997 * 109.47337 * 306.33109 * 17 16 14 39 39 H 1.09007 * 109.47284 * 66.33104 * 17 16 14 40 40 H 1.08997 * 109.47479 * 186.32555 * 17 16 14 41 41 H 1.08996 * 109.47241 * 185.00409 * 18 14 13 42 42 H 1.09002 * 109.47308 * 304.99897 * 18 14 13 43 43 H 1.08008 * 120.00216 * 359.97438 * 20 19 18 44 44 H 1.07998 * 120.00324 * 180.27779 * 21 20 19 45 45 H 1.07998 * 119.99314 * 179.97438 * 27 22 21 46 46 H 1.08008 * 119.99894 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9841 0.8365 5 6 3.5408 1.4447 0.1367 6 1 4.1527 1.8869 -0.6356 7 6 4.1326 0.8821 1.2476 8 7 3.3875 0.3440 2.1883 9 14 5.9930 0.8842 1.4168 10 1 6.5970 1.5448 0.2318 11 1 6.3775 1.6235 2.6459 12 1 6.4834 -0.5146 1.5067 13 7 1.6621 2.0955 -1.2605 14 6 0.4915 2.9630 -1.0736 15 1 -0.1723 2.5224 -0.3297 16 6 0.9498 4.3421 -0.5952 17 6 1.5723 4.2180 0.7969 18 6 -0.2545 3.1059 -2.4018 19 6 -0.8118 1.7670 -2.8116 20 6 -0.0581 0.9160 -3.5981 21 6 -0.5671 -0.3143 -3.9696 22 6 -1.8345 -0.6889 -3.5640 23 6 -2.3919 -2.0276 -3.9741 24 9 -3.0740 -1.8965 -5.1885 25 9 -1.3444 -2.9428 -4.1242 26 9 -3.2746 -2.4863 -2.9905 27 6 -2.5903 0.1643 -2.7819 28 6 -2.0789 1.3922 -2.4057 29 1 -0.3634 -1.0260 -0.0593 30 1 -0.3633 0.5643 -0.8589 31 1 -0.3634 0.4617 0.9182 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.8039 -0.0521 2.9697 35 1 2.4377 2.6129 -1.6463 36 1 1.6894 4.7403 -1.2898 37 1 0.0932 5.0147 -0.5515 38 1 0.8719 3.7166 1.4648 39 1 2.4925 3.6371 0.7330 40 1 1.7962 5.2117 1.1847 41 1 -1.0706 3.8189 -2.2852 42 1 0.4333 3.4631 -3.1682 43 1 0.9301 1.2109 -3.9193 44 1 0.0235 -0.9810 -4.5804 45 1 -3.5805 -0.1283 -2.4653 46 1 -2.6697 2.0590 -1.7951 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597087708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:33 Heat of formation + Delta-G solvation = -145.161882 kcal Electronic energy + Delta-G solvation = -29710.389704 eV Core-core repulsion = 25377.092411 eV Total energy + Delta-G solvation = -4333.297292 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.166 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.09430 -47.60225 -47.57224 -39.56455 -37.50807 -34.17216 -32.63889 -31.58324 -30.93271 -29.76730 -28.85346 -26.46763 -25.04683 -23.15407 -22.76716 -22.50126 -20.96035 -20.12083 -19.29161 -18.44085 -18.33262 -18.27701 -16.51169 -15.57407 -15.39523 -14.94576 -14.57573 -14.47281 -14.41149 -14.32112 -14.09730 -14.02068 -13.81793 -13.72667 -13.60706 -13.29496 -13.22868 -12.62501 -12.58929 -12.46459 -12.08023 -11.95253 -11.57184 -11.36917 -11.23899 -11.04050 -10.97557 -10.82866 -10.69404 -10.59748 -10.59198 -10.24887 -10.05953 -9.60882 -9.46681 -8.84106 -8.76418 -8.57164 -8.43695 -7.16850 -6.03960 -4.11302 1.12700 1.48706 2.75393 3.25416 3.34681 3.36945 3.66973 3.82613 4.11688 4.37668 4.51120 4.86756 4.95645 4.98869 5.15060 5.27351 5.40402 5.47330 5.56902 5.57014 5.73416 5.76766 5.85704 6.01122 6.09401 6.21957 6.27953 6.34000 6.37019 6.40950 6.43372 6.47259 6.53646 6.68232 6.72650 6.79793 6.98524 7.07316 7.15598 7.24412 7.50839 7.61584 7.76706 7.97947 8.29581 8.40695 8.68921 9.02847 9.54786 11.00204 Molecular weight = 329.17amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.003798 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.827587 B = 7371.213510 C = 8477.750200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C 0.212 3.788 4 H 0.025 0.975 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.679 5.679 14 C 0.090 3.910 15 H 0.076 0.924 16 C -0.144 4.144 17 C -0.161 4.161 18 C -0.078 4.078 19 C -0.017 4.017 20 C -0.086 4.086 21 C -0.071 4.071 22 C -0.196 4.196 23 C 0.508 3.492 24 F -0.183 7.183 25 F -0.178 7.178 26 F -0.180 7.180 27 C -0.074 4.074 28 C -0.126 4.126 29 H 0.022 0.978 30 H 0.059 0.941 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.330 0.670 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 2.726 -10.620 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C 0.105 3.895 4 H 0.043 0.957 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.310 5.310 14 C -0.022 4.022 15 H 0.094 0.906 16 C -0.183 4.183 17 C -0.218 4.218 18 C -0.116 4.116 19 C -0.017 4.017 20 C -0.104 4.104 21 C -0.089 4.089 22 C -0.197 4.197 23 C 0.454 3.546 24 F -0.164 7.164 25 F -0.160 7.160 26 F -0.162 7.162 27 C -0.092 4.092 28 C -0.144 4.144 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.147 0.853 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.153 0.847 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.743 2.042 -10.667 15.995 hybrid contribution 1.323 0.258 0.766 1.550 sum -10.420 2.301 -9.902 14.557 Atomic orbital electron populations 1.21990 0.99792 0.98869 1.00227 1.21503 0.91423 0.99814 1.01406 1.19314 0.93947 0.91033 0.85234 0.95743 1.21450 0.91734 1.38093 1.04856 0.92531 1.24888 0.97767 0.95149 0.95838 1.69898 1.34592 1.38417 1.09338 0.86601 0.86123 0.77729 0.77882 1.19860 1.21196 1.21078 1.60813 1.07095 1.31941 1.31111 1.21656 0.94669 0.91684 0.94157 0.90579 1.22220 0.99888 0.98106 0.98088 1.22025 1.03478 1.00718 0.95628 1.20815 0.99308 0.92582 0.98903 1.19961 0.92539 0.96360 0.92842 1.20992 0.99537 0.92695 0.97134 1.20886 0.93080 0.96860 0.98059 1.19797 0.98317 0.94114 1.07503 1.18414 0.75551 0.86053 0.74550 1.93197 1.80835 1.96119 1.46277 1.93189 1.57665 1.69555 1.95552 1.93174 1.70160 1.90429 1.62415 1.20744 0.99306 0.93537 0.95602 1.20959 0.96046 0.96353 1.01067 0.95897 0.92208 0.95131 0.89723 0.94941 0.93022 0.85264 0.92457 0.93215 0.93202 0.89008 0.94448 0.91372 0.90830 0.84663 0.85354 0.85521 0.85539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.94 37.16 0.33 -2.74 16 2 C -0.10 -2.40 5.45 -26.73 -0.15 -2.54 16 3 C 0.21 4.75 1.06 -68.86 -0.07 4.68 16 4 H 0.02 0.60 4.94 -51.93 -0.26 0.35 16 5 C -0.52 -13.12 7.58 -34.44 -0.26 -13.38 16 6 H 0.06 1.41 7.41 -52.49 -0.39 1.03 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -24.19 11.29 55.43 0.63 -23.56 16 9 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -12.27 5.18 -100.95 -0.52 -12.80 16 14 C 0.09 1.36 1.51 -67.71 -0.10 1.26 16 15 H 0.08 1.30 6.20 -51.93 -0.32 0.98 16 16 C -0.14 -2.08 5.39 -26.73 -0.14 -2.23 16 17 C -0.16 -2.77 8.40 37.16 0.31 -2.46 16 18 C -0.08 -0.96 5.03 -27.88 -0.14 -1.10 16 19 C -0.02 -0.22 3.36 -104.63 -0.35 -0.57 16 20 C -0.09 -1.16 9.25 -39.59 -0.37 -1.52 16 21 C -0.07 -0.95 9.40 -39.58 -0.37 -1.32 16 22 C -0.20 -2.63 5.45 -104.62 -0.57 -3.20 16 23 C 0.51 6.71 3.36 36.00 0.12 6.83 16 24 F -0.18 -2.34 17.30 2.25 0.04 -2.30 16 25 F -0.18 -2.48 16.46 2.25 0.04 -2.45 16 26 F -0.18 -2.43 16.46 2.25 0.04 -2.39 16 27 C -0.07 -0.93 9.40 -39.59 -0.37 -1.30 16 28 C -0.13 -1.56 8.59 -39.59 -0.34 -1.90 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 1.08 3.19 -51.93 -0.17 0.91 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 2.25 5.94 -51.93 -0.31 1.95 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.33 6.01 7.56 -39.29 -0.30 5.72 16 36 H 0.06 0.80 8.03 -51.93 -0.42 0.38 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.90 7.57 -51.93 -0.39 0.51 16 39 H 0.09 1.88 5.46 -51.92 -0.28 1.59 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.72 8.09 -51.93 -0.42 0.30 16 42 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 43 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 44 H 0.13 1.56 7.60 -52.49 -0.40 1.16 16 45 H 0.13 1.38 7.60 -52.49 -0.40 0.98 16 46 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -26.27 367.85 -8.39 -34.66 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.56 Total: 7.65 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -2.57 Total: -19.86 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.10 Total: -36.36 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.11 Total: -7.14 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -26.27 -8.39 -34.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597087708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.502 kcal (2) G-P(sol) polarization free energy of solvation -26.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds