Wall clock time and date at job start Tue Mar 31 2020 20:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00067 * 2 1 4 4 H 1.48500 * 109.47149 * 272.88745 * 3 2 1 5 5 H 1.48502 * 109.46858 * 32.88481 * 3 2 1 6 6 H 1.48494 * 109.47186 * 152.88510 * 3 2 1 7 7 C 1.38818 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00373 * 339.43263 * 7 2 1 9 9 N 1.36934 * 119.99553 * 159.44163 * 7 2 1 10 10 C 1.46925 * 120.63072 * 152.59583 * 9 7 2 11 11 C 1.53187 * 108.89707 * 126.45574 * 10 9 7 12 12 C 1.53041 * 109.31224 * 54.56116 * 11 10 9 13 13 C 1.53033 * 109.53975 * 298.63657 * 12 11 10 14 14 H 1.08999 * 109.50174 * 301.37835 * 13 12 11 15 15 C 1.53001 * 109.50131 * 181.31606 * 13 12 11 16 16 N 1.46499 * 109.47348 * 174.99821 * 15 13 12 17 17 C 1.34779 * 119.99741 * 179.97438 * 16 15 13 18 18 O 1.21278 * 120.00412 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99928 * 179.97438 * 17 16 15 20 20 H 1.08997 * 110.73375 * 303.41198 * 19 17 16 21 21 C 1.54366 * 110.82587 * 179.97438 * 19 17 16 22 22 C 1.51218 * 105.12053 * 268.07039 * 21 19 17 23 23 C 1.38745 * 130.69168 * 162.86442 * 22 21 19 24 24 C 1.38580 * 118.55530 * 180.02562 * 23 22 21 25 25 C 1.38221 * 118.99400 * 359.97438 * 24 23 22 26 26 N 1.31691 * 120.80096 * 359.97438 * 25 24 23 27 27 C 1.32302 * 122.03092 * 359.97438 * 26 25 24 28 28 C 1.51475 * 130.14601 * 180.02562 * 27 26 25 29 29 C 1.46966 * 120.65728 * 332.40414 * 9 7 2 30 30 H 0.96995 * 120.00053 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.58666 * 6.59129 * 10 9 7 32 32 H 1.09005 * 109.58652 * 246.31394 * 10 9 7 33 33 H 1.09002 * 109.50184 * 174.51221 * 11 10 9 34 34 H 1.08994 * 109.49855 * 294.57882 * 11 10 9 35 35 H 1.09007 * 109.46060 * 58.65904 * 12 11 10 36 36 H 1.08999 * 109.46212 * 178.61190 * 12 11 10 37 37 H 1.09005 * 109.47083 * 295.00311 * 15 13 12 38 38 H 1.09003 * 109.47329 * 54.99899 * 15 13 12 39 39 H 0.96990 * 119.99943 * 0.02562 * 16 15 13 40 40 H 1.09001 * 110.30750 * 26.98086 * 21 19 17 41 41 H 1.08995 * 110.31065 * 149.15871 * 21 19 17 42 42 H 1.07999 * 120.72068 * 0.02672 * 23 22 21 43 43 H 1.08003 * 120.50193 * 180.02562 * 24 23 22 44 44 H 1.07996 * 119.60213 * 179.97438 * 25 24 23 45 45 H 1.08998 * 110.29469 * 78.25030 * 28 27 26 46 46 H 1.08997 * 110.29251 * 316.12196 * 28 27 26 47 47 H 1.08991 * 109.46786 * 113.75183 * 29 9 7 48 48 H 1.09010 * 109.58839 * 353.39893 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4366 2.0817 -1.3983 5 1 1.4795 2.6342 0.7602 6 1 3.5769 1.4233 0.6381 7 6 2.0102 -1.2022 -0.0005 8 1 1.5219 -2.1079 0.3276 9 7 3.3142 -1.2397 -0.4170 10 6 4.2350 -2.2629 0.0967 11 6 4.8794 -2.9900 -1.0876 12 6 5.5343 -1.9643 -2.0156 13 6 4.4678 -1.0098 -2.5572 14 1 3.7077 -1.5792 -3.0922 15 6 5.1182 -0.0051 -3.5105 16 7 4.0814 0.8314 -4.1201 17 6 4.4230 1.7938 -4.9997 18 8 5.5885 1.9670 -5.2869 19 6 3.3565 2.6539 -5.6273 20 1 2.6160 2.0388 -6.1385 21 6 3.9799 3.6817 -6.5957 22 6 4.2205 4.9175 -5.7581 23 6 5.0248 6.0242 -5.9888 24 6 5.0579 7.0294 -5.0354 25 6 4.2914 6.8948 -3.8931 26 7 3.5385 5.8304 -3.7077 27 6 3.4788 4.8501 -4.5942 28 6 2.6862 3.5595 -4.5712 29 6 3.8187 -0.2602 -1.3895 30 1 -0.4850 0.8400 0.0004 31 1 3.6833 -2.9773 0.7078 32 1 5.0094 -1.7882 0.6993 33 1 5.6359 -3.6838 -0.7207 34 1 4.1153 -3.5414 -1.6355 35 1 6.2812 -1.3969 -1.4603 36 1 6.0149 -2.4810 -2.8464 37 1 5.8135 0.6247 -2.9554 38 1 5.6577 -0.5416 -4.2910 39 1 3.1494 0.6931 -3.8901 40 1 4.9222 3.3043 -6.9927 41 1 3.2880 3.9041 -7.4081 42 1 5.6122 6.1007 -6.8919 43 1 5.6728 7.9049 -5.1830 44 1 4.3102 7.6720 -3.1435 45 1 1.6465 3.7496 -4.8377 46 1 2.7463 3.0965 -3.5863 47 1 4.5588 0.3800 -0.9096 48 1 2.9922 0.3468 -1.7592 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023723621.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:28 Heat of formation + Delta-G solvation = 12.216954 kcal Electronic energy + Delta-G solvation = -28772.462872 eV Core-core repulsion = 25020.139530 eV Total energy + Delta-G solvation = -3752.323343 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.10419 -39.54093 -38.13788 -36.02192 -34.83375 -33.12904 -32.73464 -31.23961 -30.61029 -29.60513 -27.95892 -26.05303 -25.31419 -23.99372 -22.57729 -21.98050 -21.82634 -20.92802 -19.93274 -19.27330 -17.49204 -16.83930 -16.81660 -16.25552 -15.93151 -15.67483 -15.13490 -14.91249 -14.75376 -14.21310 -13.94649 -13.71312 -13.54092 -13.29497 -13.28593 -13.13183 -12.98525 -12.70486 -12.50768 -12.19524 -12.12112 -11.94145 -11.75834 -11.60883 -11.46165 -11.42063 -10.79683 -10.60934 -10.53675 -10.14709 -9.98199 -9.83916 -9.72994 -9.71614 -9.47056 -9.36441 -8.94613 -8.80434 -8.63615 -7.00233 -5.98496 -3.34398 0.98609 1.18853 2.65016 3.22806 3.28439 3.50493 3.51859 3.65051 3.82438 4.26154 4.46052 4.49213 4.67946 4.73349 4.78600 4.82461 5.02460 5.11919 5.14288 5.20543 5.22666 5.29856 5.37432 5.42060 5.50715 5.59093 5.65052 5.65579 5.74093 5.79563 5.83683 5.85004 6.01758 6.01960 6.08256 6.11024 6.12080 6.28630 6.32084 6.50387 6.53696 6.57255 6.59056 6.66848 6.70504 6.94689 7.59319 7.92348 7.92812 8.27458 8.29669 8.90917 9.68538 10.07094 11.17197 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003987 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.551672 B = 7020.579733 C = 8271.136916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.146 3.854 11 C -0.134 4.134 12 C -0.101 4.101 13 C -0.119 4.119 14 H 0.080 0.920 15 C 0.126 3.874 16 N -0.722 5.722 17 C 0.520 3.480 18 O -0.542 6.542 19 C -0.113 4.113 20 H 0.120 0.880 21 C -0.063 4.063 22 C -0.139 4.139 23 C -0.063 4.063 24 C -0.176 4.176 25 C 0.100 3.900 26 N -0.477 5.477 27 C 0.120 3.880 28 C -0.068 4.068 29 C 0.134 3.866 30 H 0.263 0.737 31 H 0.062 0.938 32 H 0.021 0.979 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.406 0.594 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.156 0.844 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.025 0.975 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.104 7.171 -13.883 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.174 4.174 3 Si 0.712 3.288 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.199 1.199 7 C -0.389 4.389 8 H 0.104 0.896 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.140 4.140 14 H 0.099 0.901 15 C 0.002 3.998 16 N -0.374 5.374 17 C 0.306 3.694 18 O -0.420 6.420 19 C -0.134 4.134 20 H 0.138 0.862 21 C -0.101 4.101 22 C -0.141 4.141 23 C -0.089 4.089 24 C -0.196 4.196 25 C -0.057 4.057 26 N -0.186 5.186 27 C -0.017 4.017 28 C -0.106 4.106 29 C 0.008 3.992 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.241 0.759 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.174 0.826 45 H 0.123 0.877 46 H 0.113 0.887 47 H 0.042 0.958 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.277 7.303 -13.257 17.752 hybrid contribution 0.526 1.156 -0.495 1.363 sum 9.802 8.458 -13.752 18.888 Atomic orbital electron populations 1.69832 1.05662 1.26567 1.52902 1.25268 0.95203 0.97412 0.99537 0.87024 0.79953 0.84552 0.77248 1.21482 1.23090 1.19912 1.18941 0.84917 0.94777 1.40241 0.89642 1.44343 1.08707 1.33570 1.46269 1.20953 0.92409 0.91287 0.93351 1.21983 0.99436 0.97486 0.98418 1.21344 0.96980 0.96923 0.98655 1.21975 0.98424 0.96591 0.96988 0.90121 1.21454 0.90201 0.92419 0.95708 1.46076 1.11665 1.35248 1.44389 1.20281 0.89779 0.80206 0.79140 1.90661 1.19708 1.69530 1.62084 1.22059 0.97577 0.96589 0.97204 0.86223 1.20859 1.02634 0.90297 0.96313 1.21403 0.98040 0.96782 0.97837 1.21026 0.96460 0.92217 0.99220 1.22052 1.01622 1.00166 0.95750 1.22635 0.92249 0.94641 0.96224 1.66856 1.19636 1.01008 1.31072 1.21768 0.95235 0.94617 0.90096 1.21043 0.98964 0.90114 1.00510 1.21374 0.96991 0.91818 0.88994 0.92729 0.91932 0.96065 0.92578 0.91929 0.92378 0.92772 0.91806 0.91615 0.75864 0.88459 0.89087 0.85024 0.84628 0.82630 0.87736 0.88748 0.95757 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.06 13.97 55.49 0.78 -26.28 16 2 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 3 Si 0.88 22.36 24.35 -169.99 -4.14 18.22 16 4 H -0.29 -6.79 6.62 56.52 0.37 -6.41 16 5 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.27 -7.04 6.64 56.52 0.38 -6.67 16 7 C -0.26 -7.10 10.03 -15.06 -0.15 -7.25 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.61 -13.99 2.77 -172.29 -0.48 -14.46 16 10 C 0.15 2.81 6.51 -3.71 -0.02 2.78 16 11 C -0.13 -2.09 6.08 -26.61 -0.16 -2.25 16 12 C -0.10 -1.49 5.17 -26.69 -0.14 -1.63 16 13 C -0.12 -1.96 2.38 -90.50 -0.22 -2.17 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.13 1.92 5.07 -4.04 -0.02 1.90 16 16 N -0.72 -10.76 5.22 -60.29 -0.31 -11.08 16 17 C 0.52 7.75 7.09 -10.98 -0.08 7.67 16 18 O -0.54 -9.63 15.53 5.56 0.09 -9.55 16 19 C -0.11 -1.30 3.47 -90.31 -0.31 -1.61 16 20 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 21 C -0.06 -0.68 6.08 -26.91 -0.16 -0.84 16 22 C -0.14 -1.77 6.16 -104.21 -0.64 -2.41 16 23 C -0.06 -0.70 10.17 -39.27 -0.40 -1.10 16 24 C -0.18 -1.84 10.12 -39.46 -0.40 -2.24 16 25 C 0.10 1.24 11.18 -17.62 -0.20 1.04 16 26 N -0.48 -7.54 10.35 -9.19 -0.10 -7.64 16 27 C 0.12 1.78 7.32 -82.03 -0.60 1.18 16 28 C -0.07 -0.90 6.31 -26.75 -0.17 -1.07 16 29 C 0.13 2.79 3.29 -3.69 -0.01 2.78 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.41 5.84 7.71 -40.82 -0.31 5.53 16 40 H 0.10 1.13 7.03 -51.93 -0.37 0.76 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 44 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 45 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.09 1.48 7.80 -51.93 -0.41 1.07 16 47 H 0.02 0.53 7.07 -51.93 -0.37 0.17 16 48 H 0.07 1.57 3.73 -51.92 -0.19 1.37 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -34.08 375.56 -9.87 -43.94 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.59 Total: 5.80 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -3.77 Total: -4.62 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.11 Total: -59.46 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.08 -9.87 -43.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023723621.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.162 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds