Wall clock time and date at job start Tue Mar 31 2020 15:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00339 * 2 1 4 4 H 1.48497 * 109.47397 * 240.00332 * 3 2 1 5 5 H 1.48502 * 109.46562 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47301 * 119.99580 * 3 2 1 7 7 C 1.39947 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00391 * 196.73070 * 7 2 1 9 9 C 1.41400 * 119.99940 * 16.73055 * 7 2 1 10 10 C 1.40718 * 120.24282 * 25.00625 * 9 7 2 11 11 C 1.37619 * 119.74668 * 179.97438 * 10 9 7 12 12 C 1.38637 * 120.24494 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.74807 * 180.02562 * 12 11 10 14 14 N 1.46501 * 109.47338 * 90.00023 * 13 12 11 15 15 C 1.34776 * 120.00460 * 180.02562 * 14 13 12 16 16 O 1.21586 * 119.99512 * 354.55956 * 15 14 13 17 17 N 1.34768 * 120.00298 * 174.55920 * 15 14 13 18 18 C 1.47234 * 121.38785 * 5.72684 * 17 15 14 19 19 C 1.52252 * 107.97832 * 238.28198 * 18 17 15 20 20 C 1.53089 * 110.98705 * 302.26611 * 19 18 17 21 21 H 1.09005 * 112.62295 * 287.89945 * 20 19 18 22 22 C 1.55405 * 106.24290 * 164.40380 * 20 19 18 23 23 N 1.47605 * 106.89348 * 268.83493 * 22 20 19 24 24 C 1.48268 * 108.56600 * 358.77673 * 23 22 20 25 25 C 1.53865 * 103.95394 * 336.67508 * 24 23 22 26 26 H 1.09002 * 108.55168 * 283.28924 * 25 24 23 27 27 C 1.46705 * 121.39197 * 186.00472 * 17 15 14 28 28 C 1.38639 * 120.50227 * 0.27565 * 12 11 10 29 29 C 1.37615 * 120.24510 * 359.45038 * 28 12 11 30 30 H 0.96996 * 119.99636 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.12747 * 359.97438 * 10 9 7 32 32 H 1.07997 * 119.87638 * 180.02562 * 11 10 9 33 33 H 1.09005 * 109.47418 * 330.00056 * 13 12 11 34 34 H 1.08995 * 109.47291 * 210.00151 * 13 12 11 35 35 H 0.97000 * 119.99618 * 0.02562 * 14 13 12 36 36 H 1.09007 * 109.81110 * 357.84826 * 18 17 15 37 37 H 1.08995 * 109.81305 * 118.74622 * 18 17 15 38 38 H 1.09001 * 109.24875 * 181.81315 * 19 18 17 39 39 H 1.08991 * 109.05532 * 62.59779 * 19 18 17 40 40 H 1.09006 * 109.97433 * 28.18648 * 22 20 19 41 41 H 1.09004 * 109.98053 * 149.43219 * 22 20 19 42 42 H 1.00904 * 110.99909 * 236.51131 * 23 22 20 43 43 H 1.08995 * 110.53199 * 218.06403 * 24 23 22 44 44 H 1.09000 * 110.53200 * 95.29061 * 24 23 22 45 45 H 1.09000 * 109.12899 * 248.30462 * 27 17 15 46 46 H 1.09011 * 109.12248 * 7.39496 * 27 17 15 47 47 H 1.08000 * 119.87068 * 179.70521 * 28 12 11 48 48 H 1.08002 * 120.12622 * 180.27268 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0537 -1.2317 0.2698 9 6 1.3459 -2.4108 -0.3514 10 6 0.2082 -2.3755 -1.1789 11 6 -0.4279 -3.5485 -1.5155 12 6 0.0484 -4.7617 -1.0430 13 6 -0.6566 -6.0394 -1.4191 14 7 -0.0779 -6.5707 -2.6557 15 6 -0.5542 -7.7148 -3.1854 16 8 -1.3948 -8.3579 -2.5871 17 7 -0.0987 -8.1459 -4.3783 18 6 1.0054 -7.4609 -5.0706 19 6 0.4996 -7.0151 -6.4357 20 6 -0.0114 -8.2083 -7.2475 21 1 0.7950 -8.8507 -7.6016 22 6 -0.8508 -7.6139 -8.4125 23 7 -2.2455 -7.5297 -7.9367 24 6 -2.3068 -8.0677 -6.5565 25 6 -1.0805 -8.9924 -6.4639 26 1 -1.3040 -9.9189 -6.9928 27 6 -0.6864 -9.3137 -5.0439 28 6 1.1653 -4.8079 -0.2230 29 6 1.8206 -3.6479 0.1218 30 1 -0.4849 0.8400 -0.0004 31 1 -0.1643 -1.4314 -1.5483 32 1 -1.3010 -3.5238 -2.1507 33 1 -1.7170 -5.8381 -1.5713 34 1 -0.5367 -6.7696 -0.6188 35 1 0.6480 -6.0990 -3.0932 36 1 1.3203 -6.5912 -4.4937 37 1 1.8442 -8.1455 -5.1959 38 1 1.3116 -6.5329 -6.9800 39 1 -0.3124 -6.3011 -6.2986 40 1 -0.4834 -6.6196 -8.6666 41 1 -0.7927 -8.2661 -9.2840 42 1 -2.8678 -8.0349 -8.5497 43 1 -3.2254 -8.6352 -6.4078 44 1 -2.2327 -7.2604 -5.8278 45 1 0.0414 -10.1251 -5.0501 46 1 -1.5704 -9.6325 -4.4914 47 1 1.5249 -5.7582 0.1431 48 1 2.6931 -3.6866 0.7572 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335360421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:34 Heat of formation + Delta-G solvation = -6.926578 kcal Electronic energy + Delta-G solvation = -27957.681637 eV Core-core repulsion = 24204.528169 eV Total energy + Delta-G solvation = -3753.153468 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.79397 -39.07260 -37.67873 -35.63205 -34.74488 -33.44776 -32.20684 -31.28985 -30.01948 -29.33592 -28.15960 -26.92066 -25.00491 -23.47458 -23.26617 -21.56793 -21.06542 -20.48072 -20.08105 -18.87302 -18.20940 -17.37818 -16.83810 -16.17738 -15.68053 -15.35315 -14.96663 -14.51670 -14.42851 -14.24771 -13.90885 -13.84768 -13.67789 -13.48240 -13.15848 -12.95622 -12.83180 -12.58886 -12.45893 -12.02793 -11.92227 -11.89143 -11.56869 -11.43850 -11.17347 -11.11070 -11.04407 -10.71149 -10.61076 -10.57394 -10.54100 -9.89732 -9.68022 -9.46762 -9.22571 -8.91318 -8.70517 -8.31917 -7.56093 -7.43944 -6.84789 -4.45889 2.49866 2.87933 2.99470 3.02102 3.04135 3.17220 3.43373 3.85987 3.92806 4.11699 4.21405 4.35228 4.54582 4.62265 4.80719 4.87712 5.06547 5.12623 5.16679 5.26945 5.35516 5.44881 5.52112 5.58111 5.61641 5.64032 5.73387 5.79783 5.87991 5.91112 5.97535 6.14966 6.26447 6.32717 6.37733 6.50834 6.53178 6.87758 6.93377 6.98946 7.08468 7.13001 7.20811 7.28316 7.52394 7.75130 7.96286 8.03292 8.20270 8.25269 8.54806 8.79724 8.85542 8.87703 10.09101 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.017259 B = 0.002522 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.991315 B =11101.447922 C =11867.404616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.117 3.883 10 C -0.168 4.168 11 C -0.081 4.081 12 C -0.243 4.243 13 C 0.202 3.798 14 N -0.734 5.734 15 C 0.706 3.294 16 O -0.599 6.599 17 N -0.631 5.631 18 C 0.111 3.889 19 C -0.129 4.129 20 C -0.099 4.099 21 H 0.088 0.912 22 C 0.049 3.951 23 N -0.686 5.686 24 C 0.056 3.944 25 C -0.130 4.130 26 H 0.078 0.922 27 C 0.145 3.855 28 C -0.070 4.070 29 C -0.230 4.230 30 H 0.283 0.717 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.395 0.605 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.336 0.664 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 -13.155 -15.231 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.114 3.886 10 C -0.188 4.188 11 C -0.100 4.100 12 C -0.245 4.245 13 C 0.080 3.920 14 N -0.390 5.390 15 C 0.408 3.592 16 O -0.478 6.478 17 N -0.370 5.370 18 C -0.012 4.012 19 C -0.167 4.167 20 C -0.118 4.118 21 H 0.106 0.894 22 C -0.081 4.081 23 N -0.314 5.314 24 C -0.073 4.073 25 C -0.151 4.151 26 H 0.096 0.904 27 C 0.021 3.979 28 C -0.088 4.088 29 C -0.249 4.249 30 H 0.094 0.906 31 H 0.136 0.864 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.231 0.769 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.151 0.849 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.474 -12.725 -14.547 19.334 hybrid contribution 0.821 0.092 -0.395 0.915 sum 0.347 -12.634 -14.942 19.570 Atomic orbital electron populations 1.69809 1.07612 1.29534 1.34352 1.25948 0.94766 1.01442 0.92182 0.86338 0.80141 0.80077 0.80035 1.18755 1.20262 1.18947 1.19622 0.97784 0.91164 1.40268 0.90360 1.17667 0.90960 0.92030 0.87933 1.21324 0.99321 0.96736 1.01402 1.20570 0.98037 0.92611 0.98737 1.19002 1.02375 0.92655 1.10481 1.19803 0.95691 0.92744 0.83800 1.45866 1.40240 1.24263 1.28608 1.15922 0.81367 0.81502 0.80431 1.90873 1.37143 1.58110 1.61682 1.47191 1.37485 1.32436 1.19858 1.21494 0.89216 0.97306 0.93228 1.21840 1.01858 0.97683 0.95344 1.22321 0.97380 0.96560 0.95540 0.89378 1.23002 0.88262 1.00689 0.96111 1.61795 1.06983 1.59083 1.03530 1.22777 0.96536 0.97004 0.90965 1.22248 0.96720 0.99430 0.96704 0.90414 1.20557 0.99462 0.86822 0.91101 1.20412 0.94856 0.96471 0.97099 1.20966 1.03757 0.92934 1.07278 0.90635 0.86358 0.89399 0.92652 0.92594 0.76906 0.89923 0.91332 0.90714 0.90562 0.90440 0.93300 0.84851 0.91460 0.90067 0.92157 0.88955 0.89396 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.83 10.93 55.55 0.61 -19.22 16 2 C 0.08 1.83 5.16 -17.34 -0.09 1.74 16 3 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.76 9.06 -37.74 -0.34 -12.10 16 8 H 0.08 1.92 7.90 -52.49 -0.41 1.50 16 9 C 0.12 2.99 5.57 -106.82 -0.60 2.40 16 10 C -0.17 -4.20 8.69 -38.87 -0.34 -4.54 16 11 C -0.08 -1.80 9.67 -39.66 -0.38 -2.18 16 12 C -0.24 -5.05 5.27 -104.33 -0.55 -5.60 16 13 C 0.20 3.75 5.79 -5.19 -0.03 3.72 16 14 N -0.73 -11.99 5.47 -66.42 -0.36 -12.35 16 15 C 0.71 11.61 8.32 -86.93 -0.72 10.89 16 16 O -0.60 -11.95 15.85 5.29 0.08 -11.87 16 17 N -0.63 -7.86 2.88 -180.42 -0.52 -8.38 16 18 C 0.11 1.09 6.41 -4.02 -0.03 1.07 16 19 C -0.13 -1.14 4.77 -27.07 -0.13 -1.27 16 20 C -0.10 -0.76 3.60 -88.77 -0.32 -1.08 16 21 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 22 C 0.05 0.38 6.89 -2.16 -0.01 0.36 16 23 N -0.69 -6.26 7.41 -110.31 -0.82 -7.08 16 24 C 0.06 0.56 6.55 -2.62 -0.02 0.54 16 25 C -0.13 -1.11 2.81 -90.73 -0.25 -1.36 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 C 0.14 1.53 5.83 -5.02 -0.03 1.50 16 28 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 29 C -0.23 -5.41 9.80 -38.88 -0.38 -5.79 16 30 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 31 H 0.12 3.07 6.16 -52.48 -0.32 2.74 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 35 H 0.39 5.92 6.00 -40.82 -0.24 5.68 16 36 H 0.08 0.85 5.67 -51.93 -0.29 0.55 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.85 7.07 -51.93 -0.37 0.49 16 40 H 0.08 0.65 7.74 -51.93 -0.40 0.25 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.34 2.48 8.91 -39.29 -0.35 2.13 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.05 7.51 -51.93 -0.39 0.66 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 1.14 7.08 -51.92 -0.37 0.77 16 47 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 48 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -28.70 376.96 -12.32 -41.02 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -7.36 Total: 12.75 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -4.61 Total: -13.57 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -1.09 Total: -47.04 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.70 -12.32 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335360421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.089 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds