Wall clock time and date at job start Tue Mar 31 2020 16:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00308 * 2 1 4 4 H 1.48496 * 109.47038 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46785 * 299.99609 * 3 2 1 6 6 H 1.48497 * 109.47353 * 59.99789 * 3 2 1 7 7 C 1.37881 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00016 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.52737 * 300.08002 * 9 7 2 11 11 C 1.53042 * 109.49973 * 179.97438 * 9 7 2 12 12 C 1.53036 * 109.54110 * 178.68234 * 11 9 7 13 13 C 1.53201 * 109.31150 * 61.36777 * 12 11 9 14 14 N 1.46928 * 108.77195 * 305.36361 * 13 12 11 15 15 C 1.34779 * 120.63141 * 233.58375 * 14 13 12 16 16 O 1.21578 * 120.00129 * 185.20931 * 15 14 13 17 17 N 1.34777 * 119.99763 * 5.20816 * 15 14 13 18 18 C 1.39975 * 120.00079 * 185.22606 * 17 15 14 19 19 C 1.38899 * 120.65221 * 212.57120 * 18 17 15 20 20 N 1.31432 * 120.49506 * 179.84748 * 19 18 17 21 21 C 1.32721 * 122.51586 * 0.15771 * 20 19 18 22 22 C 1.37675 * 120.21045 * 359.90768 * 21 20 19 23 23 C 1.39006 * 120.64761 * 32.80220 * 18 17 15 24 24 C 1.50504 * 122.83836 * 180.41921 * 22 21 20 25 25 C 1.52765 * 110.56960 * 342.45842 * 24 22 21 26 26 C 1.53325 * 108.34994 * 50.84845 * 25 24 22 27 27 C 1.50748 * 117.48102 * 179.67266 * 21 20 19 28 28 C 1.46924 * 118.74038 * 53.86176 * 14 13 12 29 29 H 0.97009 * 119.99872 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.45815 * 58.66219 * 11 9 7 31 31 H 1.08999 * 109.44784 * 298.70046 * 11 9 7 32 32 H 1.08999 * 109.50038 * 301.42119 * 12 11 9 33 33 H 1.09003 * 109.50198 * 181.31719 * 12 11 9 34 34 H 1.08994 * 109.58334 * 185.57913 * 13 12 11 35 35 H 1.08999 * 109.70136 * 65.21936 * 13 12 11 36 36 H 0.97005 * 120.00070 * 5.23609 * 17 15 14 37 37 H 1.08000 * 119.75095 * 0.12133 * 19 18 17 38 38 H 1.08003 * 120.58581 * 0.04304 * 23 18 17 39 39 H 1.08994 * 109.25860 * 222.17643 * 24 22 21 40 40 H 1.09005 * 109.25386 * 102.73728 * 24 22 21 41 41 H 1.08996 * 109.69168 * 291.13848 * 25 24 22 42 42 H 1.09001 * 109.71985 * 170.57911 * 25 24 22 43 43 H 1.08997 * 109.64438 * 170.43378 * 26 25 24 44 44 H 1.09007 * 109.64358 * 49.79807 * 26 25 24 45 45 H 1.08997 * 109.25481 * 282.59514 * 27 21 20 46 46 H 1.08997 * 109.25563 * 42.03114 * 27 21 20 47 47 H 1.09009 * 109.58749 * 65.91965 * 28 14 13 48 48 H 1.08999 * 109.59192 * 186.34824 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.6225 -2.5570 0.8892 11 6 2.2448 -3.6629 0.0005 12 6 1.4808 -4.9885 0.0337 13 6 0.6055 -5.1003 -1.2187 14 7 -0.2530 -3.9109 -1.3032 15 6 -1.5894 -4.0359 -1.4257 16 8 -2.2798 -3.0488 -1.5898 17 7 -2.1604 -5.2553 -1.3664 18 6 -3.5327 -5.3978 -1.6024 19 6 -4.2662 -6.3776 -0.9457 20 7 -5.5552 -6.5068 -1.1674 21 6 -6.2149 -5.7273 -2.0152 22 6 -5.5527 -4.7353 -2.7029 23 6 -4.1872 -4.5646 -2.5021 24 6 -6.2434 -3.8125 -3.6706 25 6 -7.5936 -4.3896 -4.0920 26 6 -8.3713 -4.7714 -2.8270 27 6 -7.6909 -5.9802 -2.1882 28 6 0.3735 -2.5827 -1.2578 29 1 -0.4850 0.8401 -0.0004 30 1 2.8871 -3.5919 0.8784 31 1 2.8558 -3.6183 -0.9010 32 1 0.8505 -5.0231 0.9223 33 1 2.1894 -5.8164 0.0573 34 1 -0.0143 -5.9944 -1.1526 35 1 1.2376 -5.1584 -2.1048 36 1 -1.6203 -6.0343 -1.1600 37 1 -3.7744 -7.0355 -0.2444 38 1 -3.6457 -3.7954 -3.0327 39 1 -5.6168 -3.6826 -4.5530 40 1 -6.3989 -2.8440 -3.1952 41 1 -7.4384 -5.2748 -4.7087 42 1 -8.1530 -3.6429 -4.6556 43 1 -9.3979 -5.0257 -3.0907 44 1 -8.3658 -3.9356 -2.1272 45 1 -7.8339 -6.8521 -2.8265 46 1 -8.1394 -6.1716 -1.2134 47 1 0.9889 -2.4384 -2.1459 48 1 -0.3994 -1.8152 -1.2176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596830229.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:48 Heat of formation + Delta-G solvation = -6.587054 kcal Electronic energy + Delta-G solvation = -28342.096005 eV Core-core repulsion = 24588.957259 eV Total energy + Delta-G solvation = -3753.138746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 7.58 seconds Orbital eigenvalues (eV) -40.93459 -39.73673 -37.34293 -36.47666 -34.61955 -33.48801 -32.62301 -31.79358 -30.12384 -29.82332 -28.80782 -25.17480 -24.96961 -24.21411 -22.89300 -22.59801 -21.92110 -20.51653 -19.66020 -19.06918 -17.96690 -16.88498 -16.39328 -16.23400 -16.11581 -15.18287 -14.82280 -14.73768 -14.35955 -14.16034 -14.01088 -13.86912 -13.72861 -13.44765 -12.94891 -12.84705 -12.81692 -12.65757 -12.50907 -12.30914 -12.03014 -11.91529 -11.12634 -11.06354 -11.01111 -10.96406 -10.74306 -10.59406 -10.49720 -10.41069 -10.27590 -9.96166 -9.77700 -9.39685 -9.18132 -9.07319 -8.96911 -8.48194 -8.10805 -7.72060 -6.03410 -4.12253 1.16163 1.40491 2.91767 3.28202 3.36596 3.39297 3.50276 3.92154 4.09867 4.30555 4.40731 4.58207 4.74129 4.76067 4.90747 4.96317 5.12170 5.16313 5.26894 5.38362 5.39417 5.40227 5.47962 5.50603 5.58968 5.62787 5.77247 5.84421 5.87627 5.90058 5.97091 6.06214 6.14531 6.19702 6.23337 6.32307 6.49256 6.52797 6.57305 6.71711 6.89693 6.93714 6.97765 7.19815 7.31789 7.65908 7.83629 7.97797 8.05189 8.32049 8.34975 8.90772 8.98190 9.53724 11.01899 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016149 B = 0.002969 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.412448 B = 9428.203807 C =10732.420736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.039 3.961 10 H 0.029 0.971 11 C -0.110 4.110 12 C -0.134 4.134 13 C 0.113 3.887 14 N -0.615 5.615 15 C 0.698 3.302 16 O -0.566 6.566 17 N -0.690 5.690 18 C 0.130 3.870 19 C 0.070 3.930 20 N -0.469 5.469 21 C 0.099 3.901 22 C -0.103 4.103 23 C -0.084 4.084 24 C -0.077 4.077 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.061 4.061 28 C 0.128 3.872 29 H 0.263 0.737 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.404 0.596 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.043 0.957 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.500 -14.285 -6.666 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.173 4.173 13 C -0.011 4.011 14 N -0.351 5.351 15 C 0.400 3.600 16 O -0.442 6.442 17 N -0.340 5.340 18 C 0.031 3.969 19 C -0.093 4.093 20 N -0.177 5.177 21 C -0.038 4.038 22 C -0.105 4.105 23 C -0.113 4.113 24 C -0.115 4.115 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.098 4.098 28 C 0.008 3.992 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.242 0.758 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.061 0.939 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.500 -14.015 -6.349 19.209 hybrid contribution 1.530 1.114 -0.142 1.898 sum -9.970 -12.900 -6.491 17.549 Atomic orbital electron populations 1.69897 1.05746 1.26791 1.49245 1.25063 0.94884 0.99317 0.94786 0.86533 0.80036 0.83768 0.77662 1.19783 1.20941 1.21005 1.21101 0.92947 0.90037 1.51881 0.92260 1.19076 0.92630 0.92344 0.93958 0.95270 1.21622 0.98561 0.93932 1.00701 1.21963 0.98684 0.99348 0.97264 1.21575 0.93440 0.87120 0.99007 1.47878 1.03007 1.09430 1.74762 1.15962 0.82894 0.82569 0.78567 1.90937 1.61339 1.36091 1.55796 1.42924 1.06627 1.09793 1.74692 1.18558 0.84217 0.98236 0.95853 1.22360 0.89505 0.98711 0.98735 1.67413 1.08610 1.25877 1.15826 1.20854 0.96192 0.92598 0.94130 1.20338 0.93631 0.97401 0.99131 1.21697 0.94031 0.99407 0.96145 1.20421 0.95943 0.97668 0.97481 1.21566 0.95514 1.01100 0.97493 1.21583 0.98817 0.98072 0.97358 1.20243 0.89132 0.98538 1.01924 1.22378 0.98363 0.80023 0.98481 0.92673 0.92899 0.93087 0.92075 0.92085 0.92189 0.91625 0.75802 0.82871 0.83449 0.90542 0.90092 0.91610 0.91235 0.91096 0.91376 0.90401 0.90150 0.93860 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.39 11.41 55.43 0.63 -24.76 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -13.84 8.56 -34.44 -0.29 -14.14 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.94 2.26 -91.43 -0.21 0.74 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.11 5.10 -26.69 -0.14 -2.24 16 12 C -0.13 -2.02 6.08 -26.61 -0.16 -2.18 16 13 C 0.11 1.63 6.43 -3.70 -0.02 1.60 16 14 N -0.61 -11.87 2.97 -178.22 -0.53 -12.40 16 15 C 0.70 13.83 8.07 -86.92 -0.70 13.13 16 16 O -0.57 -13.58 13.48 5.30 0.07 -13.50 16 17 N -0.69 -10.49 5.26 -14.18 -0.07 -10.56 16 18 C 0.13 2.00 6.31 -83.61 -0.53 1.47 16 19 C 0.07 0.96 11.14 -17.48 -0.19 0.77 16 20 N -0.47 -6.74 10.17 -9.34 -0.09 -6.84 16 21 C 0.10 1.32 6.62 -82.39 -0.55 0.77 16 22 C -0.10 -1.42 5.74 -104.61 -0.60 -2.02 16 23 C -0.08 -1.35 8.36 -38.99 -0.33 -1.67 16 24 C -0.08 -0.86 5.68 -28.10 -0.16 -1.02 16 25 C -0.12 -1.02 5.98 -26.68 -0.16 -1.18 16 26 C -0.12 -1.01 5.97 -26.71 -0.16 -1.17 16 27 C -0.06 -0.61 5.91 -28.01 -0.17 -0.77 16 28 C 0.13 3.01 5.41 -3.48 -0.02 2.99 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.66 5.58 -51.93 -0.29 0.37 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.40 4.74 6.31 -40.82 -0.26 4.48 16 37 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.15 2.61 6.48 -52.48 -0.34 2.27 16 39 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 48 H 0.12 3.43 5.18 -51.93 -0.27 3.16 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -31.91 372.75 -11.33 -43.24 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.46 Total: 6.50 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -4.48 Total: -3.31 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.07 Total: -54.56 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.50 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.91 -11.33 -43.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596830229.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.655 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.58 seconds