Wall clock time and date at job start Tue Mar 31 2020 15:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99829 * 2 1 4 4 H 1.48493 * 109.47323 * 272.94041 * 3 2 1 5 5 H 1.48507 * 109.47311 * 32.94180 * 3 2 1 6 6 H 1.48500 * 109.47208 * 152.93937 * 3 2 1 7 7 C 1.38810 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00480 * 339.34956 * 7 2 1 9 9 N 1.36939 * 119.99655 * 159.34512 * 7 2 1 10 10 C 1.46920 * 120.63436 * 332.63686 * 9 7 2 11 11 C 1.53198 * 108.77858 * 233.58790 * 10 9 7 12 12 C 1.53047 * 109.30784 * 305.36154 * 11 10 9 13 13 N 1.46497 * 109.45883 * 181.38321 * 12 11 10 14 14 C 1.34774 * 119.99914 * 154.99941 * 13 12 11 15 15 O 1.21589 * 120.00060 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00127 * 179.97438 * 14 13 12 17 17 C 1.47588 * 134.49224 * 0.02562 * 16 14 13 18 18 C 1.53950 * 86.11737 * 204.63538 * 17 16 14 19 19 C 1.47584 * 134.49773 * 179.97438 * 16 14 13 20 20 H 1.08996 * 113.87274 * 269.68114 * 19 16 14 21 21 C 1.50698 * 113.76684 * 41.06146 * 19 16 14 22 22 C 1.38238 * 120.00075 * 35.86399 * 21 19 16 23 23 C 1.38235 * 120.00250 * 180.02562 * 22 21 19 24 24 C 1.38237 * 119.99842 * 0.07029 * 23 22 21 25 25 C 1.38237 * 120.00045 * 0.02562 * 24 23 22 26 26 C 1.38231 * 120.00106 * 216.00409 * 21 19 16 27 27 C 1.53046 * 109.53595 * 61.36635 * 12 11 10 28 28 C 1.46925 * 120.62809 * 152.61112 * 9 7 2 29 29 H 0.96996 * 119.99837 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58984 * 113.79524 * 10 9 7 31 31 H 1.09008 * 109.70063 * 353.44110 * 10 9 7 32 32 H 1.08999 * 109.50100 * 185.41138 * 11 10 9 33 33 H 1.08995 * 109.52386 * 65.32739 * 11 10 9 34 34 H 1.09001 * 109.45884 * 301.35994 * 12 11 10 35 35 H 0.97000 * 120.00096 * 334.99983 * 13 12 11 36 36 H 1.08997 * 113.77082 * 90.33246 * 17 16 14 37 37 H 1.08998 * 113.86731 * 318.94963 * 17 16 14 38 38 H 1.09001 * 113.74112 * 222.04605 * 18 17 16 39 39 H 1.09002 * 113.73726 * 90.73757 * 18 17 16 40 40 H 1.08004 * 119.99941 * 0.11308 * 22 21 19 41 41 H 1.07993 * 120.00364 * 180.34904 * 23 22 21 42 42 H 1.07995 * 120.00209 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.00009 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.00088 * 359.97438 * 26 21 19 45 45 H 1.08993 * 109.50132 * 58.58232 * 27 12 11 46 46 H 1.09002 * 109.49586 * 178.68416 * 27 12 11 47 47 H 1.09005 * 109.59135 * 246.19928 * 28 9 7 48 48 H 1.08999 * 109.58697 * 6.62875 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4355 2.0824 -1.3981 5 1 1.4801 2.6340 0.7614 6 1 3.5775 1.4231 0.6369 7 6 2.0103 -1.2021 0.0005 8 1 1.5224 -2.1072 0.3308 9 7 3.3137 -1.2403 -0.4178 10 6 3.8174 -0.2594 -1.3886 11 6 4.4623 -1.0095 -2.5583 12 6 5.5291 -1.9656 -2.0197 13 7 6.1710 -2.6607 -3.1382 14 6 7.4214 -3.1449 -3.0023 15 8 8.0166 -3.0052 -1.9513 16 7 8.0118 -3.7848 -4.0311 17 6 7.6034 -4.1275 -5.4073 18 6 8.6307 -5.2704 -5.3159 19 6 9.3266 -4.4237 -4.2343 20 1 10.0884 -3.7500 -4.6264 21 6 9.8027 -5.2237 -3.0493 22 6 8.8948 -5.9288 -2.2815 23 6 9.3315 -6.6623 -1.1942 24 6 10.6760 -6.6895 -0.8738 25 6 11.5836 -5.9828 -1.6404 26 6 11.1470 -5.2502 -2.7284 27 6 4.8754 -2.9907 -1.0901 28 6 4.2351 -2.2628 0.0962 29 1 -0.4850 0.8400 0.0004 30 1 4.5598 0.3798 -0.9106 31 1 2.9923 0.3508 -1.7563 32 1 4.9248 -0.2944 -3.2386 33 1 3.7001 -1.5779 -3.0912 34 1 6.2781 -1.3993 -1.4661 35 1 5.6961 -2.7725 -3.9765 36 1 7.8583 -3.3655 -6.1438 37 1 6.5717 -4.4696 -5.4889 38 1 9.2245 -5.4001 -6.2207 39 1 8.2145 -6.2056 -4.9414 40 1 7.8445 -5.9078 -2.5320 41 1 8.6230 -7.2177 -0.5977 42 1 11.0171 -7.2621 -0.0241 43 1 12.6339 -6.0037 -1.3899 44 1 11.8562 -4.6978 -3.3271 45 1 4.1089 -3.5404 -1.6362 46 1 5.6319 -3.6855 -0.7253 47 1 5.0116 -1.7871 0.6953 48 1 3.6841 -2.9766 0.7086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609337021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:55 Heat of formation + Delta-G solvation = 63.486561 kcal Electronic energy + Delta-G solvation = -28432.528126 eV Core-core repulsion = 24682.428000 eV Total energy + Delta-G solvation = -3750.100126 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.90340 -39.18208 -38.23999 -37.16222 -34.43326 -32.30259 -31.57526 -30.97411 -30.46988 -30.31719 -28.89934 -26.12275 -24.83337 -23.01024 -22.83616 -22.34594 -21.99153 -21.25912 -19.75520 -19.25255 -18.07280 -17.25759 -16.77036 -16.33509 -15.93698 -15.34182 -14.98892 -14.75222 -14.43983 -14.22226 -14.14827 -13.96243 -13.72593 -13.50087 -13.11711 -13.07169 -12.89517 -12.71270 -12.48174 -12.37489 -12.03490 -11.93963 -11.78911 -11.71998 -11.17575 -10.95582 -10.90208 -10.79686 -10.51616 -10.25015 -10.13476 -9.92678 -9.73100 -9.45010 -9.03311 -8.96052 -8.81765 -8.61806 -8.53347 -6.97415 -5.94123 -3.29574 1.14663 1.33195 2.47364 3.32138 3.33733 3.49944 3.53998 3.64146 3.94356 4.11362 4.47189 4.53986 4.64055 4.74866 4.85578 4.92744 4.98021 5.00104 5.07105 5.12766 5.20189 5.35091 5.35775 5.38502 5.39967 5.44692 5.55666 5.72131 5.77844 5.85204 5.86131 5.93891 6.07278 6.16712 6.20649 6.32294 6.37402 6.41284 6.46146 6.50454 6.60386 6.68054 6.68453 6.86778 6.88964 6.94221 7.24323 7.97398 8.11176 8.34031 8.75811 8.95181 9.73086 10.11153 11.21946 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.002808 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.069063 B = 9969.103546 C =10585.215983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.139 4.139 12 C 0.170 3.830 13 N -0.738 5.738 14 C 0.724 3.276 15 O -0.578 6.578 16 N -0.662 5.662 17 C 0.099 3.901 18 C -0.143 4.143 19 C 0.196 3.804 20 H 0.096 0.904 21 C -0.086 4.086 22 C -0.078 4.078 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.106 4.106 27 C -0.140 4.140 28 C 0.151 3.849 29 H 0.262 0.738 30 H 0.027 0.973 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.390 0.610 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.025 0.975 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.576 -13.029 -13.248 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.004 3.996 11 C -0.179 4.179 12 C 0.066 3.934 13 N -0.391 5.391 14 C 0.427 3.573 15 O -0.455 6.455 16 N -0.403 5.403 17 C -0.025 4.025 18 C -0.181 4.181 19 C 0.092 3.908 20 H 0.114 0.886 21 C -0.087 4.087 22 C -0.096 4.096 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.125 4.125 27 C -0.181 4.181 28 C 0.025 3.975 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.223 0.777 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.043 0.957 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.720 -12.694 -12.232 27.973 hybrid contribution 0.108 1.101 -0.403 1.177 sum 21.827 -11.594 -12.635 27.758 Atomic orbital electron populations 1.69839 1.05720 1.26527 1.53143 1.25282 0.95234 0.97552 0.99567 0.86974 0.80168 0.84694 0.77007 1.21652 1.23126 1.19457 1.18936 0.84924 0.94794 1.39974 0.89643 1.44407 1.08710 1.33402 1.46484 1.21294 0.97239 0.92026 0.89057 1.22345 0.97454 0.98388 0.99731 1.20841 0.93849 0.92596 0.86114 1.45435 1.14660 1.61500 1.17513 1.15545 0.81469 0.77526 0.82781 1.90950 1.64875 1.62926 1.26704 1.49369 1.17567 1.61153 1.12233 1.23094 1.00115 0.95578 0.83671 1.23664 0.97590 0.98118 0.98691 1.21466 0.86332 0.91081 0.91915 0.88604 1.19670 0.93666 0.98136 0.97257 1.20836 0.99100 0.95157 0.94510 1.21132 0.95860 0.99623 0.97314 1.21148 0.93480 0.99437 0.99442 1.21058 0.99514 0.98035 0.95738 1.20930 0.94904 0.99175 0.97452 1.22389 0.99265 0.98099 0.98314 1.20900 0.92269 0.91293 0.93080 0.92789 0.95500 0.90540 0.92367 0.91254 0.90076 0.77682 0.89863 0.90090 0.89436 0.88690 0.86658 0.86185 0.86267 0.86196 0.86236 0.92058 0.92296 0.95699 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.96 13.97 55.49 0.78 -27.18 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.55 24.35 -169.99 -4.14 18.41 16 4 H -0.29 -7.06 6.62 56.52 0.37 -6.69 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.27 -6.85 6.64 56.52 0.38 -6.48 16 7 C -0.26 -7.26 10.04 -15.06 -0.15 -7.41 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.61 -14.62 2.77 -172.31 -0.48 -15.10 16 10 C 0.13 2.86 4.20 -3.71 -0.02 2.84 16 11 C -0.14 -2.43 5.55 -26.60 -0.15 -2.58 16 12 C 0.17 2.90 2.41 -67.88 -0.16 2.73 16 13 N -0.74 -10.48 5.08 -58.63 -0.30 -10.78 16 14 C 0.72 11.03 8.07 -86.92 -0.70 10.33 16 15 O -0.58 -11.25 15.68 5.29 0.08 -11.17 16 16 N -0.66 -7.36 3.00 -178.18 -0.53 -7.90 16 17 C 0.10 0.66 8.44 -2.97 -0.03 0.64 16 18 C -0.14 -0.86 7.76 -25.79 -0.20 -1.06 16 19 C 0.20 1.81 4.46 -68.00 -0.30 1.51 16 20 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 21 C -0.09 -0.96 4.83 -104.63 -0.51 -1.46 16 22 C -0.08 -0.94 8.08 -39.58 -0.32 -1.26 16 23 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 26 C -0.11 -1.07 9.71 -39.58 -0.38 -1.45 16 27 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 28 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 31 H 0.08 1.81 4.50 -51.92 -0.23 1.58 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 35 H 0.39 4.55 8.21 -40.82 -0.34 4.21 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.61 7.77 -51.93 -0.40 0.21 16 40 H 0.12 1.46 7.60 -52.48 -0.40 1.06 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -34.84 378.79 -10.91 -45.74 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.65 Total: 3.43 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -4.38 Total: -1.17 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.53 Total: -60.95 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.14 Total: 18.41 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.84 -10.91 -45.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.231 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds