Wall clock time and date at job start Tue Mar 31 2020 17:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99953 * 2 1 4 4 H 1.48499 * 109.46915 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46977 * 299.99858 * 3 2 1 6 6 H 1.48495 * 109.47277 * 59.99995 * 3 2 1 7 7 C 1.38808 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00233 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00287 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99968 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.07879 * 34.76213 * 10 9 7 12 12 C 1.53872 * 109.92340 * 273.54258 * 10 9 7 13 13 C 1.54135 * 106.54022 * 242.38093 * 12 10 9 14 14 C 1.54845 * 104.63131 * 335.47078 * 13 12 10 15 15 H 1.09003 * 113.73682 * 272.72418 * 14 13 12 16 16 C 1.54207 * 108.04805 * 145.45446 * 14 13 12 17 17 N 1.46907 * 107.63700 * 272.99116 * 16 14 13 18 18 C 1.34771 * 125.61692 * 181.49752 * 17 16 14 19 19 O 1.21284 * 120.00038 * 180.02562 * 18 17 16 20 20 C 1.50697 * 120.00170 * 0.02562 * 18 17 16 21 21 C 1.53001 * 109.47351 * 180.02562 * 20 18 17 22 22 C 1.50697 * 109.47351 * 179.97438 * 21 20 18 23 23 C 1.38236 * 119.61741 * 124.72738 * 22 21 20 24 24 C 1.38623 * 119.15871 * 179.71330 * 23 22 21 25 25 C 1.38673 * 118.42349 * 0.55009 * 24 23 22 26 26 C 1.38178 * 119.16217 * 359.73152 * 25 24 23 27 27 N 1.31847 * 119.62234 * 305.00094 * 22 21 20 28 28 C 1.47342 * 108.76346 * 1.52222 * 17 16 14 29 29 C 1.53836 * 109.96247 * 156.02890 * 10 9 7 30 30 H 1.08994 * 113.55153 * 264.77918 * 29 10 9 31 31 H 0.97001 * 119.99741 * 359.97438 * 1 2 3 32 32 H 0.96992 * 120.00041 * 359.97438 * 9 7 2 33 33 H 1.09002 * 110.05498 * 123.09348 * 12 10 9 34 34 H 1.09000 * 110.04554 * 1.66151 * 12 10 9 35 35 H 1.08996 * 110.40270 * 94.25556 * 13 12 10 36 36 H 1.08998 * 110.40468 * 216.68097 * 13 12 10 37 37 H 1.09002 * 109.82242 * 32.51972 * 16 14 13 38 38 H 1.09003 * 109.82039 * 153.38192 * 16 14 13 39 39 H 1.08998 * 109.47170 * 300.00184 * 20 18 17 40 40 H 1.08998 * 109.47123 * 59.99913 * 20 18 17 41 41 H 1.09007 * 109.46863 * 300.00402 * 21 20 18 42 42 H 1.08998 * 109.47155 * 59.99838 * 21 20 18 43 43 H 1.07998 * 120.41564 * 359.97438 * 23 22 21 44 44 H 1.08006 * 120.78820 * 180.25942 * 24 23 22 45 45 H 1.08004 * 120.41830 * 179.71572 * 25 24 23 46 46 H 1.07999 * 119.62026 * 180.02562 * 26 25 24 47 47 H 1.09001 * 110.30000 * 95.01306 * 28 17 16 48 48 H 1.08998 * 110.30040 * 217.06314 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9735 -3.5603 0.5843 12 6 2.3976 -4.0662 -1.4433 13 6 1.6723 -5.4012 -1.7030 14 6 1.4822 -6.0229 -0.2976 15 1 2.3294 -6.6228 0.0350 16 6 0.1414 -6.7845 -0.2895 17 7 -0.9129 -5.8257 0.0675 18 6 -2.2218 -6.1145 0.2074 19 8 -3.0073 -5.2399 0.5058 20 6 -2.7095 -7.5242 -0.0068 21 6 -4.2229 -7.5790 0.2113 22 6 -4.7107 -8.9886 -0.0035 23 6 -5.4266 -9.6233 0.9942 24 6 -5.8759 -10.9178 0.7841 25 6 -5.5772 -11.5325 -0.4225 26 6 -4.8515 -10.8372 -1.3709 27 7 -4.4451 -9.6042 -1.1388 28 6 -0.3035 -4.4962 0.2468 29 6 1.1764 -4.7722 0.5880 30 1 1.3442 -4.9457 1.6509 31 1 -0.4850 0.8401 0.0004 32 1 0.3556 -2.3881 0.0005 33 1 3.4741 -4.1986 -1.5509 34 1 2.0432 -3.3066 -2.1402 35 1 0.7054 -5.2231 -2.1736 36 1 2.2854 -6.0517 -2.3266 37 1 -0.0548 -7.1982 -1.2786 38 1 0.1770 -7.5876 0.4466 39 1 -2.4780 -7.8380 -1.0247 40 1 -2.2158 -8.1909 0.7001 41 1 -4.4549 -7.2650 1.2291 42 1 -4.7164 -6.9124 -0.4959 43 1 -5.6369 -9.1156 1.9239 44 1 -6.4412 -11.4370 1.5440 45 1 -5.9073 -12.5420 -0.6184 46 1 -4.6150 -11.3087 -2.3133 47 1 -0.3778 -3.9188 -0.6747 48 1 -0.7890 -3.9650 1.0654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026326005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:40 Heat of formation + Delta-G solvation = 11.399353 kcal Electronic energy + Delta-G solvation = -27693.579929 eV Core-core repulsion = 23941.221132 eV Total energy + Delta-G solvation = -3752.358796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.61461 -40.27912 -38.47009 -35.06395 -34.28085 -33.21981 -32.64170 -30.94807 -30.60951 -29.00850 -28.36083 -25.95639 -24.94480 -23.81143 -23.39811 -22.92404 -21.61217 -19.70071 -18.99001 -18.82482 -17.47413 -17.17989 -16.83581 -16.52202 -15.92480 -15.66043 -15.19067 -15.15296 -14.84546 -14.30675 -13.88528 -13.78121 -13.60281 -13.32249 -13.22870 -12.96433 -12.72831 -12.48011 -12.31861 -12.26144 -12.02010 -11.77190 -11.54568 -11.27225 -11.24766 -10.80912 -10.64658 -10.55250 -10.39963 -10.25937 -10.18661 -10.09246 -9.84693 -9.71589 -9.58942 -9.55483 -9.22680 -8.88175 -8.36128 -6.93217 -5.73227 -3.03043 0.79512 0.96826 2.84698 3.16547 3.45359 3.50586 3.51042 3.53294 4.00018 4.35784 4.51468 4.54016 4.60955 4.70128 4.75541 4.79541 4.85595 4.96353 5.06732 5.10650 5.29558 5.40260 5.43115 5.48712 5.50617 5.54516 5.60937 5.64321 5.69252 5.79719 5.86012 5.91629 5.96428 5.97888 5.98759 6.03067 6.09865 6.30797 6.40287 6.40596 6.54676 6.55302 6.58080 6.70557 6.82398 7.12756 7.71284 7.74134 7.76401 8.38042 8.45137 9.55755 10.13202 10.46499 11.49045 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.002327 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.294428 B =12028.652532 C =12885.138337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.053 0.947 12 C -0.146 4.146 13 C -0.116 4.116 14 C -0.103 4.103 15 H 0.102 0.898 16 C 0.107 3.893 17 N -0.616 5.616 18 C 0.523 3.477 19 O -0.539 6.539 20 C -0.124 4.124 21 C -0.056 4.056 22 C 0.135 3.865 23 C -0.169 4.169 24 C -0.074 4.074 25 C -0.183 4.183 26 C 0.102 3.898 27 N -0.482 5.482 28 C 0.116 3.884 29 C -0.104 4.104 30 H 0.087 0.913 31 H 0.255 0.745 32 H 0.386 0.614 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.155 0.845 47 H 0.081 0.919 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -26.303 -0.117 27.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.368 5.368 10 C 0.073 3.927 11 H 0.071 0.929 12 C -0.186 4.186 13 C -0.153 4.153 14 C -0.122 4.122 15 H 0.120 0.880 16 C -0.017 4.017 17 N -0.350 5.350 18 C 0.312 3.688 19 O -0.417 6.417 20 C -0.164 4.164 21 C -0.094 4.094 22 C -0.002 4.002 23 C -0.189 4.189 24 C -0.100 4.100 25 C -0.203 4.203 26 C -0.055 4.055 27 N -0.191 5.191 28 C -0.006 4.006 29 C -0.124 4.124 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.223 0.777 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.172 0.828 47 H 0.099 0.901 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.254 -25.236 -0.583 26.006 hybrid contribution -0.309 0.322 0.557 0.713 sum -6.563 -24.914 -0.027 25.764 Atomic orbital electron populations 1.69677 1.05059 1.25607 1.57465 1.24762 0.95492 0.97702 1.02995 0.86142 0.78738 0.84288 0.77149 1.20597 1.21942 1.21922 1.19281 0.91016 0.84123 1.42782 0.91119 1.42720 1.05966 0.99675 1.88477 1.20672 0.93806 0.85550 0.92716 0.92892 1.22978 0.98763 0.96078 1.00799 1.22418 1.00718 0.97136 0.95066 1.23160 0.95659 0.96141 0.97239 0.88019 1.22004 0.87740 0.91996 0.99937 1.48561 1.06319 1.11228 1.68890 1.20267 0.80672 0.90718 0.77158 1.90740 1.53611 1.49359 1.47959 1.21510 0.96063 0.94164 1.04702 1.20316 0.94561 0.90391 1.04118 1.21354 0.93462 0.96301 0.89118 1.22050 1.00189 0.95900 1.00774 1.21602 0.96791 0.94593 0.97001 1.22135 1.01288 1.01643 0.95229 1.22778 0.93591 0.90184 0.98959 1.67499 1.20223 1.09988 1.21382 1.22173 0.91999 0.83588 1.02823 1.23222 0.94784 0.95221 0.99185 0.89500 0.93488 0.77712 0.93048 0.90783 0.91760 0.92397 0.91498 0.92043 0.88064 0.89433 0.89382 0.88909 0.84616 0.84889 0.84932 0.82763 0.90054 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.79 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -17.87 4.80 -52.56 -0.25 -18.12 16 10 C 0.18 3.50 3.24 -67.04 -0.22 3.28 16 11 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 12 C -0.15 -2.47 6.56 -25.68 -0.17 -2.64 16 13 C -0.12 -1.58 5.58 -25.17 -0.14 -1.72 16 14 C -0.10 -1.27 4.25 -87.26 -0.37 -1.64 16 15 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 16 C 0.11 1.23 5.71 -3.19 -0.02 1.22 16 17 N -0.62 -9.34 3.32 -171.10 -0.57 -9.91 16 18 C 0.52 8.20 7.85 -10.99 -0.09 8.11 16 19 O -0.54 -10.71 16.23 5.55 0.09 -10.62 16 20 C -0.12 -1.42 4.75 -27.88 -0.13 -1.55 16 21 C -0.06 -0.62 4.90 -27.88 -0.14 -0.76 16 22 C 0.14 1.39 6.18 -82.59 -0.51 0.88 16 23 C -0.17 -1.42 9.71 -39.44 -0.38 -1.80 16 24 C -0.07 -0.51 10.18 -39.28 -0.40 -0.91 16 25 C -0.18 -1.22 10.11 -39.44 -0.40 -1.62 16 26 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 27 N -0.48 -5.17 9.88 -9.47 -0.09 -5.26 16 28 C 0.12 2.10 4.40 -2.87 -0.01 2.09 16 29 C -0.10 -1.67 4.03 -87.72 -0.35 -2.02 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.39 10.19 5.33 -40.82 -0.22 9.98 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.47 7.91 -51.93 -0.41 1.06 16 35 H 0.06 0.96 7.27 -51.93 -0.38 0.58 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.70 7.83 -51.93 -0.41 0.29 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.12 7.94 -51.93 -0.41 0.71 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 0.94 7.83 -51.93 -0.41 0.54 16 42 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 43 H 0.14 0.90 7.95 -52.49 -0.42 0.49 16 44 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 45 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 46 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.08 1.68 6.30 -51.93 -0.33 1.36 16 48 H 0.08 1.66 8.02 -51.93 -0.42 1.24 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -33.81 383.98 -10.69 -44.50 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -7.58 Total: 9.57 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -3.77 Total: -5.69 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -0.19 Total: -61.08 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.81 -10.69 -44.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026326005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.899 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds