Wall clock time and date at job start Tue Mar 31 2020 16:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99800 * 2 1 4 4 H 1.48499 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47055 * 299.99963 * 3 2 1 6 6 H 1.48499 * 109.46908 * 60.00065 * 3 2 1 7 7 C 1.38816 * 120.00363 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99791 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99607 * 359.97438 * 7 2 1 10 10 C 1.48156 * 126.40950 * 0.02626 * 9 7 2 11 11 C 1.55286 * 107.04725 * 175.04122 * 10 9 7 12 12 C 1.53748 * 101.84067 * 337.52134 * 11 10 9 13 13 H 1.08997 * 111.30286 * 280.15246 * 12 11 10 14 14 C 1.52241 * 114.74548 * 152.75681 * 12 11 10 15 15 N 1.47718 * 106.36318 * 189.47378 * 14 12 11 16 16 C 1.34774 * 119.68593 * 232.03677 * 15 14 12 17 17 O 1.21284 * 119.99568 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00149 * 180.02562 * 16 15 14 19 19 C 1.53000 * 109.46843 * 179.97438 * 18 16 15 20 20 C 1.50708 * 109.46854 * 180.02562 * 19 18 16 21 21 C 1.38670 * 120.42129 * 89.99763 * 20 19 18 22 22 C 1.38625 * 118.42146 * 179.97438 * 21 20 19 23 23 C 1.38225 * 119.16232 * 0.02562 * 22 21 20 24 24 N 1.31854 * 120.76100 * 359.97438 * 23 22 21 25 25 C 1.31887 * 121.72830 * 359.71279 * 24 23 22 26 26 C 1.46599 * 120.63312 * 52.05591 * 15 14 12 27 27 C 1.53952 * 110.54842 * 312.19876 * 26 15 14 28 28 C 1.46153 * 125.88188 * 179.03618 * 9 7 2 29 29 H 1.09002 * 108.63624 * 93.71789 * 28 9 7 30 30 H 0.96998 * 120.00214 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.92062 * 55.69159 * 10 9 7 32 32 H 1.09002 * 109.91787 * 294.38989 * 10 9 7 33 33 H 1.08996 * 110.95673 * 219.37985 * 11 10 9 34 34 H 1.09001 * 110.95432 * 95.65423 * 11 10 9 35 35 H 1.09003 * 110.07059 * 70.26272 * 14 12 11 36 36 H 1.08994 * 110.06894 * 308.68593 * 14 12 11 37 37 H 1.08995 * 109.46853 * 299.99279 * 18 16 15 38 38 H 1.08998 * 109.47055 * 59.99558 * 18 16 15 39 39 H 1.09003 * 109.47201 * 299.99418 * 19 18 16 40 40 H 1.08998 * 109.47573 * 59.99977 * 19 18 16 41 41 H 1.08004 * 120.78858 * 0.02868 * 21 20 19 42 42 H 1.08000 * 120.41862 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.61692 * 179.97438 * 23 22 21 44 44 H 1.07997 * 119.62216 * 180.31092 * 25 24 23 45 45 H 1.09002 * 109.25546 * 72.46378 * 26 15 14 46 46 H 1.08998 * 109.25287 * 191.93471 * 26 15 14 47 47 H 1.08997 * 109.88274 * 170.49496 * 27 26 15 48 48 H 1.09005 * 109.88128 * 291.57238 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1467 -2.5534 -0.0006 11 6 -0.4340 -4.0740 -0.1289 12 6 0.8685 -4.5887 -0.7633 13 1 0.8851 -4.4053 -1.8376 14 6 1.2011 -6.0403 -0.4472 15 7 2.5743 -6.2697 -0.9412 16 6 2.8244 -7.3122 -1.7579 17 8 1.9240 -8.0564 -2.0842 18 6 4.2227 -7.5532 -2.2655 19 6 4.2322 -8.7904 -3.1656 20 6 5.6308 -9.0318 -3.6727 21 6 6.5080 -9.8339 -2.9585 22 6 7.7843 -10.0284 -3.4635 23 6 8.1378 -9.4201 -4.6533 24 7 7.2772 -8.6636 -5.3057 25 6 6.0531 -8.4615 -4.8584 26 6 3.6677 -5.3745 -0.5512 27 6 3.2501 -3.9031 -0.7269 28 6 1.9227 -3.7219 -0.0210 29 1 2.0193 -4.0760 1.0054 30 1 -0.4850 0.8400 0.0004 31 1 -0.5802 -2.0208 -0.8470 32 1 -0.5629 -2.1743 0.9328 33 1 -1.2854 -4.2559 -0.7845 34 1 -0.5949 -4.5244 0.8506 35 1 0.5039 -6.7038 -0.9589 36 1 1.1578 -6.2082 0.6288 37 1 4.5567 -6.6863 -2.8355 38 1 4.8931 -7.7133 -1.4212 39 1 3.8984 -9.6573 -2.5952 40 1 3.5617 -8.6308 -4.0099 41 1 6.2038 -10.2969 -2.0314 42 1 8.4937 -10.6466 -2.9335 43 1 9.1303 -9.5663 -5.0532 44 1 5.3743 -7.8394 -5.4229 45 1 3.9235 -5.5532 0.4932 46 1 4.5384 -5.5779 -1.1744 47 1 3.9990 -3.2493 -0.2800 48 1 3.1409 -3.6728 -1.7868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036764913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:20 Heat of formation + Delta-G solvation = 22.629031 kcal Electronic energy + Delta-G solvation = -27905.474777 eV Core-core repulsion = 24153.602936 eV Total energy + Delta-G solvation = -3751.871841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.62795 -40.14942 -38.32185 -35.41717 -34.82893 -32.76425 -32.35262 -31.59432 -30.62962 -29.39969 -28.12860 -25.56638 -24.74735 -23.87198 -23.26196 -22.43421 -21.73558 -20.10945 -19.75354 -18.80516 -17.51868 -17.15027 -16.77971 -16.31968 -15.82882 -15.60652 -15.29026 -14.96236 -14.43648 -14.20959 -14.01753 -13.93702 -13.75064 -13.39970 -13.34056 -13.03769 -12.95803 -12.56599 -12.49398 -12.24260 -11.88173 -11.65658 -11.50929 -11.44421 -11.31041 -10.87013 -10.83166 -10.74693 -10.17972 -10.12141 -10.10481 -9.91635 -9.76512 -9.68265 -9.65701 -9.49592 -9.23705 -8.65103 -8.54081 -6.86210 -5.73870 -3.07076 0.77696 0.95812 2.64193 3.02258 3.37492 3.42666 3.45404 3.50176 4.11318 4.33325 4.46331 4.48426 4.63751 4.67441 4.70371 4.84570 4.90625 4.97986 5.05475 5.18217 5.25989 5.28489 5.33354 5.44898 5.52766 5.54970 5.58325 5.60075 5.76836 5.77696 5.85342 5.86337 6.00116 6.01736 6.12026 6.14826 6.20239 6.32643 6.38935 6.46221 6.58397 6.60208 6.80538 7.02974 7.45532 7.52640 7.59445 7.66933 7.78700 8.19356 8.21695 9.17168 9.80279 10.47742 11.38609 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.016593 B = 0.002539 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.058653 B =11023.473580 C =12231.344207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.596 5.596 10 C 0.179 3.821 11 C -0.136 4.136 12 C -0.123 4.123 13 H 0.078 0.922 14 C 0.125 3.875 15 N -0.607 5.607 16 C 0.512 3.488 17 O -0.549 6.549 18 C -0.135 4.135 19 C -0.061 4.061 20 C -0.131 4.131 21 C -0.073 4.073 22 C -0.171 4.171 23 C 0.090 3.910 24 N -0.484 5.484 25 C 0.102 3.898 26 C 0.111 3.889 27 C -0.130 4.130 28 C 0.166 3.834 29 H 0.020 0.980 30 H 0.252 0.748 31 H 0.054 0.946 32 H 0.039 0.961 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.002 -19.506 -3.898 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.320 5.320 10 C 0.054 3.946 11 C -0.175 4.175 12 C -0.143 4.143 13 H 0.096 0.904 14 C 0.004 3.996 15 N -0.340 5.340 16 C 0.300 3.700 17 O -0.428 6.428 18 C -0.175 4.175 19 C -0.099 4.099 20 C -0.133 4.133 21 C -0.099 4.099 22 C -0.191 4.191 23 C -0.067 4.067 24 N -0.192 5.192 25 C -0.055 4.055 26 C -0.013 4.013 27 C -0.169 4.169 28 C 0.058 3.942 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.171 0.829 44 H 0.173 0.827 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.744 -19.233 -4.820 23.045 hybrid contribution 0.310 0.699 0.894 1.176 sum 12.054 -18.534 -3.925 22.455 Atomic orbital electron populations 1.69944 1.04897 1.24937 1.57090 1.24799 0.95680 0.97646 1.02370 0.86088 0.78706 0.83981 0.77245 1.20532 1.21810 1.21790 1.19047 0.90374 0.82380 1.43603 0.90364 1.44413 1.01543 0.99446 1.86634 1.21518 0.83770 0.88301 1.00966 1.22703 0.95757 0.99683 0.99328 1.22618 0.97727 0.93329 1.00649 0.90375 1.21625 0.82009 0.97113 0.98896 1.48347 1.10152 1.27486 1.47977 1.20600 0.90772 0.80448 0.78203 1.90677 1.47063 1.46718 1.58312 1.21697 0.95063 0.99878 1.00874 1.20286 0.91622 0.97992 1.00037 1.20971 0.97389 0.98459 0.96476 1.21551 0.93102 0.96020 0.99264 1.22158 0.97320 1.01693 0.97935 1.22778 0.98967 0.92881 0.92046 1.67709 1.03174 1.14740 1.33548 1.22765 0.92594 0.96760 0.93346 1.21814 0.88595 0.90472 1.00400 1.21867 0.99547 0.93516 1.02001 1.20735 0.91056 0.87283 0.95170 0.96235 0.93794 0.92789 0.94279 0.92018 0.92332 0.89247 0.91414 0.88578 0.88902 0.89904 0.89651 0.84796 0.84816 0.82892 0.82688 0.91606 0.90199 0.90483 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.73 10.44 55.49 0.58 -26.15 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.23 -6.04 9.89 -15.06 -0.15 -6.19 16 8 H 0.08 2.01 7.27 -52.49 -0.38 1.62 16 9 N -0.60 -14.58 3.37 -162.65 -0.55 -15.13 16 10 C 0.18 4.24 5.46 -1.92 -0.01 4.23 16 11 C -0.14 -2.48 6.56 -25.13 -0.16 -2.65 16 12 C -0.12 -2.13 2.81 -89.36 -0.25 -2.38 16 13 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 14 C 0.13 1.86 5.96 -3.76 -0.02 1.83 16 15 N -0.61 -8.16 3.00 -172.49 -0.52 -8.68 16 16 C 0.51 6.69 7.67 -10.99 -0.08 6.61 16 17 O -0.55 -8.92 15.34 5.55 0.09 -8.83 16 18 C -0.14 -1.24 4.01 -27.88 -0.11 -1.35 16 19 C -0.06 -0.54 4.66 -27.88 -0.13 -0.67 16 20 C -0.13 -1.10 5.15 -104.48 -0.54 -1.64 16 21 C -0.07 -0.54 9.86 -39.28 -0.39 -0.93 16 22 C -0.17 -1.17 10.11 -39.44 -0.40 -1.57 16 23 C 0.09 0.73 11.18 -17.55 -0.20 0.54 16 24 N -0.48 -5.02 10.36 -13.25 -0.14 -5.16 16 25 C 0.10 0.96 10.86 -17.55 -0.19 0.77 16 26 C 0.11 1.33 6.21 -3.49 -0.02 1.31 16 27 C -0.13 -2.08 5.54 -27.02 -0.15 -2.23 16 28 C 0.17 3.19 2.61 -67.65 -0.18 3.02 16 29 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 32 H 0.04 1.02 7.77 -51.93 -0.40 0.61 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.99 8.11 -51.93 -0.42 0.56 16 35 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 36 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.10 0.82 7.54 -51.93 -0.39 0.42 16 38 H 0.09 0.71 7.99 -51.93 -0.41 0.29 16 39 H 0.08 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.08 0.81 8.05 -51.93 -0.42 0.39 16 41 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.75 5.84 -51.93 -0.30 0.45 16 47 H 0.08 1.25 7.67 -51.93 -0.40 0.85 16 48 H 0.07 1.15 8.11 -51.93 -0.42 0.73 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -32.60 378.96 -10.56 -43.16 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.63 Total: 0.00 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -3.08 Total: -1.64 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.62 Total: -55.11 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.60 -10.56 -43.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036764913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.788 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds