Wall clock time and date at job start Tue Mar 31 2020 15:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48499 * 109.47411 * 269.99785 * 3 2 1 5 5 H 1.48507 * 109.47166 * 30.00087 * 3 2 1 6 6 H 1.48508 * 109.46869 * 149.99887 * 3 2 1 7 7 C 1.38810 * 119.99434 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99600 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00617 * 359.97438 * 7 2 1 10 10 C 1.47578 * 134.48985 * 0.02562 * 9 7 2 11 11 C 1.53944 * 86.11694 * 204.63882 * 10 9 7 12 12 C 1.47577 * 134.49302 * 180.02562 * 9 7 2 13 13 H 1.09004 * 113.87223 * 269.67089 * 12 9 7 14 14 C 1.52995 * 113.77264 * 41.06058 * 12 9 7 15 15 N 1.46498 * 109.47191 * 281.49494 * 14 12 9 16 16 C 1.34773 * 120.00499 * 179.97438 * 15 14 12 17 17 O 1.21552 * 119.99775 * 0.02562 * 16 15 14 18 18 C 1.47855 * 120.00615 * 179.97438 * 16 15 14 19 19 C 1.39617 * 120.10864 * 359.97438 * 18 16 15 20 20 C 1.37982 * 120.00855 * 179.97438 * 19 18 16 21 21 C 1.38241 * 120.22792 * 359.79097 * 20 19 18 22 22 C 1.38988 * 120.21838 * 0.46272 * 21 20 19 23 23 N 1.39704 * 120.00384 * 179.78899 * 22 21 20 24 24 C 1.47902 * 111.00086 * 233.99696 * 23 22 21 25 25 C 1.53992 * 107.22625 * 214.25859 * 24 23 22 26 26 C 1.54596 * 105.13954 * 1.11868 * 25 24 23 27 27 C 1.48803 * 111.18648 * 116.65459 * 23 22 21 28 28 C 1.38680 * 119.98931 * 359.51559 * 22 21 20 29 29 H 0.97003 * 119.99719 * 0.02562 * 1 2 3 30 30 H 1.09002 * 113.77041 * 90.33823 * 10 9 7 31 31 H 1.09002 * 113.86864 * 318.94707 * 10 9 7 32 32 H 1.09002 * 113.74645 * 222.04852 * 11 10 9 33 33 H 1.09004 * 113.84054 * 90.74792 * 11 10 9 34 34 H 1.09005 * 109.47658 * 161.49280 * 14 12 9 35 35 H 1.09003 * 109.47275 * 41.49274 * 14 12 9 36 36 H 0.97001 * 119.99761 * 0.02562 * 15 14 12 37 37 H 1.08009 * 119.99432 * 0.02562 * 19 18 16 38 38 H 1.08001 * 119.88698 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.89635 * 180.24933 * 21 20 19 40 40 H 1.08998 * 109.92116 * 94.80034 * 24 23 22 41 41 H 1.09003 * 109.91565 * 333.70132 * 24 23 22 42 42 H 1.08999 * 110.31461 * 120.03636 * 25 24 23 43 43 H 1.09000 * 110.30999 * 242.10798 * 25 24 23 44 44 H 1.09001 * 110.72741 * 140.31496 * 26 25 24 45 45 H 1.08993 * 110.72676 * 263.60624 * 26 25 24 46 46 H 1.09004 * 110.51578 * 41.07341 * 27 23 22 47 47 H 1.08999 * 110.84894 * 278.09569 * 27 23 22 48 48 H 1.07998 * 120.11363 * 180.27021 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1033 -2.7574 -0.0005 11 6 0.3469 -4.0829 0.6398 12 6 1.7201 -3.8101 -0.0005 13 1 1.8325 -4.2367 -0.9973 14 6 2.9023 -4.1222 0.9192 15 7 4.1496 -3.7190 0.2650 16 6 5.3285 -3.8990 0.8927 17 8 5.3570 -4.3964 2.0014 18 6 6.5874 -3.4926 0.2323 19 6 6.5576 -2.9226 -1.0418 20 6 7.7337 -2.5436 -1.6559 21 6 8.9439 -2.7222 -1.0122 22 6 8.9851 -3.2936 0.2541 23 7 10.2110 -3.4760 0.8987 24 6 10.3838 -4.8830 1.3206 25 6 11.1690 -4.8687 2.6453 26 6 11.4032 -3.3733 2.9597 27 6 10.2876 -2.6695 2.1469 28 6 7.8086 -3.6773 0.8800 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5272 -2.8730 -0.9981 31 1 -0.7184 -2.1399 0.6541 32 1 -0.1592 -4.9597 0.2359 33 1 0.3594 -4.0639 1.7296 34 1 2.9297 -5.1921 1.1256 35 1 2.7892 -3.5745 1.8548 36 1 4.1268 -3.3217 -0.6196 37 1 5.6138 -2.7774 -1.5464 38 1 7.7083 -2.1024 -2.6414 39 1 9.8608 -2.4199 -1.4962 40 1 10.9434 -5.4318 0.5631 41 1 9.4094 -5.3477 1.4717 42 1 10.5831 -5.3347 3.4375 43 1 12.1214 -5.3854 2.5261 44 1 11.2840 -3.1800 4.0258 45 1 12.3882 -3.0567 2.6170 46 1 9.3395 -2.7055 2.6837 47 1 10.5643 -1.6386 1.9263 48 1 7.8378 -4.1175 1.8657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038848721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:34 Heat of formation + Delta-G solvation = 55.802393 kcal Electronic energy + Delta-G solvation = -27866.285868 eV Core-core repulsion = 24115.852532 eV Total energy + Delta-G solvation = -3750.433336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.58697 -39.35774 -38.04819 -37.38548 -34.21211 -32.83879 -32.19746 -31.26496 -29.16218 -28.78978 -27.98985 -27.52737 -23.91180 -23.39162 -23.27404 -21.92494 -21.24688 -21.01414 -20.03799 -19.15072 -18.12382 -16.72966 -16.47147 -16.08520 -15.94856 -15.75066 -15.32350 -14.69635 -14.61385 -14.31264 -14.27760 -13.93148 -13.71900 -13.45486 -13.37940 -12.99076 -12.94097 -12.39626 -12.19438 -11.91550 -11.83229 -11.65850 -11.46373 -11.45112 -11.36221 -11.12517 -11.04158 -10.87362 -10.74838 -10.57929 -10.07817 -9.79063 -9.74639 -9.41628 -9.07838 -8.94236 -8.82219 -8.75212 -8.58375 -6.92229 -5.78957 -3.11639 0.83474 1.14518 2.96440 3.35799 3.41525 3.43331 3.44694 3.62901 3.82865 4.35015 4.40764 4.50448 4.66116 4.74924 4.79816 4.98256 5.02156 5.09799 5.14220 5.21153 5.27123 5.37060 5.42066 5.51833 5.54318 5.55628 5.59384 5.66693 5.68229 5.72647 5.78465 5.85923 5.88890 6.04995 6.19779 6.22370 6.26983 6.31185 6.38231 6.44111 6.57695 6.59804 6.67784 6.84193 7.15976 7.22297 7.38395 7.56914 7.82666 7.95983 8.47348 9.01800 9.68629 10.56626 11.37736 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.002999 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.074252 B = 9333.773362 C =10260.585850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.123 3.877 15 N -0.706 5.706 16 C 0.552 3.448 17 O -0.549 6.549 18 C -0.118 4.118 19 C -0.086 4.086 20 C -0.119 4.119 21 C -0.074 4.074 22 C 0.067 3.933 23 N -0.481 5.481 24 C 0.034 3.966 25 C -0.132 4.132 26 C -0.123 4.123 27 C 0.035 3.965 28 C -0.092 4.092 29 H 0.253 0.747 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.402 0.598 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.053 0.947 47 H 0.086 0.914 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.767 -9.525 -0.332 21.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.034 3.966 11 C -0.194 4.194 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.001 4.001 15 N -0.356 5.356 16 C 0.339 3.661 17 O -0.429 6.429 18 C -0.121 4.121 19 C -0.105 4.105 20 C -0.138 4.138 21 C -0.093 4.093 22 C -0.027 4.027 23 N -0.203 5.203 24 C -0.093 4.093 25 C -0.170 4.170 26 C -0.161 4.161 27 C -0.091 4.091 28 C -0.113 4.113 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.238 0.762 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.179 -9.368 0.108 21.345 hybrid contribution -0.283 1.005 -0.090 1.048 sum 18.896 -8.363 0.017 20.664 Atomic orbital electron populations 1.69820 1.04967 1.25281 1.56562 1.24753 0.95615 0.97405 1.02522 0.86213 0.78779 0.83801 0.77576 1.21593 1.21594 1.20652 1.18931 0.90115 0.81921 1.43791 0.90428 1.46076 1.02315 0.98530 1.85964 1.22196 0.87917 0.89600 0.96913 1.23772 0.96061 0.99008 1.00595 1.22511 0.92361 0.87729 0.95645 0.93290 1.21805 0.82104 0.98800 0.97437 1.45899 1.05985 1.62434 1.21307 1.18245 0.83685 0.78775 0.85380 1.90728 1.87471 1.45120 1.19580 1.19930 0.93634 1.02997 0.95584 1.21451 0.99135 0.96057 0.93850 1.21075 0.91786 1.00451 1.00483 1.21148 0.98245 0.96694 0.93194 1.18894 0.88290 1.00638 0.94899 1.62516 1.28460 1.06579 1.22713 1.23025 1.00213 0.89121 0.96907 1.22414 1.00672 0.97159 0.96738 1.22483 0.99123 0.94677 0.99791 1.23433 0.98578 0.98226 0.88851 1.21707 0.91474 0.98098 1.00024 0.93669 0.95546 0.90806 0.92769 0.90480 0.92022 0.90814 0.76226 0.85161 0.84924 0.85046 0.90035 0.92754 0.91204 0.90807 0.90726 0.90592 0.92819 0.89610 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 11.39 55.49 0.63 -26.23 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.22 -5.88 10.51 -15.06 -0.16 -6.03 16 8 H 0.08 2.00 7.80 -52.48 -0.41 1.59 16 9 N -0.60 -14.57 3.57 -170.77 -0.61 -15.18 16 10 C 0.16 3.62 7.51 -2.98 -0.02 3.59 16 11 C -0.16 -2.81 7.86 -25.81 -0.20 -3.02 16 12 C 0.13 2.38 4.33 -66.87 -0.29 2.09 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C 0.12 2.24 5.54 -4.05 -0.02 2.22 16 15 N -0.71 -12.19 5.48 -61.25 -0.34 -12.53 16 16 C 0.55 9.82 7.77 -12.33 -0.10 9.73 16 17 O -0.55 -11.33 16.34 5.32 0.09 -11.25 16 18 C -0.12 -1.77 5.87 -105.00 -0.62 -2.39 16 19 C -0.09 -1.11 9.54 -39.16 -0.37 -1.48 16 20 C -0.12 -1.31 10.02 -39.67 -0.40 -1.71 16 21 C -0.07 -0.81 9.96 -39.30 -0.39 -1.21 16 22 C 0.07 0.81 4.87 -83.83 -0.41 0.41 16 23 N -0.48 -5.20 5.28 -166.97 -0.88 -6.08 16 24 C 0.03 0.32 6.47 -2.75 -0.02 0.31 16 25 C -0.13 -1.02 6.93 -25.37 -0.18 -1.20 16 26 C -0.12 -0.95 7.07 -24.87 -0.18 -1.13 16 27 C 0.04 0.35 6.45 -1.74 -0.01 0.34 16 28 C -0.09 -1.29 7.45 -38.97 -0.29 -1.58 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.40 6.47 6.50 -40.82 -0.27 6.20 16 37 H 0.13 1.56 6.40 -52.48 -0.34 1.22 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.59 7.03 -51.93 -0.36 0.23 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.13 1.92 6.63 -52.49 -0.35 1.57 16 LS Contribution 386.49 15.07 5.82 5.82 Total: -1.00 -32.12 386.49 -11.53 -43.65 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.47 Total: 6.14 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -3.75 Total: -1.32 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -1.20 Total: -60.01 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.12 -11.53 -43.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038848721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.449 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds