Wall clock time and date at job start Tue Mar 31 2020 15:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00030 * 2 1 4 4 H 1.48499 * 109.47411 * 269.99785 * 3 2 1 5 5 H 1.48507 * 109.47166 * 30.00087 * 3 2 1 6 6 H 1.48508 * 109.46869 * 149.99887 * 3 2 1 7 7 C 1.38810 * 119.99434 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99600 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00617 * 359.97438 * 7 2 1 10 10 C 1.47578 * 134.48985 * 0.02562 * 9 7 2 11 11 C 1.53944 * 86.11694 * 204.63882 * 10 9 7 12 12 C 1.47577 * 134.49302 * 180.02562 * 9 7 2 13 13 H 1.09004 * 113.87223 * 269.67089 * 12 9 7 14 14 C 1.52995 * 113.77264 * 41.06058 * 12 9 7 15 15 N 1.46498 * 109.47191 * 281.49494 * 14 12 9 16 16 C 1.34773 * 120.00499 * 179.97438 * 15 14 12 17 17 O 1.21552 * 119.99775 * 0.02562 * 16 15 14 18 18 C 1.47855 * 120.00615 * 179.97438 * 16 15 14 19 19 C 1.39617 * 120.10864 * 359.97438 * 18 16 15 20 20 C 1.37982 * 120.00855 * 179.97438 * 19 18 16 21 21 C 1.38241 * 120.22792 * 359.79097 * 20 19 18 22 22 C 1.38988 * 120.21838 * 0.46272 * 21 20 19 23 23 N 1.39704 * 120.00384 * 179.78899 * 22 21 20 24 24 C 1.47902 * 111.00086 * 233.99696 * 23 22 21 25 25 C 1.53992 * 107.22625 * 214.25859 * 24 23 22 26 26 C 1.54596 * 105.13954 * 1.11868 * 25 24 23 27 27 C 1.48803 * 111.18648 * 116.65459 * 23 22 21 28 28 C 1.38680 * 119.98931 * 359.51559 * 22 21 20 29 29 H 0.97003 * 119.99719 * 0.02562 * 1 2 3 30 30 H 1.09002 * 113.77041 * 90.33823 * 10 9 7 31 31 H 1.09002 * 113.86864 * 318.94707 * 10 9 7 32 32 H 1.09002 * 113.74645 * 222.04852 * 11 10 9 33 33 H 1.09004 * 113.84054 * 90.74792 * 11 10 9 34 34 H 1.09005 * 109.47658 * 161.49280 * 14 12 9 35 35 H 1.09003 * 109.47275 * 41.49274 * 14 12 9 36 36 H 0.97001 * 119.99761 * 0.02562 * 15 14 12 37 37 H 1.08009 * 119.99432 * 0.02562 * 19 18 16 38 38 H 1.08001 * 119.88698 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.89635 * 180.24933 * 21 20 19 40 40 H 1.08998 * 109.92116 * 94.80034 * 24 23 22 41 41 H 1.09003 * 109.91565 * 333.70132 * 24 23 22 42 42 H 1.08999 * 110.31461 * 120.03636 * 25 24 23 43 43 H 1.09000 * 110.30999 * 242.10798 * 25 24 23 44 44 H 1.09001 * 110.72741 * 140.31496 * 26 25 24 45 45 H 1.08993 * 110.72676 * 263.60624 * 26 25 24 46 46 H 1.09004 * 110.51578 * 41.07341 * 27 23 22 47 47 H 1.08999 * 110.84894 * 278.09569 * 27 23 22 48 48 H 1.07998 * 120.11363 * 180.27021 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1033 -2.7574 -0.0005 11 6 0.3469 -4.0829 0.6398 12 6 1.7201 -3.8101 -0.0005 13 1 1.8325 -4.2367 -0.9973 14 6 2.9023 -4.1222 0.9192 15 7 4.1496 -3.7190 0.2650 16 6 5.3285 -3.8990 0.8927 17 8 5.3570 -4.3964 2.0014 18 6 6.5874 -3.4926 0.2323 19 6 6.5576 -2.9226 -1.0418 20 6 7.7337 -2.5436 -1.6559 21 6 8.9439 -2.7222 -1.0122 22 6 8.9851 -3.2936 0.2541 23 7 10.2110 -3.4760 0.8987 24 6 10.3838 -4.8830 1.3206 25 6 11.1690 -4.8687 2.6453 26 6 11.4032 -3.3733 2.9597 27 6 10.2876 -2.6695 2.1469 28 6 7.8086 -3.6773 0.8800 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5272 -2.8730 -0.9981 31 1 -0.7184 -2.1399 0.6541 32 1 -0.1592 -4.9597 0.2359 33 1 0.3594 -4.0639 1.7296 34 1 2.9297 -5.1921 1.1256 35 1 2.7892 -3.5745 1.8548 36 1 4.1268 -3.3217 -0.6196 37 1 5.6138 -2.7774 -1.5464 38 1 7.7083 -2.1024 -2.6414 39 1 9.8608 -2.4199 -1.4962 40 1 10.9434 -5.4318 0.5631 41 1 9.4094 -5.3477 1.4717 42 1 10.5831 -5.3347 3.4375 43 1 12.1214 -5.3854 2.5261 44 1 11.2840 -3.1800 4.0258 45 1 12.3882 -3.0567 2.6170 46 1 9.3395 -2.7055 2.6837 47 1 10.5643 -1.6386 1.9263 48 1 7.8378 -4.1175 1.8657 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038848721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:33 Heat of formation + Delta-G solvation = 35.756799 kcal Electronic energy + Delta-G solvation = -27867.155110 eV Core-core repulsion = 24115.852532 eV Total energy + Delta-G solvation = -3751.302578 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.62057 -40.59009 -39.60419 -38.41984 -35.69249 -34.24317 -33.64981 -32.30441 -30.01964 -29.88286 -29.71222 -28.89110 -25.30301 -25.16866 -24.15349 -23.41763 -22.05962 -21.82895 -21.31773 -20.77572 -19.35364 -18.44410 -17.53052 -17.15967 -17.11779 -16.94619 -16.80879 -16.25452 -15.84447 -15.62024 -15.50075 -15.12261 -14.95042 -14.84250 -14.62530 -14.20694 -13.85839 -13.61832 -13.32121 -13.20209 -13.01561 -12.96254 -12.83358 -12.68653 -12.57725 -12.36160 -12.33899 -12.25721 -12.13938 -11.87459 -11.54736 -11.50136 -11.43985 -11.00733 -10.83191 -10.24821 -9.95806 -9.83663 -9.63764 -8.89305 -7.87714 -5.19311 -0.22468 0.18494 1.42521 1.44303 1.51634 1.75660 2.10274 2.46449 2.73103 2.81250 3.30622 3.37149 3.60159 3.64950 3.82005 3.84841 3.96744 3.98701 4.01338 4.11066 4.18781 4.26350 4.32520 4.36396 4.53990 4.58278 4.58780 4.67676 4.73724 4.78348 4.84597 4.86063 4.89917 4.99651 5.05109 5.06986 5.09439 5.19323 5.22595 5.30265 5.32447 5.34711 5.37671 5.60605 5.66206 5.69351 5.73749 5.97692 6.25726 6.45715 6.95057 7.09627 7.64747 8.59296 9.29172 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.014333 B = 0.002999 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.074252 B = 9333.773362 C =10260.585850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.276 1.276 7 C -0.213 4.213 8 H 0.083 0.917 9 N -0.630 5.630 10 C 0.150 3.850 11 C -0.131 4.131 12 C 0.133 3.867 13 H 0.074 0.926 14 C 0.131 3.869 15 N -0.703 5.703 16 C 0.550 3.450 17 O -0.587 6.587 18 C -0.140 4.140 19 C -0.090 4.090 20 C -0.111 4.111 21 C -0.067 4.067 22 C 0.065 3.935 23 N -0.481 5.481 24 C 0.030 3.970 25 C -0.129 4.129 26 C -0.116 4.116 27 C 0.030 3.970 28 C -0.101 4.101 29 H 0.245 0.755 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.042 0.958 36 H 0.408 0.592 37 H 0.138 0.862 38 H 0.166 0.834 39 H 0.157 0.843 40 H 0.091 0.909 41 H 0.037 0.963 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.034 0.966 47 H 0.090 0.910 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.252 -10.192 -1.710 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.342 4.342 8 H 0.101 0.899 9 N -0.356 5.356 10 C 0.025 3.975 11 C -0.169 4.169 12 C 0.027 3.973 13 H 0.091 0.909 14 C 0.007 3.993 15 N -0.353 5.353 16 C 0.338 3.662 17 O -0.469 6.469 18 C -0.144 4.144 19 C -0.109 4.109 20 C -0.129 4.129 21 C -0.085 4.085 22 C -0.030 4.030 23 N -0.202 5.202 24 C -0.096 4.096 25 C -0.167 4.167 26 C -0.154 4.154 27 C -0.096 4.096 28 C -0.122 4.122 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.060 0.940 36 H 0.245 0.755 37 H 0.156 0.844 38 H 0.183 0.817 39 H 0.174 0.826 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.052 0.948 47 H 0.109 0.891 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 21.687 -10.066 -1.292 23.944 hybrid contribution -0.993 1.139 0.327 1.545 sum 20.694 -8.927 -0.965 22.558 Atomic orbital electron populations 1.69999 1.06236 1.25198 1.58918 1.25491 0.96399 1.00433 1.03885 0.85274 0.77538 0.80172 0.77599 1.20851 1.22576 1.20113 1.19268 0.90590 0.83096 1.41196 0.89933 1.46419 1.03319 0.99913 1.85966 1.22169 0.87057 0.91728 0.96546 1.23570 0.94991 0.97943 1.00429 1.22680 0.93122 0.84723 0.96821 0.90855 1.21612 0.82386 0.99474 0.95869 1.45854 1.05650 1.62341 1.21472 1.18712 0.84588 0.77906 0.84948 1.90696 1.88054 1.46938 1.21252 1.19806 0.92441 1.05300 0.96875 1.21600 1.00464 0.95846 0.92995 1.21432 0.90782 0.99167 1.01490 1.21492 0.99383 0.95214 0.92445 1.19088 0.88119 1.00280 0.95470 1.62636 1.27288 1.07259 1.23033 1.23096 0.99766 0.88503 0.98265 1.22426 1.01197 0.97459 0.95610 1.22488 0.98729 0.94192 1.00028 1.23499 0.98552 0.98771 0.88803 1.21650 0.92130 0.98848 0.99602 0.94552 0.95777 0.94329 0.88627 0.90468 0.90006 0.93981 0.75469 0.84410 0.81679 0.82577 0.89086 0.94497 0.91382 0.88988 0.89815 0.89408 0.94773 0.89137 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.26 11.39 21.65 0.25 -57.01 16 2 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 3 Si 0.96 45.81 29.55 68.60 2.03 47.83 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.21 -11.40 10.51 84.03 0.88 -10.51 16 8 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 9 N -0.63 -30.32 3.57 -694.18 -2.48 -32.80 16 10 C 0.15 6.86 7.51 86.48 0.65 7.51 16 11 C -0.13 -4.49 7.86 31.25 0.25 -4.25 16 12 C 0.13 4.83 4.33 45.09 0.20 5.02 16 13 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.13 4.68 5.54 86.38 0.48 5.16 16 15 N -0.70 -23.91 5.48 -465.97 -2.55 -26.47 16 16 C 0.55 19.79 7.77 86.79 0.67 20.47 16 17 O -0.59 -24.99 16.34 -3.88 -0.06 -25.05 16 18 C -0.14 -4.21 5.87 -20.11 -0.12 -4.33 16 19 C -0.09 -2.18 9.54 22.54 0.21 -1.96 16 20 C -0.11 -2.08 10.02 22.21 0.22 -1.86 16 21 C -0.07 -1.28 9.96 22.45 0.22 -1.06 16 22 C 0.06 1.50 4.87 38.17 0.19 1.69 16 23 N -0.48 -9.76 5.28 -682.18 -3.60 -13.36 16 24 C 0.03 0.55 6.47 86.45 0.56 1.11 16 25 C -0.13 -1.81 6.93 31.47 0.22 -1.59 16 26 C -0.12 -1.60 7.07 31.80 0.22 -1.38 16 27 C 0.03 0.56 6.45 86.60 0.56 1.12 16 28 C -0.10 -2.87 7.45 22.67 0.17 -2.70 16 29 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.04 2.02 7.16 -2.39 -0.02 2.00 16 32 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 34 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.41 12.70 6.50 -92.71 -0.60 12.10 16 37 H 0.14 3.04 6.40 -2.91 -0.02 3.02 16 38 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 0.80 6.30 -2.39 -0.02 0.78 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.03 0.78 7.03 -2.38 -0.02 0.76 16 47 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.11 3.56 6.63 -2.91 -0.02 3.54 16 Total: -1.00 -71.50 386.49 -0.02 -71.52 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.36 Total: 26.34 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.05 Total: 8.99 kcal Atomic # 7 Polarization: -121.25 SS G_CDS: -8.39 Total: -129.64 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.06 Total: -25.05 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.50 -0.02 -71.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038848721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.278 kcal (2) G-P(sol) polarization free energy of solvation -71.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds