Wall clock time and date at job start Tue Mar 31 2020 16:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48497 * 109.47353 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47066 * 239.99445 * 3 2 1 6 6 H 1.48506 * 109.47231 * 120.00152 * 3 2 1 7 7 C 1.38814 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99772 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99959 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00040 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.46745 * 35.00511 * 10 9 7 12 12 C 1.52998 * 109.47268 * 275.00854 * 10 9 7 13 13 C 1.53005 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47398 * 59.99846 * 13 12 10 15 15 C 1.53003 * 109.46773 * 300.00118 * 14 13 12 16 16 C 1.52995 * 109.47330 * 59.99770 * 15 14 13 17 17 H 1.08997 * 109.47104 * 60.00081 * 16 15 14 18 18 N 1.46499 * 109.47328 * 179.97438 * 16 15 14 19 19 C 1.34782 * 119.99981 * 275.00274 * 18 16 15 20 20 O 1.21548 * 119.99792 * 0.02562 * 19 18 16 21 21 C 1.47843 * 119.99890 * 179.97438 * 19 18 16 22 22 C 1.40025 * 120.55890 * 354.30669 * 21 19 18 23 23 C 1.38356 * 118.28393 * 179.73211 * 22 21 19 24 24 C 1.38354 * 119.30356 * 0.54000 * 23 22 21 25 25 N 1.31919 * 121.08139 * 359.71759 * 24 23 22 26 26 C 1.31699 * 121.87998 * 0.02562 * 25 24 23 27 27 C 1.50697 * 119.71763 * 180.02562 * 26 25 24 28 28 C 1.53004 * 117.49813 * 358.48975 * 27 26 25 29 29 C 1.52997 * 60.00246 * 252.51304 * 28 27 26 30 30 H 0.97000 * 120.00059 * 180.02562 * 1 2 3 31 31 H 0.96999 * 119.99927 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46958 * 299.99527 * 12 10 9 33 33 H 1.08991 * 109.47687 * 59.99889 * 12 10 9 34 34 H 1.08997 * 109.47161 * 299.99576 * 13 12 10 35 35 H 1.08999 * 109.46909 * 179.97438 * 13 12 10 36 36 H 1.08992 * 109.47041 * 179.97438 * 14 13 12 37 37 H 1.08997 * 109.47184 * 59.99744 * 14 13 12 38 38 H 1.08997 * 109.46960 * 299.99763 * 15 14 13 39 39 H 1.09001 * 109.46732 * 180.02562 * 15 14 13 40 40 H 0.96997 * 120.00533 * 94.99569 * 18 16 15 41 41 H 1.07992 * 120.85377 * 359.97202 * 22 21 19 42 42 H 1.08001 * 120.34858 * 180.23833 * 23 22 21 43 43 H 1.08001 * 119.45556 * 179.70158 * 24 23 22 44 44 H 1.08997 * 115.55225 * 144.20488 * 27 26 25 45 45 H 1.09001 * 117.50165 * 0.02562 * 28 27 26 46 46 H 1.09000 * 117.49303 * 145.02278 * 28 27 26 47 47 H 1.08998 * 117.49898 * 252.50971 * 29 28 27 48 48 H 1.08999 * 117.51689 * 107.47918 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9692 -3.5502 0.5904 12 6 2.4210 -4.0361 -1.4355 13 6 3.1855 -5.3615 -1.4354 14 6 2.3082 -6.4564 -0.8250 15 6 1.9452 -6.0769 0.6121 16 6 1.1808 -4.7515 0.6121 17 1 0.2698 -4.8576 0.0232 18 7 0.8328 -4.3885 1.9881 19 6 -0.2854 -4.8848 2.5537 20 8 -1.0047 -5.6340 1.9223 21 6 -0.6363 -4.5189 3.9425 22 6 0.2417 -3.7548 4.7209 23 6 -0.1366 -3.4346 6.0126 24 6 -1.3534 -3.8847 6.4931 25 7 -2.1583 -4.6077 5.7384 26 6 -1.8453 -4.9341 4.5014 27 6 -2.8019 -5.7617 3.6824 28 6 -4.0975 -6.2178 4.3565 29 6 -2.9836 -7.2288 4.0772 30 1 -0.4850 -0.8400 0.0004 31 1 0.3556 -2.3880 0.0016 32 1 1.5099 -4.1427 -2.0243 33 1 3.0456 -3.2561 -1.8705 34 1 4.0965 -5.2555 -0.8465 35 1 3.4436 -5.6320 -2.4593 36 1 2.8526 -7.4006 -0.8254 37 1 1.3971 -6.5624 -1.4138 38 1 2.8563 -5.9708 1.2010 39 1 1.3206 -6.8570 1.0472 40 1 1.4070 -3.7910 2.4921 41 1 1.1881 -3.4209 4.3219 42 1 0.5134 -2.8437 6.6410 43 1 -1.6490 -3.6403 7.5027 44 1 -2.8455 -5.5171 2.6211 45 1 -4.2582 -5.9189 5.3924 46 1 -4.9938 -6.2731 3.7387 47 1 -3.1471 -7.9491 3.2757 48 1 -2.4109 -7.5953 4.9291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085259708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:06 Heat of formation + Delta-G solvation = 26.279303 kcal Electronic energy + Delta-G solvation = -28785.763863 eV Core-core repulsion = 25034.050309 eV Total energy + Delta-G solvation = -3751.713553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.84059 -39.38781 -37.77934 -36.80737 -34.36626 -33.99074 -32.56291 -31.24163 -31.15426 -29.28339 -27.51738 -24.69855 -24.48256 -23.61411 -22.36640 -22.06504 -21.34154 -20.85405 -20.22380 -19.68138 -17.70493 -17.27488 -16.98910 -16.47439 -15.60419 -15.46038 -15.02928 -14.79586 -14.51510 -14.17031 -14.09790 -13.81100 -13.68117 -13.58049 -13.46475 -13.10830 -12.74200 -12.53022 -12.32018 -12.12131 -11.79448 -11.43220 -11.06560 -10.99249 -10.93096 -10.75160 -10.72183 -10.51752 -10.38447 -10.32543 -10.01815 -9.92614 -9.88410 -9.86165 -9.25884 -9.24183 -8.98482 -8.92835 -8.63062 -7.10398 -6.14525 -3.15972 0.64081 1.10588 2.99562 3.33035 3.46516 3.49779 3.67759 3.68830 4.05213 4.17922 4.54568 4.59506 4.66780 4.73814 4.95815 4.96477 5.04648 5.09442 5.17870 5.20646 5.22575 5.36348 5.44871 5.50726 5.59361 5.62279 5.69506 5.72466 5.76398 5.84379 5.88953 5.91233 5.95329 5.98225 6.02614 6.21137 6.23706 6.33886 6.36297 6.37452 6.41378 6.46018 6.54304 6.75398 6.79144 6.96938 7.72462 7.74714 7.86110 8.42287 8.70076 9.15683 10.02553 10.17568 11.32962 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.009638 B = 0.004293 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.546645 B = 6521.300429 C = 8381.228820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.042 4.042 3 Si 1.077 2.923 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.334 4.334 8 H 0.064 0.936 9 N -0.733 5.733 10 C 0.179 3.821 11 H 0.051 0.949 12 C -0.132 4.132 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.123 4.123 16 C 0.141 3.859 17 H 0.085 0.915 18 N -0.703 5.703 19 C 0.563 3.437 20 O -0.533 6.533 21 C -0.177 4.177 22 C -0.036 4.036 23 C -0.186 4.186 24 C 0.122 3.878 25 N -0.489 5.489 26 C 0.216 3.784 27 C -0.109 4.109 28 C -0.169 4.169 29 C -0.153 4.153 30 H 0.256 0.744 31 H 0.367 0.633 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.401 0.599 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.159 0.841 44 H 0.144 0.856 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 -13.095 9.561 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.240 4.240 3 Si 0.908 3.092 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.465 4.465 8 H 0.082 0.918 9 N -0.375 5.375 10 C 0.068 3.932 11 H 0.069 0.931 12 C -0.173 4.173 13 C -0.157 4.157 14 C -0.152 4.152 15 C -0.162 4.162 16 C 0.036 3.964 17 H 0.103 0.897 18 N -0.352 5.352 19 C 0.349 3.651 20 O -0.412 6.412 21 C -0.182 4.182 22 C -0.062 4.062 23 C -0.206 4.206 24 C -0.035 4.035 25 N -0.198 5.198 26 C 0.078 3.922 27 C -0.128 4.128 28 C -0.206 4.206 29 C -0.190 4.190 30 H 0.067 0.933 31 H 0.201 0.799 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.236 0.764 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.177 0.823 44 H 0.162 0.838 45 H 0.122 0.878 46 H 0.112 0.888 47 H 0.116 0.884 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.291 -12.180 9.457 15.423 hybrid contribution 1.233 -0.831 -0.105 1.491 sum 1.524 -13.011 9.352 16.096 Atomic orbital electron populations 1.70874 1.06069 1.28545 1.53020 1.25721 0.96993 1.00898 1.00361 0.83277 0.74239 0.75820 0.75819 1.21081 1.22289 1.22327 1.19985 0.91864 0.85657 1.48952 0.91804 1.42424 1.04805 1.00469 1.89815 1.20400 0.93805 0.85259 0.93727 0.93105 1.22196 0.99952 0.95651 0.99507 1.21581 0.98523 0.95570 1.00074 1.21471 0.99938 0.98072 0.95675 1.21864 0.99995 0.97116 0.97263 1.21346 0.99112 0.94214 0.81765 0.89729 1.45852 1.24875 1.48976 1.15488 1.17935 0.81073 0.80512 0.85567 1.90691 1.50065 1.36488 1.63935 1.20779 0.97400 1.03886 0.96109 1.21828 0.98651 0.92233 0.93532 1.22080 0.98941 1.02893 0.96685 1.22925 0.89866 0.91478 0.99214 1.67474 1.33521 1.13391 1.05391 1.20515 0.90685 0.91597 0.89417 1.21257 0.96312 0.95505 0.99706 1.22985 0.92093 1.03092 1.02441 1.22807 1.02350 0.91122 1.02767 0.93308 0.79914 0.92585 0.91537 0.92354 0.92576 0.92268 0.91946 0.92051 0.91771 0.76376 0.84212 0.84128 0.82333 0.83836 0.87780 0.88797 0.88418 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.54 13.70 55.49 0.76 -27.78 16 2 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 3 Si 1.08 25.19 29.92 -169.99 -5.09 20.11 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.30 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.30 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.33 -8.84 9.93 -15.06 -0.15 -8.99 16 8 H 0.06 1.66 7.83 -52.49 -0.41 1.25 16 9 N -0.73 -17.20 4.95 -53.43 -0.26 -17.47 16 10 C 0.18 3.31 2.29 -67.93 -0.16 3.15 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.13 -2.26 5.50 -26.73 -0.15 -2.41 16 13 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 14 C -0.11 -1.44 5.92 -26.73 -0.16 -1.59 16 15 C -0.12 -1.70 5.49 -26.73 -0.15 -1.85 16 16 C 0.14 2.32 1.97 -67.93 -0.13 2.19 16 17 H 0.08 1.58 7.57 -51.93 -0.39 1.19 16 18 N -0.70 -11.27 4.86 -54.76 -0.27 -11.54 16 19 C 0.56 9.46 7.70 -12.33 -0.09 9.37 16 20 O -0.53 -9.90 13.07 5.32 0.07 -9.83 16 21 C -0.18 -2.70 5.89 -104.82 -0.62 -3.32 16 22 C -0.04 -0.46 9.64 -38.87 -0.37 -0.84 16 23 C -0.19 -2.03 10.10 -39.49 -0.40 -2.43 16 24 C 0.12 1.39 11.17 -17.47 -0.20 1.20 16 25 N -0.49 -6.86 9.28 -9.15 -0.08 -6.94 16 26 C 0.22 3.30 6.50 -82.17 -0.53 2.77 16 27 C -0.11 -1.61 4.63 -91.77 -0.42 -2.04 16 28 C -0.17 -2.08 10.02 -26.73 -0.27 -2.35 16 29 C -0.15 -1.91 10.23 -26.73 -0.27 -2.19 16 30 H 0.26 7.75 6.77 -40.82 -0.28 7.48 16 31 H 0.37 9.33 6.63 -40.82 -0.27 9.06 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.40 6.12 6.74 -40.82 -0.28 5.85 16 41 H 0.14 1.58 6.56 -52.49 -0.34 1.24 16 42 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.14 2.39 6.10 -51.93 -0.32 2.08 16 45 H 0.10 1.29 7.54 -51.93 -0.39 0.90 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 47 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -31.53 385.02 -10.79 -42.32 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -7.39 Total: 17.68 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -4.33 Total: -12.35 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: 0.14 Total: -63.73 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.09 Total: 20.11 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.53 -10.79 -42.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085259708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.601 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds