Wall clock time and date at job start Tue Mar 31 2020 16:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99777 * 2 1 4 4 H 1.48497 * 109.47353 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47066 * 239.99445 * 3 2 1 6 6 H 1.48506 * 109.47231 * 120.00152 * 3 2 1 7 7 C 1.38814 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99772 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99959 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00040 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.46745 * 35.00511 * 10 9 7 12 12 C 1.52998 * 109.47268 * 275.00854 * 10 9 7 13 13 C 1.53005 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47398 * 59.99846 * 13 12 10 15 15 C 1.53003 * 109.46773 * 300.00118 * 14 13 12 16 16 C 1.52995 * 109.47330 * 59.99770 * 15 14 13 17 17 H 1.08997 * 109.47104 * 60.00081 * 16 15 14 18 18 N 1.46499 * 109.47328 * 179.97438 * 16 15 14 19 19 C 1.34782 * 119.99981 * 275.00274 * 18 16 15 20 20 O 1.21548 * 119.99792 * 0.02562 * 19 18 16 21 21 C 1.47843 * 119.99890 * 179.97438 * 19 18 16 22 22 C 1.40025 * 120.55890 * 354.30669 * 21 19 18 23 23 C 1.38356 * 118.28393 * 179.73211 * 22 21 19 24 24 C 1.38354 * 119.30356 * 0.54000 * 23 22 21 25 25 N 1.31919 * 121.08139 * 359.71759 * 24 23 22 26 26 C 1.31699 * 121.87998 * 0.02562 * 25 24 23 27 27 C 1.50697 * 119.71763 * 180.02562 * 26 25 24 28 28 C 1.53004 * 117.49813 * 358.48975 * 27 26 25 29 29 C 1.52997 * 60.00246 * 252.51304 * 28 27 26 30 30 H 0.97000 * 120.00059 * 180.02562 * 1 2 3 31 31 H 0.96999 * 119.99927 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.46958 * 299.99527 * 12 10 9 33 33 H 1.08991 * 109.47687 * 59.99889 * 12 10 9 34 34 H 1.08997 * 109.47161 * 299.99576 * 13 12 10 35 35 H 1.08999 * 109.46909 * 179.97438 * 13 12 10 36 36 H 1.08992 * 109.47041 * 179.97438 * 14 13 12 37 37 H 1.08997 * 109.47184 * 59.99744 * 14 13 12 38 38 H 1.08997 * 109.46960 * 299.99763 * 15 14 13 39 39 H 1.09001 * 109.46732 * 180.02562 * 15 14 13 40 40 H 0.96997 * 120.00533 * 94.99569 * 18 16 15 41 41 H 1.07992 * 120.85377 * 359.97202 * 22 21 19 42 42 H 1.08001 * 120.34858 * 180.23833 * 23 22 21 43 43 H 1.08001 * 119.45556 * 179.70158 * 24 23 22 44 44 H 1.08997 * 115.55225 * 144.20488 * 27 26 25 45 45 H 1.09001 * 117.50165 * 0.02562 * 28 27 26 46 46 H 1.09000 * 117.49303 * 145.02278 * 28 27 26 47 47 H 1.08998 * 117.49898 * 252.50971 * 29 28 27 48 48 H 1.08999 * 117.51689 * 107.47918 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9692 -3.5502 0.5904 12 6 2.4210 -4.0361 -1.4355 13 6 3.1855 -5.3615 -1.4354 14 6 2.3082 -6.4564 -0.8250 15 6 1.9452 -6.0769 0.6121 16 6 1.1808 -4.7515 0.6121 17 1 0.2698 -4.8576 0.0232 18 7 0.8328 -4.3885 1.9881 19 6 -0.2854 -4.8848 2.5537 20 8 -1.0047 -5.6340 1.9223 21 6 -0.6363 -4.5189 3.9425 22 6 0.2417 -3.7548 4.7209 23 6 -0.1366 -3.4346 6.0126 24 6 -1.3534 -3.8847 6.4931 25 7 -2.1583 -4.6077 5.7384 26 6 -1.8453 -4.9341 4.5014 27 6 -2.8019 -5.7617 3.6824 28 6 -4.0975 -6.2178 4.3565 29 6 -2.9836 -7.2288 4.0772 30 1 -0.4850 -0.8400 0.0004 31 1 0.3556 -2.3880 0.0016 32 1 1.5099 -4.1427 -2.0243 33 1 3.0456 -3.2561 -1.8705 34 1 4.0965 -5.2555 -0.8465 35 1 3.4436 -5.6320 -2.4593 36 1 2.8526 -7.4006 -0.8254 37 1 1.3971 -6.5624 -1.4138 38 1 2.8563 -5.9708 1.2010 39 1 1.3206 -6.8570 1.0472 40 1 1.4070 -3.7910 2.4921 41 1 1.1881 -3.4209 4.3219 42 1 0.5134 -2.8437 6.6410 43 1 -1.6490 -3.6403 7.5027 44 1 -2.8455 -5.5171 2.6211 45 1 -4.2582 -5.9189 5.3924 46 1 -4.9938 -6.2731 3.7387 47 1 -3.1471 -7.9491 3.2757 48 1 -2.4109 -7.5953 4.9291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085259708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:04 Heat of formation + Delta-G solvation = 7.549946 kcal Electronic energy + Delta-G solvation = -28786.576029 eV Core-core repulsion = 25034.050309 eV Total energy + Delta-G solvation = -3752.525719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.95284 -40.63983 -39.11075 -37.83754 -36.17757 -35.30019 -33.62877 -32.94748 -32.23125 -30.56859 -29.12906 -25.86230 -25.51731 -25.48122 -23.53577 -23.16912 -22.74555 -21.95861 -21.48270 -20.94835 -19.34941 -18.84640 -18.04270 -17.66879 -16.90231 -16.65105 -16.30736 -16.03394 -15.86839 -15.66267 -15.39469 -15.21878 -14.99574 -14.96120 -14.63049 -14.21816 -13.95356 -13.75256 -13.59704 -13.52871 -12.88820 -12.80974 -12.65774 -12.40209 -12.26733 -12.16035 -11.97577 -11.83314 -11.72754 -11.60300 -11.47506 -11.39105 -11.07911 -11.01204 -10.96277 -10.87414 -10.38194 -10.11249 -9.81721 -9.11773 -8.35707 -5.30691 -0.40105 0.12028 1.58358 1.67713 1.79489 1.83646 2.08035 2.63623 2.71497 3.03519 3.16889 3.42373 3.50098 3.55263 3.63674 3.73888 3.79917 3.95762 4.05176 4.09888 4.16274 4.18600 4.20104 4.21740 4.34203 4.37142 4.46067 4.50826 4.61428 4.64548 4.73136 4.87400 4.92224 4.93911 4.99270 5.01234 5.06209 5.16531 5.20450 5.21963 5.24093 5.30415 5.38593 5.47347 5.56868 5.60041 5.63430 6.45144 6.48737 6.84545 7.07917 7.13228 7.98110 8.12876 9.14782 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.009638 B = 0.004293 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.546645 B = 6521.300429 C = 8381.228820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.103 4.103 3 Si 1.124 2.876 4 H -0.300 1.300 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.320 4.320 8 H 0.071 0.929 9 N -0.744 5.744 10 C 0.178 3.822 11 H 0.057 0.943 12 C -0.127 4.127 13 C -0.109 4.109 14 C -0.110 4.110 15 C -0.114 4.114 16 C 0.149 3.851 17 H 0.055 0.945 18 N -0.701 5.701 19 C 0.558 3.442 20 O -0.559 6.559 21 C -0.204 4.204 22 C -0.043 4.043 23 C -0.177 4.177 24 C 0.124 3.876 25 N -0.504 5.504 26 C 0.200 3.800 27 C -0.134 4.134 28 C -0.153 4.153 29 C -0.143 4.143 30 H 0.239 0.761 31 H 0.354 0.646 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.404 0.596 41 H 0.151 0.849 42 H 0.178 0.822 43 H 0.199 0.801 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.106 0.894 47 H 0.104 0.896 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 -13.720 11.279 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.294 4.294 3 Si 0.950 3.050 4 H -0.226 1.226 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.451 4.451 8 H 0.089 0.911 9 N -0.384 5.384 10 C 0.069 3.931 11 H 0.075 0.925 12 C -0.168 4.168 13 C -0.147 4.147 14 C -0.148 4.148 15 C -0.153 4.153 16 C 0.044 3.956 17 H 0.073 0.927 18 N -0.350 5.350 19 C 0.346 3.654 20 O -0.440 6.440 21 C -0.209 4.209 22 C -0.070 4.070 23 C -0.196 4.196 24 C -0.034 4.034 25 N -0.213 5.213 26 C 0.062 3.938 27 C -0.153 4.153 28 C -0.190 4.190 29 C -0.180 4.180 30 H 0.050 0.950 31 H 0.185 0.815 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.241 0.759 41 H 0.169 0.831 42 H 0.196 0.804 43 H 0.215 0.785 44 H 0.133 0.867 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.464 -12.860 11.173 17.213 hybrid contribution 0.587 -0.668 -0.598 1.071 sum 3.050 -13.528 10.575 17.439 Atomic orbital electron populations 1.71001 1.07427 1.27586 1.56578 1.27063 0.96911 1.04534 1.00942 0.82665 0.73332 0.71809 0.77209 1.22642 1.20701 1.19889 1.20317 0.92253 0.86594 1.45967 0.91100 1.42611 1.04273 1.01647 1.89909 1.20607 0.93699 0.83855 0.94901 0.92516 1.22070 0.99471 0.97591 0.97652 1.21515 0.98366 0.93159 1.01678 1.21475 0.99866 0.99091 0.94338 1.21799 1.00007 0.94885 0.98580 1.21194 0.97736 0.95075 0.81587 0.92720 1.45819 1.24933 1.49042 1.15196 1.18284 0.80698 0.80097 0.86348 1.90671 1.50731 1.37743 1.64827 1.20754 0.98582 1.05991 0.95562 1.22080 0.98736 0.91784 0.94369 1.22501 0.99122 1.02006 0.95963 1.23664 0.89533 0.89800 1.00354 1.67513 1.34399 1.14354 1.05009 1.20585 0.90813 0.92165 0.90191 1.21130 0.98336 0.97239 0.98596 1.23022 0.91745 1.01893 1.02389 1.22837 1.02107 0.90222 1.02848 0.95024 0.81514 0.94203 0.93352 0.90934 0.90738 0.89272 0.92774 0.90370 0.92255 0.75947 0.83128 0.80422 0.78470 0.86665 0.87564 0.87572 0.87765 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.21 13.70 21.65 0.30 -60.91 16 2 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 3 Si 1.12 50.71 29.92 68.60 2.05 52.76 16 4 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 7 C -0.32 -17.03 9.93 84.03 0.83 -16.20 16 8 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 9 N -0.74 -35.83 4.95 -322.94 -1.60 -37.43 16 10 C 0.18 6.61 2.29 44.99 0.10 6.72 16 11 H 0.06 2.06 8.08 -2.38 -0.02 2.04 16 12 C -0.13 -4.33 5.50 30.60 0.17 -4.16 16 13 C -0.11 -2.67 5.92 30.60 0.18 -2.49 16 14 C -0.11 -2.54 5.92 30.60 0.18 -2.36 16 15 C -0.11 -3.01 5.49 30.59 0.17 -2.84 16 16 C 0.15 5.02 1.97 44.99 0.09 5.11 16 17 H 0.05 2.18 7.57 -2.39 -0.02 2.16 16 18 N -0.70 -23.11 4.86 -445.42 -2.17 -25.27 16 19 C 0.56 19.66 7.70 86.78 0.67 20.33 16 20 O -0.56 -22.13 13.07 -3.87 -0.05 -22.18 16 21 C -0.20 -6.38 5.89 -19.99 -0.12 -6.50 16 22 C -0.04 -1.08 9.64 22.73 0.22 -0.86 16 23 C -0.18 -3.39 10.10 22.33 0.23 -3.17 16 24 C 0.12 2.50 11.17 84.71 0.95 3.45 16 25 N -0.50 -13.67 9.28 -182.85 -1.70 -15.37 16 26 C 0.20 6.23 6.50 42.89 0.28 6.51 16 27 C -0.13 -4.14 4.63 -11.54 -0.05 -4.19 16 28 C -0.15 -3.78 10.02 30.59 0.31 -3.47 16 29 C -0.14 -3.60 10.23 30.60 0.31 -3.28 16 30 H 0.24 15.26 6.77 -92.71 -0.63 14.63 16 31 H 0.35 18.92 6.63 -92.71 -0.61 18.30 16 32 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.40 12.49 6.74 -92.71 -0.63 11.86 16 41 H 0.15 3.27 6.56 -2.91 -0.02 3.25 16 42 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.12 4.19 6.10 -2.39 -0.01 4.17 16 45 H 0.11 2.57 7.54 -2.39 -0.02 2.55 16 46 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -71.38 385.02 1.70 -69.68 By element: Atomic # 1 Polarization: 51.63 SS G_CDS: -0.12 Total: 51.51 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: 4.98 Total: -12.79 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -5.17 Total: -138.98 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -71.38 1.70 -69.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085259708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.230 kcal (2) G-P(sol) polarization free energy of solvation -71.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds