Wall clock time and date at job start Tue Mar 31 2020 15:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99818 * 2 1 4 4 H 1.48503 * 109.47104 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47100 * 299.99396 * 3 2 1 6 6 H 1.48490 * 109.47533 * 59.99633 * 3 2 1 7 7 C 1.37871 * 120.00268 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00492 * 186.39145 * 7 2 1 9 9 C 1.50704 * 120.00094 * 6.39133 * 7 2 1 10 10 H 1.09002 * 109.46945 * 333.94598 * 9 7 2 11 11 C 1.50696 * 109.47275 * 213.93891 * 9 7 2 12 12 O 1.21280 * 120.00182 * 239.99760 * 11 9 7 13 13 N 1.34774 * 120.00075 * 60.00016 * 11 9 7 14 14 C 1.46498 * 120.00090 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.47355 * 180.02562 * 14 13 11 16 16 H 1.08997 * 109.58313 * 294.73398 * 15 14 13 17 17 C 1.53226 * 109.58704 * 174.31869 * 15 14 13 18 18 N 1.47270 * 108.80902 * 240.20044 * 17 15 14 19 19 C 1.47322 * 110.15355 * 60.81159 * 18 17 15 20 20 C 1.53198 * 108.80315 * 299.19468 * 19 18 17 21 21 N 1.47274 * 109.57959 * 54.99907 * 15 14 13 22 22 C 1.47314 * 110.15884 * 180.60946 * 21 15 14 23 23 C 1.47314 * 110.15489 * 299.19450 * 18 17 15 24 24 C 1.50708 * 109.46877 * 93.93886 * 9 7 2 25 25 C 1.38232 * 119.99954 * 53.85140 * 24 9 7 26 26 C 1.38232 * 120.00104 * 179.80982 * 25 24 9 27 27 C 1.38234 * 119.99953 * 0.41666 * 26 25 24 28 28 C 1.38237 * 119.99882 * 359.81633 * 27 26 25 29 29 C 1.38231 * 119.99832 * 234.12073 * 24 9 7 30 30 H 0.97000 * 120.00644 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00227 * 0.02562 * 13 11 9 32 32 H 1.08999 * 109.46934 * 60.00228 * 14 13 11 33 33 H 1.08999 * 109.47450 * 300.00278 * 14 13 11 34 34 H 1.09007 * 109.58082 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.57952 * 120.39813 * 17 15 14 36 36 H 1.09002 * 109.57934 * 179.39909 * 19 18 17 37 37 H 1.08996 * 109.58161 * 58.99153 * 19 18 17 38 38 H 1.09005 * 109.58381 * 240.19946 * 20 19 18 39 39 H 1.08997 * 109.69731 * 119.85912 * 20 19 18 40 40 H 1.09008 * 109.57907 * 58.98973 * 22 21 15 41 41 H 1.08996 * 109.58416 * 179.39477 * 22 21 15 42 42 H 1.08996 * 109.58323 * 180.60407 * 23 18 17 43 43 H 1.08994 * 109.58101 * 301.01076 * 23 18 17 44 44 H 1.08001 * 120.00042 * 359.97438 * 25 24 9 45 45 H 1.08003 * 120.00515 * 180.20779 * 26 25 24 46 46 H 1.08001 * 120.00426 * 179.78834 * 27 26 25 47 47 H 1.08000 * 120.00219 * 179.97438 * 28 27 26 48 48 H 1.07996 * 120.00466 * 359.97438 * 29 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1969 0.1047 9 6 1.2581 -2.4952 -0.1442 10 1 0.2375 -2.3708 0.2179 11 6 1.9505 -3.5638 0.6618 12 8 2.3790 -4.5561 0.1118 13 7 2.0934 -3.4169 1.9938 14 6 2.7660 -4.4560 2.7774 15 6 2.7939 -4.0457 4.2511 16 1 3.4118 -3.1559 4.3710 17 6 3.3682 -5.1905 5.0923 18 7 2.3542 -5.6146 6.0724 19 6 1.1468 -6.0949 5.3781 20 6 0.5726 -4.9504 4.5371 21 7 1.4238 -3.7605 4.7101 22 6 1.4374 -3.3498 6.1247 23 6 2.0119 -4.4944 6.9657 24 6 1.2302 -2.8995 -1.5957 25 6 2.4100 -2.9925 -2.3100 26 6 2.3848 -3.3672 -3.6404 27 6 1.1791 -3.6406 -4.2587 28 6 -0.0011 -3.5429 -3.5457 29 6 0.0244 -3.1720 -2.2142 30 1 -0.4851 0.8400 -0.0004 31 1 1.7503 -2.6234 2.4339 32 1 3.7865 -4.5807 2.4153 33 1 2.2258 -5.3969 2.6728 34 1 3.6218 -6.0289 4.4435 35 1 4.2608 -4.8473 5.6152 36 1 0.4072 -6.4162 6.1115 37 1 1.4070 -6.9307 4.7286 38 1 -0.4410 -4.7258 4.8693 39 1 0.5570 -5.2388 3.4861 40 1 2.0599 -2.4626 6.2416 41 1 0.4209 -3.1309 6.4514 42 1 1.2693 -4.8212 7.6935 43 1 2.9082 -4.1531 7.4835 44 1 3.3517 -2.7750 -1.8280 45 1 3.3069 -3.4432 -4.1976 46 1 1.1591 -3.9300 -5.2991 47 1 -0.9432 -3.7560 -4.0289 48 1 -0.8977 -3.0955 -1.6573 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365192921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:28 Heat of formation + Delta-G solvation = 14.234079 kcal Electronic energy + Delta-G solvation = -28944.371945 eV Core-core repulsion = 25192.136072 eV Total energy + Delta-G solvation = -3752.235873 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.28575 -39.00166 -37.64905 -34.62145 -33.59373 -32.90826 -31.36948 -31.25258 -30.98716 -29.91493 -27.63033 -25.90890 -24.08065 -23.65539 -23.39365 -22.02278 -21.56385 -20.67577 -19.19480 -18.10714 -17.22206 -16.89278 -16.68688 -16.20578 -15.84388 -15.47875 -15.00503 -14.48056 -14.39482 -14.05196 -13.76947 -13.31831 -13.25392 -13.18522 -13.15843 -12.88803 -12.54154 -12.44908 -12.41574 -12.23926 -12.13748 -11.81253 -11.62138 -11.36596 -11.05810 -10.95940 -10.76478 -10.68682 -10.56146 -10.36117 -10.24764 -9.99008 -9.92782 -9.39791 -8.74437 -8.54608 -8.21155 -7.92707 -7.84287 -7.58096 -6.24275 -4.28667 2.39650 2.42838 3.20626 3.29716 3.32998 3.50913 3.79975 3.93943 4.15219 4.32055 4.49970 4.55561 4.72392 4.77315 4.89965 5.00714 5.13666 5.21689 5.30926 5.33655 5.37275 5.42343 5.56390 5.63017 5.68259 5.73810 5.75791 5.81307 5.82368 5.91092 5.95201 6.04684 6.24242 6.38662 6.47144 6.50658 6.54856 6.63702 6.90834 6.98519 7.00603 7.00877 7.22205 7.35214 7.38940 7.47578 7.66441 7.80053 7.99005 8.11563 8.54216 8.75814 9.32700 9.38599 10.84525 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.003883 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.555093 B = 7208.930443 C = 8559.280284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.075 3.925 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.049 3.951 10 H 0.091 0.909 11 C 0.526 3.474 12 O -0.575 6.575 13 N -0.718 5.718 14 C 0.135 3.865 15 C 0.030 3.970 16 H 0.095 0.905 17 C 0.018 3.982 18 N -0.516 5.516 19 C 0.010 3.990 20 C 0.008 3.992 21 N -0.504 5.504 22 C 0.012 3.988 23 C 0.010 3.990 24 C -0.010 4.010 25 C -0.084 4.084 26 C -0.135 4.135 27 C -0.150 4.150 28 C -0.132 4.132 29 C -0.121 4.121 30 H 0.266 0.734 31 H 0.413 0.587 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 -7.440 10.446 12.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.129 4.129 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.028 3.972 10 H 0.109 0.891 11 C 0.316 3.684 12 O -0.455 6.455 13 N -0.371 5.371 14 C 0.009 3.991 15 C -0.080 4.080 16 H 0.113 0.887 17 C -0.112 4.112 18 N -0.237 5.237 19 C -0.119 4.119 20 C -0.122 4.122 21 N -0.225 5.225 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.011 4.011 25 C -0.103 4.103 26 C -0.153 4.153 27 C -0.168 4.168 28 C -0.150 4.150 29 C -0.139 4.139 30 H 0.076 0.924 31 H 0.249 0.751 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.832 -8.014 10.071 13.001 hybrid contribution 0.232 1.428 0.158 1.455 sum 2.064 -6.586 10.229 12.340 Atomic orbital electron populations 1.69887 1.06000 1.27247 1.48349 1.24937 0.94856 0.99386 0.93746 0.86473 0.80270 0.83214 0.77754 1.19542 1.20748 1.20849 1.20690 0.93401 0.88660 1.52159 0.92042 1.18117 0.99812 0.91835 0.87423 0.89111 1.21594 0.78036 0.87064 0.81720 1.90570 1.51418 1.32313 1.71167 1.45787 1.60309 1.23362 1.07632 1.21221 0.97810 0.92026 0.88010 1.22734 0.90813 0.99343 0.95150 0.88673 1.22898 0.95366 0.98271 0.94714 1.63926 1.09814 1.31748 1.18224 1.22903 0.92690 0.98226 0.98129 1.22938 0.97428 0.89864 1.01942 1.63812 1.09010 1.32090 1.17602 1.22907 1.02637 0.98211 0.88070 1.22910 1.01614 0.91520 0.95971 1.20080 0.92042 0.91709 0.97267 1.20827 0.98350 0.97870 0.93214 1.20958 0.97025 1.01886 0.95435 1.20792 0.93063 1.04062 0.98853 1.20902 0.97206 1.02051 0.94879 1.21003 0.97845 1.00364 0.94682 0.92447 0.75106 0.91783 0.92504 0.89624 0.89879 0.90300 0.90121 0.90162 0.89288 0.90012 0.90028 0.90317 0.90267 0.87127 0.87620 0.87742 0.87586 0.87028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.38 12.78 55.43 0.71 -22.67 16 2 C 0.08 1.93 5.45 -17.82 -0.10 1.83 16 3 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -12.90 7.46 -34.44 -0.26 -13.16 16 8 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 9 C 0.05 1.18 2.44 -94.07 -0.23 0.95 16 10 H 0.09 2.33 7.00 -51.93 -0.36 1.97 16 11 C 0.53 11.78 7.04 -10.99 -0.08 11.70 16 12 O -0.57 -14.05 15.42 5.56 0.09 -13.96 16 13 N -0.72 -13.36 5.29 -60.30 -0.32 -13.68 16 14 C 0.13 2.04 4.32 -4.04 -0.02 2.02 16 15 C 0.03 0.37 2.59 -67.39 -0.17 0.19 16 16 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 17 C 0.02 0.19 5.80 -3.50 -0.02 0.17 16 18 N -0.52 -5.40 5.44 -233.19 -1.27 -6.67 16 19 C 0.01 0.11 6.13 -3.49 -0.02 0.09 16 20 C 0.01 0.09 5.74 -3.49 -0.02 0.07 16 21 N -0.50 -6.22 4.69 -225.24 -1.06 -7.27 16 22 C 0.01 0.12 6.13 -3.49 -0.02 0.10 16 23 C 0.01 0.09 6.13 -3.49 -0.02 0.07 16 24 C -0.01 -0.24 4.30 -104.62 -0.45 -0.69 16 25 C -0.08 -1.93 8.31 -39.59 -0.33 -2.26 16 26 C -0.13 -2.70 10.05 -39.58 -0.40 -3.10 16 27 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 28 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 29 C -0.12 -2.68 9.67 -39.58 -0.38 -3.06 16 30 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.41 7.81 8.03 -40.82 -0.33 7.48 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.89 6.60 -51.93 -0.34 0.55 16 34 H 0.09 0.91 7.61 -51.93 -0.40 0.52 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.21 6.30 -51.93 -0.33 0.88 16 40 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.11 2.55 7.89 -52.49 -0.41 2.14 16 45 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 46 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 48 H 0.11 2.39 7.95 -52.49 -0.42 1.97 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -29.02 379.28 -12.10 -41.12 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -7.63 Total: 13.53 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.31 Total: -11.27 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -1.94 Total: -50.29 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.09 Total: -13.96 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.02 -12.10 -41.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365192921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.352 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds