Wall clock time and date at job start Tue Mar 31 2020 16:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00249 * 2 1 4 4 H 1.48502 * 109.47400 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46938 * 299.99665 * 3 2 1 6 6 H 1.48502 * 109.46922 * 59.99696 * 3 2 1 7 7 C 1.38820 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00249 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99596 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99887 * 185.64091 * 9 7 2 11 11 C 1.53006 * 110.01642 * 57.08124 * 10 9 7 12 12 N 1.46497 * 109.47110 * 56.98177 * 11 10 9 13 13 C 1.34776 * 119.99893 * 184.73212 * 12 11 10 14 14 O 1.21555 * 120.00059 * 0.02562 * 13 12 11 15 15 C 1.47844 * 119.99897 * 180.02562 * 13 12 11 16 16 C 1.40017 * 120.56047 * 354.40831 * 15 13 12 17 17 C 1.38361 * 118.29144 * 180.02562 * 16 15 13 18 18 C 1.38349 * 119.30086 * 0.27946 * 17 16 15 19 19 N 1.31936 * 121.07751 * 359.42367 * 18 17 16 20 20 C 1.31688 * 121.87852 * 0.59271 * 19 18 17 21 21 C 1.50706 * 119.71622 * 179.68283 * 20 19 18 22 22 C 1.53004 * 117.49580 * 357.78234 * 21 20 19 23 23 C 1.52997 * 117.49350 * 289.16187 * 21 20 19 24 24 C 1.54272 * 110.07482 * 178.49357 * 10 9 7 25 25 C 1.54893 * 104.19186 * 95.70017 * 24 10 9 26 26 C 1.54888 * 102.74922 * 37.94556 * 25 24 10 27 27 C 1.53876 * 110.03631 * 295.68924 * 10 9 7 28 28 H 0.96995 * 120.00201 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00066 * 5.65047 * 9 7 2 30 30 H 1.09008 * 109.46863 * 296.98643 * 11 10 9 31 31 H 1.09001 * 109.47351 * 176.98620 * 11 10 9 32 32 H 0.96999 * 120.00354 * 4.73126 * 12 11 10 33 33 H 1.08004 * 120.85455 * 0.04452 * 16 15 13 34 34 H 1.08003 * 120.34744 * 180.02562 * 17 16 15 35 35 H 1.07998 * 119.46131 * 179.70198 * 18 17 16 36 36 H 1.08997 * 115.55138 * 143.48923 * 21 20 19 37 37 H 1.08999 * 117.50090 * 359.97438 * 22 21 20 38 38 H 1.09001 * 117.49593 * 145.02472 * 22 21 20 39 39 H 1.09005 * 117.49770 * 214.97966 * 23 21 20 40 40 H 1.08998 * 117.50021 * 359.97328 * 23 21 20 41 41 H 1.08998 * 110.48673 * 214.37857 * 24 10 9 42 42 H 1.08997 * 110.48481 * 337.02308 * 24 10 9 43 43 H 1.08996 * 110.75506 * 279.62738 * 25 24 10 44 44 H 1.08993 * 110.75115 * 156.25960 * 25 24 10 45 45 H 1.09001 * 110.48474 * 203.37744 * 26 25 24 46 46 H 1.08995 * 110.48998 * 80.73425 * 26 25 24 47 47 H 1.08996 * 110.02661 * 359.94996 * 27 10 9 48 48 H 1.09000 * 110.03185 * 121.37880 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0527 -3.6536 0.1269 11 6 2.8854 -3.6544 1.4105 12 7 2.0095 -3.4187 2.5609 13 6 2.5378 -3.2821 3.7933 14 8 3.7410 -3.3541 3.9501 15 6 1.6538 -3.0448 4.9543 16 6 0.2799 -2.8438 4.7738 17 6 -0.5035 -2.6253 5.8931 18 6 0.0907 -2.6068 7.1423 19 7 1.3875 -2.8049 7.2827 20 6 2.1746 -3.0167 6.2484 21 6 3.6508 -3.2303 6.4644 22 6 4.1756 -3.1373 7.8986 23 6 4.4834 -2.0220 6.8974 24 6 1.0608 -4.8352 0.1398 25 6 1.0232 -5.3156 -1.3322 26 6 2.4975 -5.1596 -1.7805 27 6 2.9662 -3.8599 -1.0941 28 1 -0.4850 0.8400 -0.0004 29 1 0.3589 -2.3902 -0.0807 30 1 3.6356 -2.8653 1.3573 31 1 3.3801 -4.6192 1.5221 32 1 1.0493 -3.3609 2.4357 33 1 -0.1570 -2.8593 3.7862 34 1 -1.5671 -2.4668 5.7922 35 1 -0.5177 -2.4316 8.0173 36 1 4.1228 -3.9554 5.8014 37 1 3.4533 -2.9212 8.6858 38 1 4.9931 -3.8013 8.1793 39 1 5.5034 -1.9522 6.5195 40 1 3.9636 -1.0725 7.0256 41 1 1.4232 -5.6303 0.7915 42 1 0.0732 -4.5008 0.4574 43 1 0.3686 -4.6806 -1.9291 44 1 0.7100 -6.3580 -1.3904 45 1 2.5584 -5.0618 -2.8644 46 1 3.0919 -6.0070 -1.4390 47 1 2.8677 -3.0187 -1.7802 48 1 4.0027 -3.9604 -0.7722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753665821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:14 Heat of formation + Delta-G solvation = 32.149311 kcal Electronic energy + Delta-G solvation = -28837.942515 eV Core-core repulsion = 25086.483505 eV Total energy + Delta-G solvation = -3751.459011 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.68926 -39.08847 -37.96762 -36.74227 -34.16985 -33.41243 -32.46389 -31.15134 -30.56673 -28.36347 -27.88043 -25.17779 -24.38541 -23.80694 -23.04007 -22.13447 -20.81824 -20.58383 -19.91980 -18.75010 -17.53115 -17.00814 -16.87522 -16.25131 -15.59252 -15.27800 -14.96495 -14.73605 -14.68647 -14.25221 -14.07893 -13.92953 -13.59809 -13.28090 -13.15662 -12.81492 -12.64659 -12.43449 -12.00125 -11.73816 -11.55204 -11.36031 -11.07330 -10.85516 -10.75128 -10.66102 -10.63439 -10.55606 -10.38286 -10.33077 -10.12692 -9.86670 -9.81192 -9.75628 -9.69107 -9.13774 -8.94982 -8.86592 -8.42013 -7.06072 -5.85486 -3.14362 0.74639 1.20156 3.14781 3.38586 3.46766 3.47383 3.58667 3.80359 4.15651 4.23107 4.53196 4.65867 4.78854 4.88853 5.03000 5.05455 5.14292 5.17974 5.18633 5.25795 5.31633 5.47629 5.52620 5.63927 5.68114 5.71861 5.81143 5.89888 5.92948 5.99749 6.03819 6.05772 6.09055 6.09447 6.18952 6.27480 6.31378 6.37561 6.41937 6.51774 6.58617 6.62262 6.67394 6.78577 6.94929 7.08021 7.68540 7.88861 8.01124 8.33212 8.62947 9.45625 9.98576 10.34186 11.36599 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.009914 B = 0.004266 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.654975 B = 6562.133376 C = 7532.484986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.188 3.812 11 C 0.121 3.879 12 N -0.692 5.692 13 C 0.558 3.442 14 O -0.540 6.540 15 C -0.174 4.174 16 C -0.035 4.035 17 C -0.186 4.186 18 C 0.119 3.881 19 N -0.491 5.491 20 C 0.212 3.788 21 C -0.107 4.107 22 C -0.171 4.171 23 C -0.152 4.152 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.131 4.131 28 H 0.254 0.746 29 H 0.384 0.616 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.400 0.600 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.158 0.842 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 -10.548 8.902 13.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.204 4.204 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.353 5.353 10 C 0.096 3.904 11 C -0.005 4.005 12 N -0.341 5.341 13 C 0.343 3.657 14 O -0.419 6.419 15 C -0.179 4.179 16 C -0.061 4.061 17 C -0.206 4.206 18 C -0.038 4.038 19 N -0.199 5.199 20 C 0.074 3.926 21 C -0.125 4.125 22 C -0.208 4.208 23 C -0.190 4.190 24 C -0.163 4.163 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.172 4.172 28 H 0.064 0.936 29 H 0.218 0.782 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.236 0.764 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.160 0.840 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.392 -10.434 9.820 14.395 hybrid contribution -0.912 1.276 -1.078 1.903 sum 0.480 -9.157 8.742 12.669 Atomic orbital electron populations 1.69644 1.04985 1.25509 1.57818 1.24665 0.95405 0.97463 1.02837 0.86238 0.79099 0.84514 0.77122 1.20523 1.21914 1.21989 1.19130 0.91036 0.83763 1.42279 0.91218 1.42527 1.06064 0.99459 1.87268 1.20477 0.91272 0.87287 0.91375 1.21943 0.93355 0.99769 0.85385 1.45634 1.11306 1.71048 1.06157 1.17902 0.87543 0.77372 0.82839 1.90681 1.14602 1.51674 1.84992 1.20837 0.94613 1.07165 0.95288 1.21892 0.92352 0.91808 1.00089 1.22085 1.01705 1.03454 0.93366 1.22896 0.90761 0.93060 0.97099 1.67460 1.05391 1.13357 1.33713 1.20511 0.94791 0.90285 0.86994 1.21204 0.88589 1.03924 0.98816 1.22983 1.02965 1.02009 0.92843 1.22819 1.00408 0.93102 1.02672 1.22609 0.99544 0.97384 0.96782 1.22412 0.97023 0.99833 0.96398 1.22307 0.96069 0.97838 0.99618 1.22707 0.98503 0.97558 0.98400 0.93641 0.78180 0.91210 0.92924 0.76446 0.83952 0.84190 0.82469 0.84001 0.87860 0.88942 0.88364 0.89291 0.91715 0.91560 0.91312 0.92554 0.92435 0.92536 0.90122 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.19 13.07 55.49 0.73 -25.46 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 22.07 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.23 -5.85 8.55 -15.06 -0.13 -5.98 16 8 H 0.07 1.80 7.33 -52.49 -0.38 1.42 16 9 N -0.71 -15.44 4.71 -46.19 -0.22 -15.66 16 10 C 0.19 3.27 0.68 -130.70 -0.09 3.18 16 11 C 0.12 2.16 3.97 -4.04 -0.02 2.14 16 12 N -0.69 -11.95 5.17 -61.25 -0.32 -12.27 16 13 C 0.56 10.06 7.74 -12.33 -0.10 9.97 16 14 O -0.54 -10.77 13.42 5.32 0.07 -10.70 16 15 C -0.17 -2.81 5.89 -104.82 -0.62 -3.43 16 16 C -0.04 -0.49 9.64 -38.87 -0.37 -0.86 16 17 C -0.19 -2.17 10.10 -39.50 -0.40 -2.57 16 18 C 0.12 1.41 11.17 -17.47 -0.20 1.21 16 19 N -0.49 -7.07 9.28 -9.14 -0.08 -7.16 16 20 C 0.21 3.36 6.50 -82.17 -0.53 2.82 16 21 C -0.11 -1.62 4.60 -91.77 -0.42 -2.04 16 22 C -0.17 -2.15 10.02 -26.73 -0.27 -2.41 16 23 C -0.15 -2.12 10.23 -26.73 -0.27 -2.40 16 24 C -0.13 -1.81 5.49 -25.07 -0.14 -1.95 16 25 C -0.12 -1.61 6.91 -24.74 -0.17 -1.78 16 26 C -0.12 -1.65 6.83 -25.07 -0.17 -1.82 16 27 C -0.13 -2.18 5.97 -25.61 -0.15 -2.34 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.38 8.92 7.47 -40.82 -0.30 8.62 16 30 H 0.07 1.45 7.38 -51.92 -0.38 1.06 16 31 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.40 6.55 6.13 -40.82 -0.25 6.30 16 33 H 0.14 1.86 6.56 -52.48 -0.34 1.52 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.14 2.31 6.15 -51.93 -0.32 1.99 16 37 H 0.10 1.30 7.54 -51.93 -0.39 0.91 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 0.86 7.81 -51.93 -0.41 0.45 16 42 H 0.07 0.97 7.75 -51.93 -0.40 0.56 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.55 7.52 -51.93 -0.39 1.16 16 48 H 0.05 0.83 7.67 -51.93 -0.40 0.44 16 LS Contribution 385.14 15.07 5.80 5.80 Total: -1.00 -29.61 385.14 -10.52 -40.13 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -7.34 Total: 16.82 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -4.14 Total: -8.55 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.11 Total: -60.55 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.07 Total: -10.70 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.61 -10.52 -40.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753665821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.280 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds