Wall clock time and date at job start Tue Mar 31 2020 16:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86800 * 120.00249 * 2 1 4 4 H 1.48502 * 109.47400 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46938 * 299.99665 * 3 2 1 6 6 H 1.48502 * 109.46922 * 59.99696 * 3 2 1 7 7 C 1.38820 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00249 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99596 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99887 * 185.64091 * 9 7 2 11 11 C 1.53006 * 110.01642 * 57.08124 * 10 9 7 12 12 N 1.46497 * 109.47110 * 56.98177 * 11 10 9 13 13 C 1.34776 * 119.99893 * 184.73212 * 12 11 10 14 14 O 1.21555 * 120.00059 * 0.02562 * 13 12 11 15 15 C 1.47844 * 119.99897 * 180.02562 * 13 12 11 16 16 C 1.40017 * 120.56047 * 354.40831 * 15 13 12 17 17 C 1.38361 * 118.29144 * 180.02562 * 16 15 13 18 18 C 1.38349 * 119.30086 * 0.27946 * 17 16 15 19 19 N 1.31936 * 121.07751 * 359.42367 * 18 17 16 20 20 C 1.31688 * 121.87852 * 0.59271 * 19 18 17 21 21 C 1.50706 * 119.71622 * 179.68283 * 20 19 18 22 22 C 1.53004 * 117.49580 * 357.78234 * 21 20 19 23 23 C 1.52997 * 117.49350 * 289.16187 * 21 20 19 24 24 C 1.54272 * 110.07482 * 178.49357 * 10 9 7 25 25 C 1.54893 * 104.19186 * 95.70017 * 24 10 9 26 26 C 1.54888 * 102.74922 * 37.94556 * 25 24 10 27 27 C 1.53876 * 110.03631 * 295.68924 * 10 9 7 28 28 H 0.96995 * 120.00201 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00066 * 5.65047 * 9 7 2 30 30 H 1.09008 * 109.46863 * 296.98643 * 11 10 9 31 31 H 1.09001 * 109.47351 * 176.98620 * 11 10 9 32 32 H 0.96999 * 120.00354 * 4.73126 * 12 11 10 33 33 H 1.08004 * 120.85455 * 0.04452 * 16 15 13 34 34 H 1.08003 * 120.34744 * 180.02562 * 17 16 15 35 35 H 1.07998 * 119.46131 * 179.70198 * 18 17 16 36 36 H 1.08997 * 115.55138 * 143.48923 * 21 20 19 37 37 H 1.08999 * 117.50090 * 359.97438 * 22 21 20 38 38 H 1.09001 * 117.49593 * 145.02472 * 22 21 20 39 39 H 1.09005 * 117.49770 * 214.97966 * 23 21 20 40 40 H 1.08998 * 117.50021 * 359.97328 * 23 21 20 41 41 H 1.08998 * 110.48673 * 214.37857 * 24 10 9 42 42 H 1.08997 * 110.48481 * 337.02308 * 24 10 9 43 43 H 1.08996 * 110.75506 * 279.62738 * 25 24 10 44 44 H 1.08993 * 110.75115 * 156.25960 * 25 24 10 45 45 H 1.09001 * 110.48474 * 203.37744 * 26 25 24 46 46 H 1.08995 * 110.48998 * 80.73425 * 26 25 24 47 47 H 1.08996 * 110.02661 * 359.94996 * 27 10 9 48 48 H 1.09000 * 110.03185 * 121.37880 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0527 -3.6536 0.1269 11 6 2.8854 -3.6544 1.4105 12 7 2.0095 -3.4187 2.5609 13 6 2.5378 -3.2821 3.7933 14 8 3.7410 -3.3541 3.9501 15 6 1.6538 -3.0448 4.9543 16 6 0.2799 -2.8438 4.7738 17 6 -0.5035 -2.6253 5.8931 18 6 0.0907 -2.6068 7.1423 19 7 1.3875 -2.8049 7.2827 20 6 2.1746 -3.0167 6.2484 21 6 3.6508 -3.2303 6.4644 22 6 4.1756 -3.1373 7.8986 23 6 4.4834 -2.0220 6.8974 24 6 1.0608 -4.8352 0.1398 25 6 1.0232 -5.3156 -1.3322 26 6 2.4975 -5.1596 -1.7805 27 6 2.9662 -3.8599 -1.0941 28 1 -0.4850 0.8400 -0.0004 29 1 0.3589 -2.3902 -0.0807 30 1 3.6356 -2.8653 1.3573 31 1 3.3801 -4.6192 1.5221 32 1 1.0493 -3.3609 2.4357 33 1 -0.1570 -2.8593 3.7862 34 1 -1.5671 -2.4668 5.7922 35 1 -0.5177 -2.4316 8.0173 36 1 4.1228 -3.9554 5.8014 37 1 3.4533 -2.9212 8.6858 38 1 4.9931 -3.8013 8.1793 39 1 5.5034 -1.9522 6.5195 40 1 3.9636 -1.0725 7.0256 41 1 1.4232 -5.6303 0.7915 42 1 0.0732 -4.5008 0.4574 43 1 0.3686 -4.6806 -1.9291 44 1 0.7100 -6.3580 -1.3904 45 1 2.5584 -5.0618 -2.8644 46 1 3.0919 -6.0070 -1.4390 47 1 2.8677 -3.0187 -1.7802 48 1 4.0027 -3.9604 -0.7722 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753665821.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:13 Heat of formation + Delta-G solvation = 15.117518 kcal Electronic energy + Delta-G solvation = -28838.681069 eV Core-core repulsion = 25086.483505 eV Total energy + Delta-G solvation = -3752.197565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.84388 -40.42713 -39.32551 -37.81828 -35.59725 -35.16656 -33.63050 -32.39437 -32.09936 -29.62799 -29.41244 -26.57956 -25.44219 -25.41381 -24.44978 -23.20119 -22.01378 -21.75049 -21.17971 -20.18700 -19.12720 -18.59387 -17.96364 -17.50915 -16.98256 -16.49082 -16.33157 -16.10320 -15.90726 -15.80196 -15.36012 -15.18270 -14.97259 -14.73712 -14.52105 -14.08890 -13.89559 -13.56081 -13.46412 -13.26218 -12.95771 -12.85593 -12.59383 -12.38431 -12.27405 -12.12669 -11.84349 -11.80109 -11.72369 -11.54971 -11.45018 -11.38871 -11.30940 -10.95880 -10.92429 -10.90172 -10.33532 -10.05340 -9.74627 -8.95831 -7.93128 -5.17520 -0.35401 0.15347 1.39315 1.43744 1.49259 1.88016 2.25100 2.54195 2.67450 3.07888 3.18310 3.38807 3.59356 3.72957 3.76023 3.81517 3.85388 3.95033 4.03169 4.11734 4.15585 4.20118 4.25891 4.42182 4.49659 4.57113 4.67303 4.68925 4.75480 4.76731 4.86113 4.96123 4.98168 5.02405 5.03568 5.06276 5.13857 5.19962 5.22749 5.28242 5.32881 5.41440 5.45733 5.56321 5.61478 5.63543 5.69869 6.31381 6.58723 6.87734 7.24025 7.39302 8.12417 8.37502 9.29335 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.009914 B = 0.004266 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.654975 B = 6562.133376 C = 7532.484986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.942 3.058 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.301 1.301 7 C -0.210 4.210 8 H 0.060 0.940 9 N -0.713 5.713 10 C 0.184 3.816 11 C 0.129 3.871 12 N -0.690 5.690 13 C 0.552 3.448 14 O -0.567 6.567 15 C -0.200 4.200 16 C -0.043 4.043 17 C -0.176 4.176 18 C 0.124 3.876 19 N -0.502 5.502 20 C 0.199 3.801 21 C -0.127 4.127 22 C -0.144 4.144 23 C -0.159 4.159 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.132 4.132 28 H 0.248 0.752 29 H 0.377 0.623 30 H 0.034 0.966 31 H 0.069 0.931 32 H 0.404 0.596 33 H 0.146 0.854 34 H 0.176 0.824 35 H 0.199 0.801 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.049 0.951 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.888 -12.169 10.004 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.253 4.253 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.229 1.229 7 C -0.343 4.343 8 H 0.078 0.922 9 N -0.354 5.354 10 C 0.093 3.907 11 C 0.003 3.997 12 N -0.339 5.339 13 C 0.339 3.661 14 O -0.449 6.449 15 C -0.206 4.206 16 C -0.069 4.069 17 C -0.196 4.196 18 C -0.033 4.033 19 N -0.211 5.211 20 C 0.061 3.939 21 C -0.146 4.146 22 C -0.181 4.181 23 C -0.197 4.197 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.151 4.151 27 C -0.172 4.172 28 H 0.057 0.943 29 H 0.210 0.790 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.241 0.759 33 H 0.163 0.837 34 H 0.193 0.807 35 H 0.216 0.784 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.068 0.932 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.458 -12.089 10.910 16.291 hybrid contribution -0.601 1.726 -1.376 2.288 sum -0.143 -10.363 9.534 14.082 Atomic orbital electron populations 1.69731 1.05653 1.25310 1.60135 1.25131 0.96038 0.99506 1.04661 0.85526 0.78292 0.82283 0.76451 1.20369 1.22087 1.22884 1.19227 0.90689 0.85069 1.39267 0.92167 1.42575 1.05729 1.00065 1.86996 1.20737 0.92001 0.86660 0.91303 1.21822 0.92832 0.99258 0.85809 1.45606 1.11390 1.71004 1.05913 1.18312 0.87592 0.76689 0.83476 1.90658 1.15826 1.52905 1.85478 1.20763 0.95427 1.09697 0.94678 1.22060 0.91693 0.91898 1.01287 1.22481 1.03194 1.01534 0.92362 1.23643 0.90136 0.90841 0.98718 1.67516 1.06573 1.13917 1.33126 1.20592 0.95221 0.90806 0.87237 1.21140 0.88834 1.04221 1.00408 1.23025 1.02883 1.00770 0.91422 1.22835 1.00314 0.92846 1.03721 1.22569 0.98502 0.96313 0.98185 1.22401 0.96556 1.01244 0.95010 1.22290 0.96375 0.96584 0.99822 1.22638 0.98736 0.98363 0.97467 0.94320 0.79004 0.94787 0.91250 0.75924 0.83662 0.80665 0.78425 0.85806 0.87581 0.86921 0.88040 0.90099 0.89731 0.91628 0.92848 0.89582 0.91711 0.90266 0.93231 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.69 13.07 21.65 0.28 -54.41 16 2 C -0.06 -3.32 5.50 84.87 0.47 -2.85 16 3 Si 0.94 46.27 29.55 68.60 2.03 48.30 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 7 C -0.21 -10.86 8.55 84.04 0.72 -10.14 16 8 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 9 N -0.71 -31.32 4.71 -300.06 -1.41 -32.74 16 10 C 0.18 6.32 0.68 4.33 0.00 6.32 16 11 C 0.13 4.62 3.97 86.38 0.34 4.96 16 12 N -0.69 -24.12 5.17 -465.96 -2.41 -26.53 16 13 C 0.55 20.45 7.74 86.79 0.67 21.12 16 14 O -0.57 -23.53 13.42 -3.89 -0.05 -23.59 16 15 C -0.20 -6.51 5.89 -19.99 -0.12 -6.63 16 16 C -0.04 -1.16 9.64 22.73 0.22 -0.94 16 17 C -0.18 -3.61 10.10 22.33 0.23 -3.39 16 18 C 0.12 2.56 11.17 84.70 0.95 3.50 16 19 N -0.50 -13.70 9.28 -182.84 -1.70 -15.39 16 20 C 0.20 6.26 6.50 42.89 0.28 6.54 16 21 C -0.13 -3.91 4.60 -11.54 -0.05 -3.97 16 22 C -0.14 -3.48 10.02 30.60 0.31 -3.17 16 23 C -0.16 -4.49 10.23 30.59 0.31 -4.17 16 24 C -0.12 -3.18 5.49 31.67 0.17 -3.01 16 25 C -0.11 -2.80 6.91 31.89 0.22 -2.58 16 26 C -0.11 -2.83 6.83 31.67 0.22 -2.61 16 27 C -0.13 -4.32 5.97 31.32 0.19 -4.13 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.38 17.68 7.47 -92.70 -0.69 16.99 16 30 H 0.03 1.46 7.38 -2.38 -0.02 1.44 16 31 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 32 H 0.40 13.29 6.13 -92.71 -0.57 12.72 16 33 H 0.15 3.70 6.56 -2.91 -0.02 3.68 16 34 H 0.18 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.20 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.12 4.22 6.15 -2.39 -0.01 4.20 16 37 H 0.11 2.52 7.54 -2.39 -0.02 2.50 16 38 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.08 1.99 7.81 -2.39 -0.02 1.97 16 42 H 0.07 1.81 7.75 -2.39 -0.02 1.79 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.05 1.93 7.52 -2.39 -0.02 1.91 16 48 H 0.06 1.78 7.67 -2.39 -0.02 1.76 16 Total: -1.00 -66.00 385.14 1.58 -64.43 By element: Atomic # 1 Polarization: 45.34 SS G_CDS: -0.28 Total: 45.07 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.12 Total: -5.13 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.24 Total: -129.07 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.59 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -66.00 1.58 -64.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753665821.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.544 kcal (2) G-P(sol) polarization free energy of solvation -66.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds