Wall clock time and date at job start Tue Mar 31 2020 15:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08999 * 109.47567 * 2 1 4 4 C 1.52999 * 109.47154 * 239.99502 * 2 1 3 5 5 N 1.46501 * 109.46881 * 65.00239 * 4 2 1 6 6 C 1.36936 * 119.99846 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00165 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99943 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00268 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00137 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47172 * 60.00089 * 10 8 6 12 12 H 1.48501 * 109.47186 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.46890 * 299.99697 * 10 8 6 14 14 C 1.53003 * 109.46990 * 119.99829 * 2 1 3 15 15 N 1.46497 * 109.47385 * 294.99982 * 14 2 1 16 16 C 1.34775 * 120.00276 * 180.02562 * 15 14 2 17 17 O 1.21274 * 119.99873 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99875 * 179.97438 * 16 15 14 19 19 C 1.50698 * 109.47116 * 179.97438 * 18 16 15 20 20 C 1.34244 * 126.50201 * 264.97783 * 19 18 16 21 21 N 1.36833 * 109.93092 * 180.02562 * 20 19 18 22 22 C 1.46499 * 125.06296 * 180.02562 * 21 20 19 23 23 C 1.37692 * 109.87406 * 0.26052 * 21 20 19 24 24 C 1.39121 * 133.50130 * 180.46554 * 23 21 20 25 25 C 1.37756 * 119.77586 * 179.54775 * 24 23 21 26 26 C 1.38822 * 120.66581 * 359.75994 * 25 24 23 27 27 C 1.36632 * 120.53342 * 359.97438 * 26 25 24 28 28 C 1.39629 * 119.76073 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.47136 * 59.99930 * 1 2 3 30 30 H 1.08999 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47144 * 300.00419 * 1 2 3 32 32 H 1.09000 * 109.47552 * 185.00087 * 4 2 1 33 33 H 1.09002 * 109.47528 * 305.00638 * 4 2 1 34 34 H 0.97002 * 120.00028 * 0.02562 * 5 4 2 35 35 H 0.96998 * 120.00609 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.47368 * 174.99531 * 14 2 1 37 37 H 1.09004 * 109.47350 * 55.00108 * 14 2 1 38 38 H 0.97008 * 119.99820 * 359.97438 * 15 14 2 39 39 H 1.09003 * 109.47346 * 60.00256 * 18 16 15 40 40 H 1.09001 * 109.47615 * 299.99782 * 18 16 15 41 41 H 1.08003 * 125.03378 * 359.97438 * 20 19 18 42 42 H 1.09002 * 109.47391 * 90.01941 * 22 21 20 43 43 H 1.09001 * 109.46813 * 330.01997 * 22 21 20 44 44 H 1.09004 * 109.47041 * 210.02124 * 22 21 20 45 45 H 1.07994 * 120.11545 * 359.27993 * 24 23 21 46 46 H 1.08002 * 119.66262 * 179.73573 * 25 24 23 47 47 H 1.08007 * 119.73805 * 179.97438 * 26 25 24 48 48 H 1.07990 * 120.12010 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 1.6524 0.0352 -2.4423 6 6 2.0019 -0.4205 -3.6855 7 1 2.5629 -1.3378 -3.7863 8 6 1.6352 0.2967 -4.8160 9 7 0.9510 1.4144 -4.6932 10 14 2.1113 -0.3253 -6.5119 11 1 1.5178 -1.6687 -6.7311 12 1 1.6038 0.6139 -7.5441 13 1 3.5904 -0.4157 -6.6086 14 6 2.0399 -0.7212 1.2493 15 7 1.6524 0.0354 2.4424 16 6 1.9963 -0.4130 3.6660 17 8 2.6263 -1.4431 3.7793 18 6 1.5981 0.3656 4.8932 19 6 2.1003 -0.3448 6.1237 20 6 1.4101 -1.2091 6.8843 21 7 2.1928 -1.6505 7.9163 22 6 1.7698 -2.6034 8.9455 23 6 3.4354 -1.0616 7.8463 24 6 4.5870 -1.1604 8.6206 25 6 5.7047 -0.4305 8.2806 26 6 5.6964 0.4004 7.1685 27 6 4.5782 0.5083 6.3910 28 6 3.4340 -0.2224 6.7172 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.1262 -0.7996 -1.2056 33 1 1.6052 -1.7199 -1.2951 34 1 1.1488 0.8593 -2.3517 35 1 0.6951 1.9157 -5.4831 36 1 3.1263 -0.7996 1.2057 37 1 1.6053 -1.7198 1.2953 38 1 1.1488 0.8595 2.3517 39 1 0.5118 0.4439 4.9373 40 1 2.0328 1.3641 4.8469 41 1 0.3880 -1.5108 6.7084 42 1 1.9965 -3.6176 8.6169 43 1 0.6968 -2.5065 9.1113 44 1 2.3013 -2.3949 9.8741 45 1 4.6032 -1.8037 9.4879 46 1 6.5963 -0.5053 8.8855 47 1 6.5811 0.9662 6.9159 48 1 4.5793 1.1564 5.5271 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753628402.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:55 Heat of formation + Delta-G solvation = 26.859398 kcal Electronic energy + Delta-G solvation = -26696.069264 eV Core-core repulsion = 22944.380866 eV Total energy + Delta-G solvation = -3751.688399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 329.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.56086 -39.50351 -37.23419 -36.77374 -34.29592 -33.90261 -32.44907 -30.52972 -30.49976 -29.81777 -28.62512 -26.55050 -25.70161 -24.76118 -22.82929 -22.44985 -21.62778 -20.66300 -20.03560 -19.38204 -17.35686 -17.01722 -16.78111 -16.65524 -15.83961 -15.67864 -15.52800 -15.31526 -14.62110 -14.41753 -14.16124 -14.03290 -13.74952 -13.57749 -13.24179 -13.14030 -13.04336 -12.93580 -12.60177 -12.51010 -12.33162 -12.08374 -11.97382 -11.53204 -11.46882 -11.03723 -10.96933 -10.87375 -10.66298 -10.53651 -10.38393 -10.07644 -9.87942 -9.68424 -9.53206 -8.91632 -8.85157 -8.32070 -7.73685 -6.90244 -5.75154 -3.03385 0.97792 1.48853 2.39891 2.57826 2.76477 3.39377 3.46008 3.50117 3.51403 3.80609 4.36245 4.48177 4.56180 4.61255 4.71427 4.79708 4.89792 4.95718 5.02466 5.04592 5.07973 5.19639 5.27129 5.32455 5.38032 5.43225 5.54622 5.59779 5.62456 5.70310 5.86311 5.96829 6.00716 6.06308 6.15334 6.28909 6.31748 6.42658 6.48062 6.57363 6.58749 6.62473 6.68254 6.80800 6.90326 7.03272 7.10096 7.61514 7.71916 8.35685 8.44110 9.55206 10.12841 10.47786 11.47778 Molecular weight = 329.18amu Principal moments of inertia in cm(-1) A = 0.024557 B = 0.001835 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.922814 B =15251.709551 C =15777.553782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.128 3.872 15 N -0.729 5.729 16 C 0.508 3.492 17 O -0.532 6.532 18 C -0.065 4.065 19 C -0.150 4.150 20 C 0.063 3.937 21 N -0.488 5.488 22 C 0.081 3.919 23 C 0.096 3.904 24 C -0.131 4.131 25 C -0.102 4.102 26 C -0.149 4.149 27 C -0.066 4.066 28 C -0.089 4.089 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.042 0.958 32 H 0.021 0.979 33 H 0.022 0.978 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.399 0.601 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.166 0.834 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.863 -2.182 32.066 32.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.094 0.906 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.004 3.996 15 N -0.382 5.382 16 C 0.294 3.706 17 O -0.408 6.408 18 C -0.105 4.105 19 C -0.157 4.157 20 C -0.062 4.062 21 N -0.171 5.171 22 C -0.061 4.061 23 C -0.009 4.009 24 C -0.152 4.152 25 C -0.121 4.121 26 C -0.168 4.168 27 C -0.084 4.084 28 C -0.094 4.094 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.234 0.766 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.183 0.817 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.134 0.866 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.251 -3.290 32.244 32.436 hybrid contribution -0.217 0.222 -1.050 1.095 sum 1.034 -3.068 31.194 31.362 Atomic orbital electron populations 1.21783 0.94726 1.01859 1.01445 1.21542 0.96654 1.00478 0.94230 0.90565 1.20582 0.96608 0.94200 0.85436 1.42334 1.66936 1.27674 1.00581 1.19199 1.28667 1.05408 0.83698 0.91224 1.24736 1.01067 0.97432 0.97847 1.69643 1.43556 1.16590 1.28582 0.86250 0.78022 0.77682 0.84139 1.21294 1.21711 1.21274 1.21370 1.00005 0.95193 0.83048 1.46101 1.58134 1.27965 1.05960 1.20659 0.79615 0.85974 0.84372 1.90716 1.39137 1.24379 1.86601 1.19936 1.02214 0.99097 0.89284 1.19514 0.93334 1.04384 0.98514 1.21499 0.97075 0.98037 0.89626 1.43683 1.10308 1.38543 1.24610 1.21912 1.01547 0.92247 0.90414 1.18224 0.86856 0.97592 0.98230 1.19959 0.91314 1.03391 1.00545 1.20768 0.97166 0.96713 0.97439 1.20612 0.98358 1.01307 0.96514 1.20264 0.91447 0.97985 0.98752 1.18983 0.94330 1.00095 0.95949 0.91230 0.92909 0.93861 0.96155 0.96054 0.78210 0.93503 0.91568 0.91596 0.76644 0.88308 0.88239 0.81662 0.91322 0.89957 0.90269 0.86649 0.85966 0.86130 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.94 37.15 0.33 -1.74 16 2 C -0.11 -1.70 2.46 -90.62 -0.22 -1.93 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.22 5.65 -4.04 -0.02 3.20 16 5 N -0.73 -18.45 5.33 -59.91 -0.32 -18.77 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 8 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 10 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.13 1.80 5.06 -4.04 -0.02 1.78 16 15 N -0.73 -8.47 5.28 -60.29 -0.32 -8.79 16 16 C 0.51 6.48 7.82 -10.99 -0.09 6.40 16 17 O -0.53 -9.25 16.03 5.56 0.09 -9.16 16 18 C -0.06 -0.59 6.23 -29.04 -0.18 -0.78 16 19 C -0.15 -1.68 4.81 -102.71 -0.49 -2.17 16 20 C 0.06 0.61 11.21 -16.73 -0.19 0.42 16 21 N -0.49 -4.68 3.18 -121.80 -0.39 -5.07 16 22 C 0.08 0.43 11.03 59.85 0.66 1.09 16 23 C 0.10 1.10 6.81 -83.98 -0.57 0.53 16 24 C -0.13 -1.29 9.97 -39.43 -0.39 -1.68 16 25 C -0.10 -0.94 10.01 -39.54 -0.40 -1.34 16 26 C -0.15 -1.50 9.97 -39.95 -0.40 -1.90 16 27 C -0.07 -0.76 10.05 -39.64 -0.40 -1.16 16 28 C -0.09 -1.11 6.35 -105.13 -0.67 -1.77 16 29 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.50 7.18 -51.93 -0.37 0.13 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.38 10.04 6.85 -40.82 -0.28 9.76 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.40 3.61 7.66 -40.82 -0.31 3.29 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.08 0.33 8.10 -51.93 -0.42 -0.09 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 47 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 48 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -36.07 400.43 -10.14 -46.21 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.65 Total: 7.93 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -3.29 Total: -8.45 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.30 Total: -60.12 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.07 -10.14 -46.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753628402.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.067 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds