Wall clock time and date at job start Tue Mar 31 2020 15:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.58507 * 2 1 4 4 C 1.53187 * 109.58850 * 120.43084 * 2 1 3 5 5 C 1.53043 * 109.31417 * 174.42120 * 4 2 1 6 6 H 1.09000 * 109.45834 * 58.63841 * 5 4 2 7 7 C 1.52993 * 109.45999 * 178.61615 * 5 4 2 8 8 C 1.52993 * 109.47520 * 60.00077 * 7 5 4 9 9 C 1.53006 * 109.46852 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.47182 * 299.99610 * 7 5 4 11 11 C 1.53044 * 109.53640 * 298.63583 * 5 4 2 12 12 C 1.52765 * 109.38384 * 61.24019 * 11 5 4 13 13 N 1.46928 * 109.58330 * 239.72124 * 2 1 3 14 14 C 1.34772 * 120.63125 * 6.58141 * 13 2 1 15 15 O 1.21616 * 120.00209 * 354.83304 * 14 13 2 16 16 C 1.47429 * 119.99895 * 174.83477 * 14 13 2 17 17 C 1.39226 * 120.28504 * 312.53875 * 16 14 13 18 18 C 1.38224 * 120.09394 * 179.97438 * 17 16 14 19 19 C 1.38824 * 120.67585 * 0.02562 * 18 17 16 20 20 C 1.37593 * 120.57290 * 0.02562 * 19 18 17 21 21 C 1.40713 * 119.88240 * 359.97296 * 20 19 18 22 22 C 1.40884 * 120.32967 * 180.02562 * 21 20 19 23 23 H 1.08003 * 120.00048 * 149.71678 * 22 21 20 24 24 C 1.40270 * 119.99782 * 329.72002 * 22 21 20 25 25 N 1.30619 * 120.00280 * 347.17926 * 24 22 21 26 26 Si 1.86805 * 119.99896 * 167.18480 * 24 22 21 27 27 H 1.48495 * 109.47374 * 59.99196 * 26 24 22 28 28 H 1.48499 * 109.47488 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46752 * 299.99583 * 26 24 22 30 30 H 1.09003 * 109.46984 * 175.79514 * 1 2 3 31 31 H 1.09003 * 109.46757 * 295.79261 * 1 2 3 32 32 H 1.09000 * 109.47052 * 55.79195 * 1 2 3 33 33 H 1.08998 * 109.49798 * 294.37260 * 4 2 1 34 34 H 1.09002 * 109.49859 * 54.47467 * 4 2 1 35 35 H 1.09007 * 109.47031 * 59.99798 * 8 7 5 36 36 H 1.09001 * 109.47757 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47269 * 300.00111 * 8 7 5 38 38 H 1.08998 * 109.47194 * 59.99727 * 9 7 5 39 39 H 1.08997 * 109.46915 * 179.97438 * 9 7 5 40 40 H 1.08999 * 109.47137 * 299.99463 * 9 7 5 41 41 H 1.09000 * 109.46546 * 60.00538 * 10 7 5 42 42 H 1.08997 * 109.47197 * 180.02562 * 10 7 5 43 43 H 1.08998 * 109.47232 * 300.00499 * 10 7 5 44 44 H 1.08998 * 109.49431 * 181.31315 * 11 5 4 45 45 H 1.09001 * 109.49952 * 301.38110 * 11 5 4 46 46 H 1.08999 * 109.51017 * 185.70723 * 12 11 5 47 47 H 1.09000 * 109.43279 * 65.41901 * 12 11 5 48 48 H 1.08004 * 119.95439 * 359.97438 * 17 16 14 49 49 H 1.07997 * 119.66144 * 179.74747 * 18 17 16 50 50 H 1.08006 * 119.71515 * 179.97438 * 19 18 17 51 51 H 1.07997 * 120.06138 * 179.97438 * 20 19 18 52 52 H 0.97008 * 119.99971 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5676 -0.8495 1.1689 6 1 4.0062 0.1459 1.0991 7 6 4.0874 -1.5486 2.4267 8 6 3.4714 -2.9455 2.5252 9 6 5.6110 -1.6666 2.3517 10 6 3.6998 -0.7320 3.6611 11 6 3.9570 -1.6656 -0.0658 12 6 3.4645 -0.9501 -1.3225 13 7 2.0225 -0.6980 -1.1955 14 6 1.1673 -1.1041 -2.1546 15 8 -0.0315 -0.9786 -1.9933 16 6 1.6851 -1.7005 -3.3995 17 6 2.7263 -1.0878 -4.0915 18 6 3.2091 -1.6507 -5.2579 19 6 2.6657 -2.8279 -5.7540 20 6 1.6353 -3.4561 -5.0931 21 6 1.1256 -2.9039 -3.9034 22 6 0.0711 -3.5395 -3.2187 23 1 -0.0058 -3.4523 -2.1450 24 6 -0.8790 -4.2856 -3.9316 25 7 -0.9408 -4.1915 -5.2330 26 14 -2.0561 -5.4138 -3.0199 27 1 -2.8682 -4.6158 -2.0666 28 1 -2.9541 -6.0841 -3.9942 29 1 -1.2818 -6.4381 -2.2737 30 1 -0.3633 -1.0249 -0.0754 31 1 -0.3633 0.4472 0.9253 32 1 -0.3633 0.5778 -0.8499 33 1 1.7661 -0.1696 2.1365 34 1 1.6031 -1.7270 1.2890 35 1 3.7476 -3.5273 1.6457 36 1 3.8420 -3.4438 3.4211 37 1 2.3860 -2.8611 2.5788 38 1 6.0496 -0.6712 2.2817 39 1 5.9814 -2.1642 3.2480 40 1 5.8876 -2.2481 1.4723 41 1 2.6144 -0.6475 3.7146 42 1 4.0705 -1.2298 4.5571 43 1 4.1387 0.2633 3.5909 44 1 5.0412 -1.7694 -0.1062 45 1 3.4988 -2.6530 -0.0086 46 1 3.6503 -1.5769 -2.1947 47 1 3.9928 -0.0030 -1.4311 48 1 3.1575 -0.1714 -3.7163 49 1 4.0142 -1.1673 -5.7913 50 1 3.0546 -3.2540 -6.6671 51 1 1.2185 -4.3714 -5.4866 52 1 -1.5976 -4.7079 -5.7260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001556856607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:54 Heat of formation + Delta-G solvation = -24.088608 kcal Electronic energy + Delta-G solvation = -30113.556936 eV Core-core repulsion = 26463.199609 eV Total energy + Delta-G solvation = -3650.357326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.26100 -38.52638 -37.00330 -35.32328 -33.74237 -32.61869 -31.11444 -29.90973 -29.29101 -27.92496 -27.36811 -26.58797 -25.40629 -24.16938 -22.50946 -21.86827 -20.89062 -20.44988 -18.51056 -18.17288 -17.21609 -16.14622 -15.66405 -15.27389 -15.09923 -14.73229 -14.42455 -14.28040 -14.13380 -13.88593 -13.79266 -13.33261 -13.17368 -12.66257 -12.41184 -12.29138 -12.16648 -12.07970 -11.94632 -11.87858 -11.80436 -11.67778 -11.60283 -11.25591 -11.15445 -11.06020 -11.00202 -10.98701 -10.77872 -10.55770 -10.49224 -10.31559 -10.03109 -9.99857 -9.77762 -9.63195 -9.24057 -8.10668 -7.88847 -7.47769 -7.40263 -6.80480 -4.40819 2.51085 2.82382 3.06763 3.11263 3.22423 3.68690 3.93915 3.99444 4.59640 4.64775 4.68610 4.73949 5.07246 5.22835 5.25918 5.35026 5.46806 5.50894 5.55803 5.57061 5.59646 5.69328 5.71773 5.78243 5.86919 5.87970 5.90321 5.94440 5.99063 6.06196 6.08413 6.12116 6.15771 6.22697 6.27716 6.28438 6.33577 6.36952 6.41307 6.55803 6.58958 6.71894 6.93373 6.99294 7.11029 7.22716 7.33723 7.47548 7.68940 7.88382 7.97699 8.15345 8.29729 8.56434 8.79612 8.86728 9.33713 10.14284 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.004280 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.395670 B = 6540.058756 C = 7340.689413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.147 3.853 3 H 0.057 0.943 4 C -0.127 4.127 5 C -0.073 4.073 6 H 0.066 0.934 7 C -0.063 4.063 8 C -0.146 4.146 9 C -0.143 4.143 10 C -0.143 4.143 11 C -0.133 4.133 12 C 0.108 3.892 13 N -0.617 5.617 14 C 0.581 3.419 15 O -0.530 6.530 16 C -0.254 4.254 17 C -0.060 4.060 18 C -0.247 4.247 19 C -0.094 4.094 20 C -0.155 4.155 21 C 0.148 3.852 22 C -0.429 4.429 23 H 0.080 0.920 24 C 0.077 3.923 25 N -0.788 5.788 26 Si 0.910 3.090 27 H -0.263 1.263 28 H -0.277 1.277 29 H -0.263 1.263 30 H 0.075 0.925 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.053 0.947 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.118 0.882 52 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.529 3.706 12.339 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.043 3.957 3 H 0.075 0.925 4 C -0.165 4.165 5 C -0.092 4.092 6 H 0.085 0.915 7 C -0.064 4.064 8 C -0.203 4.203 9 C -0.200 4.200 10 C -0.200 4.200 11 C -0.171 4.171 12 C -0.015 4.015 13 N -0.353 5.353 14 C 0.374 3.626 15 O -0.407 6.407 16 C -0.259 4.259 17 C -0.079 4.079 18 C -0.267 4.267 19 C -0.113 4.113 20 C -0.175 4.175 21 C 0.145 3.855 22 C -0.458 4.458 23 H 0.098 0.902 24 C -0.142 4.142 25 N -0.413 5.413 26 Si 0.735 3.265 27 H -0.187 1.187 28 H -0.202 1.202 29 H -0.188 1.188 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.119 0.881 47 H 0.071 0.929 48 H 0.109 0.891 49 H 0.108 0.892 50 H 0.108 0.892 51 H 0.136 0.864 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.708 3.692 12.210 15.445 hybrid contribution -0.414 -0.387 0.254 0.621 sum 8.294 3.306 12.463 15.331 Atomic orbital electron populations 1.22202 0.92870 1.04302 0.99610 1.21106 0.95662 0.94290 0.84611 0.92525 1.22173 0.95236 1.01662 0.97473 1.21141 0.95525 0.98740 0.93767 0.91515 1.20529 0.95262 0.95653 0.94908 1.21977 1.00996 0.95799 1.01489 1.21924 0.94878 1.01525 1.01649 1.21923 1.01575 0.99519 0.96954 1.22038 1.00751 1.00013 0.94312 1.21703 0.80899 0.99773 0.99136 1.48158 1.07091 1.59734 1.20336 1.18491 0.85483 0.75816 0.82787 1.90736 1.15663 1.54860 1.79475 1.19507 1.05947 1.00500 0.99906 1.20623 0.94681 0.97312 0.95274 1.20260 1.05750 1.00590 1.00090 1.20776 0.96854 0.95681 0.98012 1.21302 0.96979 1.01164 0.98014 1.17365 0.89716 0.87953 0.90503 1.19538 1.06530 1.24197 0.95510 0.90227 1.25949 0.97993 0.95482 0.94729 1.69700 1.30848 1.32972 1.07746 0.86317 0.79883 0.80183 0.80166 1.18695 1.20235 1.18798 0.90619 0.95218 0.91125 0.91323 0.91136 0.92162 0.93262 0.92328 0.92907 0.93090 0.92176 0.92318 0.93081 0.92917 0.91045 0.91084 0.88138 0.92893 0.89072 0.89209 0.89214 0.86401 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 7.59 37.16 0.28 -2.03 16 2 C 0.15 2.30 3.49 -67.60 -0.24 2.06 16 3 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.65 3.94 -26.61 -0.10 -1.75 16 5 C -0.07 -0.83 1.51 -90.58 -0.14 -0.97 16 6 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 7 C -0.06 -0.62 0.57 -154.51 -0.09 -0.71 16 8 C -0.15 -1.54 7.77 37.15 0.29 -1.25 16 9 C -0.14 -1.27 8.12 37.16 0.30 -0.97 16 10 C -0.14 -1.27 8.12 37.16 0.30 -0.97 16 11 C -0.13 -1.70 4.63 -26.83 -0.12 -1.82 16 12 C 0.11 1.65 5.17 -3.93 -0.02 1.63 16 13 N -0.62 -11.16 2.98 -166.73 -0.50 -11.66 16 14 C 0.58 13.28 6.49 -12.52 -0.08 13.20 16 15 O -0.53 -13.55 11.13 5.26 0.06 -13.49 16 16 C -0.25 -6.12 4.92 -104.37 -0.51 -6.63 16 17 C -0.06 -1.29 7.50 -39.22 -0.29 -1.59 16 18 C -0.25 -5.25 10.03 -39.37 -0.39 -5.64 16 19 C -0.09 -2.12 10.01 -39.60 -0.40 -2.52 16 20 C -0.16 -3.91 8.65 -38.88 -0.34 -4.25 16 21 C 0.15 3.91 5.54 -106.54 -0.59 3.32 16 22 C -0.43 -11.57 7.82 -37.82 -0.30 -11.86 16 23 H 0.08 2.18 7.06 -52.48 -0.37 1.81 16 24 C 0.08 1.98 5.20 -17.30 -0.09 1.89 16 25 N -0.79 -20.44 11.06 55.56 0.61 -19.82 16 26 Si 0.91 19.33 29.58 -169.99 -5.03 14.31 16 27 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 28 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 29 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 30 H 0.07 1.53 6.71 -51.93 -0.35 1.18 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.39 6.78 -51.93 -0.35 1.03 16 33 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 34 H 0.07 1.02 6.51 -51.93 -0.34 0.69 16 35 H 0.06 0.68 6.46 -51.93 -0.34 0.35 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.66 6.46 -51.93 -0.34 0.33 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.55 6.40 -51.93 -0.33 0.22 16 41 H 0.06 0.54 6.40 -51.93 -0.33 0.21 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 45 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 46 H 0.10 1.72 5.08 -51.93 -0.26 1.46 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.09 1.73 7.24 -52.48 -0.38 1.35 16 49 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 50 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 51 H 0.12 3.05 6.42 -52.49 -0.34 2.71 16 52 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -28.26 381.57 -10.14 -38.40 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -8.51 Total: 7.38 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -2.53 Total: -20.87 kcal Atomic # 7 Polarization: -31.60 SS G_CDS: 0.12 Total: -31.49 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.06 Total: -13.49 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.26 -10.14 -38.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556856607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.314 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds