Wall clock time and date at job start Tue Mar 31 2020 15:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.58507 * 2 1 4 4 C 1.53187 * 109.58850 * 120.43084 * 2 1 3 5 5 C 1.53043 * 109.31417 * 174.42120 * 4 2 1 6 6 H 1.09000 * 109.45834 * 58.63841 * 5 4 2 7 7 C 1.52993 * 109.45999 * 178.61615 * 5 4 2 8 8 C 1.52993 * 109.47520 * 60.00077 * 7 5 4 9 9 C 1.53006 * 109.46852 * 180.02562 * 7 5 4 10 10 C 1.52999 * 109.47182 * 299.99610 * 7 5 4 11 11 C 1.53044 * 109.53640 * 298.63583 * 5 4 2 12 12 C 1.52765 * 109.38384 * 61.24019 * 11 5 4 13 13 N 1.46928 * 109.58330 * 239.72124 * 2 1 3 14 14 C 1.34772 * 120.63125 * 6.58141 * 13 2 1 15 15 O 1.21616 * 120.00209 * 354.83304 * 14 13 2 16 16 C 1.47429 * 119.99895 * 174.83477 * 14 13 2 17 17 C 1.39226 * 120.28504 * 312.53875 * 16 14 13 18 18 C 1.38224 * 120.09394 * 179.97438 * 17 16 14 19 19 C 1.38824 * 120.67585 * 0.02562 * 18 17 16 20 20 C 1.37593 * 120.57290 * 0.02562 * 19 18 17 21 21 C 1.40713 * 119.88240 * 359.97296 * 20 19 18 22 22 C 1.40884 * 120.32967 * 180.02562 * 21 20 19 23 23 H 1.08003 * 120.00048 * 149.71678 * 22 21 20 24 24 C 1.40270 * 119.99782 * 329.72002 * 22 21 20 25 25 N 1.30619 * 120.00280 * 347.17926 * 24 22 21 26 26 Si 1.86805 * 119.99896 * 167.18480 * 24 22 21 27 27 H 1.48495 * 109.47374 * 59.99196 * 26 24 22 28 28 H 1.48499 * 109.47488 * 179.97438 * 26 24 22 29 29 H 1.48505 * 109.46752 * 299.99583 * 26 24 22 30 30 H 1.09003 * 109.46984 * 175.79514 * 1 2 3 31 31 H 1.09003 * 109.46757 * 295.79261 * 1 2 3 32 32 H 1.09000 * 109.47052 * 55.79195 * 1 2 3 33 33 H 1.08998 * 109.49798 * 294.37260 * 4 2 1 34 34 H 1.09002 * 109.49859 * 54.47467 * 4 2 1 35 35 H 1.09007 * 109.47031 * 59.99798 * 8 7 5 36 36 H 1.09001 * 109.47757 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47269 * 300.00111 * 8 7 5 38 38 H 1.08998 * 109.47194 * 59.99727 * 9 7 5 39 39 H 1.08997 * 109.46915 * 179.97438 * 9 7 5 40 40 H 1.08999 * 109.47137 * 299.99463 * 9 7 5 41 41 H 1.09000 * 109.46546 * 60.00538 * 10 7 5 42 42 H 1.08997 * 109.47197 * 180.02562 * 10 7 5 43 43 H 1.08998 * 109.47232 * 300.00499 * 10 7 5 44 44 H 1.08998 * 109.49431 * 181.31315 * 11 5 4 45 45 H 1.09001 * 109.49952 * 301.38110 * 11 5 4 46 46 H 1.08999 * 109.51017 * 185.70723 * 12 11 5 47 47 H 1.09000 * 109.43279 * 65.41901 * 12 11 5 48 48 H 1.08004 * 119.95439 * 359.97438 * 17 16 14 49 49 H 1.07997 * 119.66144 * 179.74747 * 18 17 16 50 50 H 1.08006 * 119.71515 * 179.97438 * 19 18 17 51 51 H 1.07997 * 120.06138 * 179.97438 * 20 19 18 52 52 H 0.97008 * 119.99971 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5676 -0.8495 1.1689 6 1 4.0062 0.1459 1.0991 7 6 4.0874 -1.5486 2.4267 8 6 3.4714 -2.9455 2.5252 9 6 5.6110 -1.6666 2.3517 10 6 3.6998 -0.7320 3.6611 11 6 3.9570 -1.6656 -0.0658 12 6 3.4645 -0.9501 -1.3225 13 7 2.0225 -0.6980 -1.1955 14 6 1.1673 -1.1041 -2.1546 15 8 -0.0315 -0.9786 -1.9933 16 6 1.6851 -1.7005 -3.3995 17 6 2.7263 -1.0878 -4.0915 18 6 3.2091 -1.6507 -5.2579 19 6 2.6657 -2.8279 -5.7540 20 6 1.6353 -3.4561 -5.0931 21 6 1.1256 -2.9039 -3.9034 22 6 0.0711 -3.5395 -3.2187 23 1 -0.0058 -3.4523 -2.1450 24 6 -0.8790 -4.2856 -3.9316 25 7 -0.9408 -4.1915 -5.2330 26 14 -2.0561 -5.4138 -3.0199 27 1 -2.8682 -4.6158 -2.0666 28 1 -2.9541 -6.0841 -3.9942 29 1 -1.2818 -6.4381 -2.2737 30 1 -0.3633 -1.0249 -0.0754 31 1 -0.3633 0.4472 0.9253 32 1 -0.3633 0.5778 -0.8499 33 1 1.7661 -0.1696 2.1365 34 1 1.6031 -1.7270 1.2890 35 1 3.7476 -3.5273 1.6457 36 1 3.8420 -3.4438 3.4211 37 1 2.3860 -2.8611 2.5788 38 1 6.0496 -0.6712 2.2817 39 1 5.9814 -2.1642 3.2480 40 1 5.8876 -2.2481 1.4723 41 1 2.6144 -0.6475 3.7146 42 1 4.0705 -1.2298 4.5571 43 1 4.1387 0.2633 3.5909 44 1 5.0412 -1.7694 -0.1062 45 1 3.4988 -2.6530 -0.0086 46 1 3.6503 -1.5769 -2.1947 47 1 3.9928 -0.0030 -1.4311 48 1 3.1575 -0.1714 -3.7163 49 1 4.0142 -1.1673 -5.7913 50 1 3.0546 -3.2540 -6.6671 51 1 1.2185 -4.3714 -5.4866 52 1 -1.5976 -4.7079 -5.7260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001556856607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:53 Heat of formation + Delta-G solvation = -36.852221 kcal Electronic energy + Delta-G solvation = -30114.110407 eV Core-core repulsion = 26463.199609 eV Total energy + Delta-G solvation = -3650.910798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 329.210 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.63060 -39.85378 -38.68826 -36.71090 -35.60132 -33.99350 -32.33664 -31.74615 -30.97844 -28.94525 -28.17269 -27.64235 -27.25279 -25.43710 -24.05559 -23.25556 -22.50370 -21.87528 -20.04526 -19.15563 -19.04301 -17.70907 -17.24590 -16.88914 -16.32913 -16.16620 -15.86053 -15.48242 -15.31618 -15.21858 -15.01244 -14.58668 -14.46637 -14.40396 -13.98551 -13.63877 -13.50421 -13.32823 -13.23397 -13.19561 -13.04170 -12.94941 -12.81479 -12.69334 -12.61857 -12.59568 -12.24545 -12.20696 -12.06508 -11.87318 -11.73684 -11.62371 -11.45568 -11.21322 -11.14180 -11.01664 -10.92344 -9.83963 -9.41501 -9.28980 -9.20330 -8.68825 -6.38440 0.67975 1.01669 1.29706 1.40735 1.47664 2.12269 2.16457 2.35548 2.72769 3.66489 3.71803 3.73892 3.80790 4.05209 4.12375 4.25581 4.32768 4.34214 4.38436 4.41967 4.49499 4.55051 4.62489 4.71428 4.79139 4.83264 4.87022 4.88656 4.89674 4.91857 4.99989 5.06231 5.08662 5.12046 5.13965 5.15975 5.19947 5.23285 5.26530 5.28865 5.35811 5.37877 5.48292 5.52603 5.59996 5.63333 5.68494 5.87823 5.92518 6.04380 6.11168 6.30460 6.56811 6.72317 6.88906 6.96349 7.63215 8.28088 Molecular weight = 329.21amu Principal moments of inertia in cm(-1) A = 0.012281 B = 0.004280 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.395670 B = 6540.058756 C = 7340.689413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.142 3.858 3 H 0.083 0.917 4 C -0.119 4.119 5 C -0.066 4.066 6 H 0.085 0.915 7 C -0.059 4.059 8 C -0.146 4.146 9 C -0.141 4.141 10 C -0.141 4.141 11 C -0.127 4.127 12 C 0.103 3.897 13 N -0.610 5.610 14 C 0.572 3.428 15 O -0.572 6.572 16 C -0.267 4.267 17 C -0.057 4.057 18 C -0.235 4.235 19 C -0.094 4.094 20 C -0.182 4.182 21 C 0.117 3.883 22 C -0.466 4.466 23 H 0.056 0.944 24 C 0.039 3.961 25 N -0.820 5.820 26 Si 0.972 3.028 27 H -0.274 1.274 28 H -0.258 1.258 29 H -0.255 1.255 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.046 0.954 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.122 0.878 49 H 0.130 0.870 50 H 0.118 0.882 51 H 0.101 0.899 52 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.326 5.344 13.691 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.039 3.961 3 H 0.101 0.899 4 C -0.157 4.157 5 C -0.085 4.085 6 H 0.103 0.897 7 C -0.059 4.059 8 C -0.203 4.203 9 C -0.198 4.198 10 C -0.198 4.198 11 C -0.165 4.165 12 C -0.019 4.019 13 N -0.344 5.344 14 C 0.365 3.635 15 O -0.452 6.452 16 C -0.271 4.271 17 C -0.075 4.075 18 C -0.254 4.254 19 C -0.112 4.112 20 C -0.201 4.201 21 C 0.114 3.886 22 C -0.495 4.495 23 H 0.074 0.926 24 C -0.177 4.177 25 N -0.446 5.446 26 Si 0.793 3.207 27 H -0.199 1.199 28 H -0.181 1.181 29 H -0.179 1.179 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.114 0.886 45 H 0.064 0.936 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.140 0.860 49 H 0.148 0.852 50 H 0.136 0.864 51 H 0.119 0.881 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.561 5.336 13.574 18.612 hybrid contribution -1.132 -0.762 -0.171 1.375 sum 10.429 4.574 13.403 17.588 Atomic orbital electron populations 1.21988 0.94609 1.01577 0.99920 1.21361 0.94358 0.95696 0.84651 0.89897 1.22105 0.96494 1.00293 0.96801 1.21119 0.94087 0.99517 0.93768 0.89673 1.20488 0.96008 0.94803 0.94586 1.21978 1.00262 0.96683 1.01386 1.21904 0.93744 1.02244 1.01884 1.21906 1.01390 0.99945 0.96557 1.21992 1.01931 0.98660 0.93884 1.21914 0.79183 1.01136 0.99693 1.48151 1.07925 1.58468 1.19854 1.18509 0.85440 0.76036 0.83561 1.90726 1.17420 1.56719 1.80347 1.19865 1.06375 1.00031 1.00875 1.20934 0.93619 0.97965 0.94993 1.20735 1.05637 0.99559 0.99481 1.21123 0.95630 0.95916 0.98544 1.21258 0.98698 1.01475 0.98681 1.17707 0.90234 0.89167 0.91478 1.19510 1.08462 1.26982 0.94550 0.92598 1.26643 0.99119 0.96419 0.95510 1.69732 1.32030 1.34087 1.08704 0.85410 0.77920 0.78306 0.79030 1.19929 1.18150 1.17935 0.94470 0.92014 0.93934 0.88951 0.93510 0.93521 0.92151 0.93685 0.91766 0.92355 0.92593 0.92776 0.92319 0.91795 0.88567 0.93560 0.90202 0.89873 0.86020 0.85236 0.86410 0.88101 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 7.59 71.98 0.55 -3.88 16 2 C 0.14 4.28 3.49 44.97 0.16 4.44 16 3 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 4 C -0.12 -2.89 3.94 30.67 0.12 -2.77 16 5 C -0.07 -1.32 1.51 -10.77 -0.02 -1.34 16 6 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 7 C -0.06 -0.99 0.57 -52.18 -0.03 -1.02 16 8 C -0.15 -2.94 7.77 71.98 0.56 -2.38 16 9 C -0.14 -2.02 8.12 71.98 0.58 -1.43 16 10 C -0.14 -2.04 8.12 71.98 0.58 -1.45 16 11 C -0.13 -3.00 4.63 30.53 0.14 -2.86 16 12 C 0.10 2.95 5.17 86.22 0.45 3.39 16 13 N -0.61 -21.96 2.98 -799.66 -2.38 -24.34 16 14 C 0.57 27.18 6.49 86.67 0.56 27.74 16 15 O -0.57 -31.16 11.13 -4.08 -0.05 -31.21 16 16 C -0.27 -13.20 4.92 -19.70 -0.10 -13.30 16 17 C -0.06 -2.35 7.50 22.50 0.17 -2.18 16 18 C -0.24 -9.37 10.03 22.41 0.22 -9.15 16 19 C -0.09 -4.12 10.01 22.26 0.22 -3.90 16 20 C -0.18 -9.48 8.65 22.72 0.20 -9.28 16 21 C 0.12 6.51 5.54 -21.11 -0.12 6.39 16 22 C -0.47 -26.95 7.82 23.41 0.18 -26.76 16 23 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 24 C 0.04 2.07 5.20 85.37 0.44 2.52 16 25 N -0.82 -44.65 11.06 21.88 0.24 -44.41 16 26 Si 0.97 41.79 29.58 68.60 2.03 43.82 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 28 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 29 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 30 H 0.04 1.60 6.71 -2.39 -0.02 1.58 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.73 6.78 -2.39 -0.02 1.72 16 33 H 0.09 1.84 6.36 -2.39 -0.02 1.82 16 34 H 0.05 1.38 6.51 -2.39 -0.02 1.36 16 35 H 0.05 1.05 6.46 -2.38 -0.02 1.04 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.04 1.02 6.46 -2.39 -0.02 1.00 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.85 6.40 -2.39 -0.02 0.83 16 41 H 0.05 0.83 6.40 -2.39 -0.02 0.82 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 1.83 6.36 -2.39 -0.02 1.82 16 45 H 0.05 1.34 6.51 -2.39 -0.02 1.32 16 46 H 0.08 2.65 5.08 -2.39 -0.01 2.64 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.12 4.26 7.24 -2.91 -0.02 4.23 16 49 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 50 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 51 H 0.10 5.50 6.42 -2.91 -0.02 5.48 16 52 H 0.29 14.27 8.29 -92.70 -0.77 13.50 16 Total: -1.00 -67.24 381.57 5.63 -61.61 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: 0.90 Total: 31.75 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 4.88 Total: -37.23 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -2.14 Total: -68.75 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.05 Total: -31.21 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -67.24 5.63 -61.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001556856607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.759 kcal (2) G-P(sol) polarization free energy of solvation -67.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds