Wall clock time and date at job start Tue Mar 31 2020 16:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46354 * 2 1 4 4 C 1.52991 * 109.46867 * 239.99659 * 2 1 3 5 5 N 1.46497 * 109.47461 * 65.00244 * 4 2 1 6 6 C 1.36936 * 120.00121 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00014 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99869 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00005 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00037 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47181 * 90.00129 * 10 8 6 12 12 H 1.48502 * 109.47098 * 210.00254 * 10 8 6 13 13 H 1.48501 * 109.47017 * 330.00298 * 10 8 6 14 14 C 1.53000 * 109.47147 * 119.99347 * 2 1 3 15 15 N 1.46506 * 109.47353 * 295.00369 * 14 2 1 16 16 C 1.34773 * 119.99804 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00387 * 0.02562 * 16 15 14 18 18 C 1.50698 * 119.99551 * 180.27236 * 16 15 14 19 19 F 1.39900 * 110.63085 * 312.83158 * 18 16 15 20 20 C 1.55141 * 110.70535 * 76.13195 * 18 16 15 21 21 C 1.54910 * 101.65424 * 154.03528 * 20 18 16 22 22 N 1.47848 * 104.79452 * 322.92571 * 21 20 18 23 23 C 1.46900 * 111.00052 * 146.36630 * 22 21 20 24 24 C 1.53005 * 109.46959 * 298.07783 * 23 22 21 25 25 C 1.53001 * 109.47239 * 58.07238 * 23 22 21 26 26 C 1.52998 * 109.47202 * 178.07627 * 23 22 21 27 27 C 1.47446 * 108.56438 * 24.09884 * 22 21 20 28 28 H 1.09006 * 109.46664 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47232 * 300.00248 * 1 2 3 30 30 H 1.08990 * 109.47116 * 60.00335 * 1 2 3 31 31 H 1.09005 * 109.46589 * 184.99883 * 4 2 1 32 32 H 1.08994 * 109.47521 * 304.99625 * 4 2 1 33 33 H 0.97001 * 119.99499 * 359.97438 * 5 4 2 34 34 H 0.96999 * 119.99832 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47104 * 175.00076 * 14 2 1 36 36 H 1.09003 * 109.46910 * 54.99826 * 14 2 1 37 37 H 0.96994 * 119.99740 * 359.97438 * 15 14 2 38 38 H 1.08994 * 110.98810 * 272.12286 * 20 18 16 39 39 H 1.08995 * 110.99195 * 35.94134 * 20 18 16 40 40 H 1.08999 * 110.37360 * 204.10072 * 21 20 18 41 41 H 1.08996 * 110.37643 * 81.75762 * 21 20 18 42 42 H 1.08996 * 109.47459 * 66.00788 * 24 23 22 43 43 H 1.08994 * 109.46970 * 186.01344 * 24 23 22 44 44 H 1.09004 * 109.46656 * 306.00902 * 24 23 22 45 45 H 1.09002 * 109.46478 * 59.99943 * 25 23 22 46 46 H 1.08998 * 109.47375 * 180.02562 * 25 23 22 47 47 H 1.09001 * 109.46901 * 300.00492 * 25 23 22 48 48 H 1.09004 * 109.46874 * 60.00175 * 26 23 22 49 49 H 1.08998 * 109.47060 * 180.02562 * 26 23 22 50 50 H 1.08997 * 109.46841 * 299.99664 * 26 23 22 51 51 H 1.09000 * 109.88651 * 239.59703 * 27 22 21 52 52 H 1.09001 * 110.02188 * 118.49629 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6525 0.0352 -2.4423 6 6 2.0011 -0.4211 -3.6855 7 1 2.5620 -1.3384 -3.7863 8 6 1.6334 0.2955 -4.8161 9 7 1.9689 -0.1427 -6.0110 10 14 0.6625 1.8819 -4.6417 11 1 1.6013 3.0265 -4.5254 12 1 -0.1998 2.0683 -5.8363 13 1 -0.1857 1.8118 -3.4249 14 6 2.0401 -0.7211 1.2493 15 7 1.6525 0.0356 2.4425 16 6 1.9956 -0.4133 3.6660 17 8 2.6257 -1.4434 3.7794 18 6 1.5916 0.3618 4.8936 19 9 1.8785 1.7218 4.7344 20 6 0.0873 0.1477 5.2071 21 6 0.0465 0.4034 6.7344 22 7 1.3086 -0.1712 7.2472 23 6 1.8154 0.6047 8.3870 24 6 2.1213 2.0342 7.9351 25 6 0.7592 0.6348 9.4936 26 6 3.0935 -0.0464 8.9193 27 6 2.2917 -0.2002 6.1487 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 3.1264 -0.7995 -1.2054 32 1 1.6055 -1.7198 -1.2950 33 1 1.1483 0.8589 -2.3517 34 1 1.7116 0.3578 -6.8010 35 1 3.1264 -0.7993 1.2057 36 1 1.6054 -1.7197 1.2953 37 1 1.1489 0.8596 2.3517 38 1 -0.5295 0.8708 4.6736 39 1 -0.2189 -0.8720 4.9736 40 1 -0.8096 -0.1022 7.1810 41 1 0.0058 1.4731 6.9391 42 1 1.1935 2.5335 7.6561 43 1 2.5963 2.5792 8.7507 44 1 2.7922 2.0080 7.0764 45 1 0.5413 -0.3836 9.8154 46 1 1.1351 1.2109 10.3391 47 1 -0.1513 1.0987 9.1142 48 1 3.8459 -0.0677 8.1309 49 1 3.4693 0.5291 9.7652 50 1 2.8755 -1.0647 9.2412 51 1 2.6135 -1.2255 5.9661 52 1 3.1524 0.4188 6.4018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753630500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:57 Heat of formation + Delta-G solvation = -70.793852 kcal Electronic energy + Delta-G solvation = -29363.570302 eV Core-core repulsion = 25312.711211 eV Total energy + Delta-G solvation = -4050.859091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 329.222 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.33537 -40.47915 -39.49182 -37.11462 -35.15711 -34.62099 -32.59683 -30.68290 -30.07825 -29.80382 -27.75354 -27.41149 -26.73862 -25.70380 -23.24874 -22.46850 -21.82417 -20.65122 -20.00442 -19.23029 -18.40925 -17.45518 -17.16322 -16.31659 -16.12552 -15.55912 -15.33324 -15.25184 -14.82854 -14.62923 -14.44171 -14.22146 -14.16658 -13.78367 -13.51824 -13.39030 -13.22429 -12.83629 -12.68389 -12.56613 -12.52074 -12.45506 -12.26399 -12.16883 -12.09534 -11.77694 -11.75048 -11.52312 -11.49095 -11.25463 -11.09328 -10.97291 -10.80558 -10.68063 -10.64562 -10.18237 -9.99999 -9.60433 -9.27435 -8.92791 -8.72935 -7.26085 -5.78821 -3.14702 2.15461 2.70975 3.33556 3.36384 3.37568 3.42521 3.68563 3.79816 4.06151 4.33301 4.40215 4.48608 4.56287 4.64288 4.71883 4.77795 4.79715 5.01109 5.02895 5.14522 5.16457 5.18837 5.23399 5.32895 5.35234 5.40875 5.43388 5.48218 5.51336 5.53135 5.60200 5.64738 5.68488 5.75075 5.78485 5.81082 5.82144 5.93038 6.00946 6.15798 6.25185 6.40613 6.45661 6.61203 6.63147 6.70117 7.16855 7.81910 7.97219 8.39955 9.18616 9.90685 10.10225 11.39541 Molecular weight = 329.22amu Principal moments of inertia in cm(-1) A = 0.031068 B = 0.002093 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.043487 B =13374.964764 C =13679.055677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.125 3.875 15 N -0.713 5.713 16 C 0.508 3.492 17 O -0.520 6.520 18 C 0.079 3.921 19 F -0.188 7.188 20 C -0.141 4.141 21 C 0.038 3.962 22 N -0.509 5.509 23 C 0.092 3.908 24 C -0.185 4.185 25 C -0.138 4.138 26 C -0.141 4.141 27 C 0.030 3.970 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.031 0.969 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.403 0.597 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.116 0.884 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 3.806 33.545 34.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 H 0.095 0.905 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.192 4.192 9 N -0.581 5.581 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.002 3.998 15 N -0.364 5.364 16 C 0.290 3.710 17 O -0.395 6.395 18 C 0.056 3.944 19 F -0.169 7.169 20 C -0.180 4.180 21 C -0.089 4.089 22 N -0.233 5.233 23 C 0.003 3.997 24 C -0.244 4.244 25 C -0.195 4.195 26 C -0.198 4.198 27 C -0.098 4.098 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.238 0.762 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.134 0.866 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.571 2.425 33.612 33.888 hybrid contribution -0.771 2.632 -0.530 2.793 sum -4.342 5.057 33.082 33.747 Atomic orbital electron populations 1.21826 0.94695 1.02314 1.01301 1.21615 0.96701 1.00628 0.94490 0.90499 1.20546 0.97253 0.94229 0.84239 1.42679 1.67679 1.27307 1.02338 1.19062 1.29433 1.07202 0.81725 0.89154 1.24684 1.00781 0.98648 0.95112 1.69702 1.51249 1.40248 0.96923 0.86543 0.80235 0.84833 0.76830 1.21094 1.21702 1.20413 1.21496 1.00581 0.95320 0.82438 1.46034 1.56863 1.27725 1.05763 1.20323 0.80055 0.86153 0.84435 1.90743 1.38814 1.24003 1.85988 1.22373 0.98788 0.77240 0.96000 1.92912 1.94644 1.32674 1.96642 1.23313 0.92346 1.04883 0.97443 1.23159 0.93734 0.99298 0.92752 1.64011 1.02967 1.50296 1.06061 1.21292 0.95701 0.91256 0.91465 1.22575 1.02225 0.97306 1.02250 1.21857 0.97852 1.02567 0.97263 1.21900 0.95715 1.01338 1.00864 1.23456 0.95188 1.04402 0.86751 0.92287 0.93728 0.91665 0.95177 0.95093 0.80631 0.93040 0.90820 0.90749 0.76180 0.88756 0.88155 0.89139 0.92084 0.92195 0.91850 0.91835 0.91631 0.92093 0.92593 0.92437 0.92075 0.91548 0.86578 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.94 37.16 0.33 -1.56 16 2 C -0.12 -1.61 2.46 -90.62 -0.22 -1.83 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.17 3.06 5.65 -4.05 -0.02 3.04 16 5 N -0.75 -17.53 5.13 -59.91 -0.31 -17.84 16 6 C -0.24 -6.90 10.47 -15.06 -0.16 -7.05 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 10 Si 0.89 21.89 27.74 -169.99 -4.71 17.18 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 14 C 0.12 1.57 5.07 -4.04 -0.02 1.55 16 15 N -0.71 -7.77 5.26 -60.29 -0.32 -8.09 16 16 C 0.51 6.00 6.89 -10.99 -0.08 5.93 16 17 O -0.52 -7.78 15.42 5.56 0.09 -7.69 16 18 C 0.08 0.74 1.42 -89.95 -0.13 0.61 16 19 F -0.19 -1.89 16.29 2.25 0.04 -1.85 16 20 C -0.14 -1.03 6.32 -24.59 -0.16 -1.19 16 21 C 0.04 0.26 5.14 -2.29 -0.01 0.25 16 22 N -0.51 -4.06 5.00 -215.63 -1.08 -5.14 16 23 C 0.09 0.63 0.67 -131.60 -0.09 0.54 16 24 C -0.19 -1.26 7.88 37.16 0.29 -0.97 16 25 C -0.14 -0.77 8.34 37.16 0.31 -0.46 16 26 C -0.14 -0.91 8.36 37.16 0.31 -0.60 16 27 C 0.03 0.28 4.81 -2.83 -0.01 0.27 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 30 H 0.06 0.99 7.18 -51.93 -0.37 0.62 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.36 8.11 4.71 -40.82 -0.19 7.92 16 34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.40 3.70 7.59 -40.82 -0.31 3.39 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.76 8.04 -51.93 -0.42 0.34 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.40 5.48 -51.93 -0.28 0.11 16 42 H 0.06 0.41 6.31 -51.93 -0.33 0.08 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.51 5.54 -51.93 -0.29 0.22 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.30 6.97 -51.93 -0.36 -0.06 16 48 H 0.06 0.41 6.57 -51.93 -0.34 0.06 16 49 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.12 1.27 6.72 -51.93 -0.35 0.92 16 52 H 0.08 0.73 4.77 -51.93 -0.25 0.48 16 LS Contribution 396.72 15.07 5.98 5.98 Total: -1.00 -32.44 396.72 -8.24 -40.68 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -8.95 Total: 6.79 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 0.25 Total: -1.47 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.93 Total: -59.60 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.69 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.44 -8.24 -40.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753630500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.117 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds