Wall clock time and date at job start Tue Mar 31 2020 15:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 15 15 N 1.46490 * 109.47559 * 295.00069 * 14 2 1 16 16 C 1.34773 * 120.00384 * 179.97438 * 15 14 2 17 17 O 1.21617 * 119.99784 * 0.02562 * 16 15 14 18 18 C 1.47378 * 120.00271 * 180.02562 * 16 15 14 19 19 C 1.36396 * 127.18833 * 359.68295 * 18 16 15 20 20 O 1.33693 * 108.41556 * 179.89240 * 19 18 16 21 21 C 1.34221 * 110.91127 * 0.39419 * 20 19 18 22 22 Br 1.89097 * 125.44844 * 179.77983 * 21 20 19 23 23 C 1.34289 * 109.10456 * 359.76222 * 21 20 19 24 24 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 25 25 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 27 27 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 28 28 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 29 29 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 31 31 H 1.08998 * 109.46886 * 55.00501 * 14 2 1 32 32 H 1.09002 * 109.46923 * 174.99751 * 14 2 1 33 33 H 0.97002 * 120.00315 * 0.02562 * 15 14 2 34 34 H 1.07998 * 125.79317 * 0.04514 * 19 18 16 35 35 H 1.07999 * 127.03113 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0064 -0.4178 -3.6852 7 1 2.5675 -1.3351 -3.7860 8 6 1.6441 0.3020 -4.8155 9 7 0.9607 1.4202 -4.6925 10 14 2.1263 -0.3163 -6.5109 11 1 1.5331 -1.6590 -6.7353 12 1 1.6240 0.6261 -7.5429 13 1 3.6057 -0.4071 -6.6024 14 6 2.0400 -0.7211 1.2494 15 7 1.6525 0.0355 2.4424 16 6 1.9956 -0.4133 3.6660 17 8 2.6274 -1.4462 3.7797 18 6 1.6053 0.3477 4.8663 19 6 0.9064 1.5182 4.9092 20 8 0.7594 1.8756 6.1890 21 6 1.3452 0.9856 7.0053 22 35 1.3906 1.0926 8.8927 23 6 1.8936 0.0069 6.2673 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6054 -1.7199 -1.2950 28 1 3.1263 -0.7995 -1.2055 29 1 1.1488 0.8593 -2.3518 30 1 0.7072 1.9230 -5.4823 31 1 1.6054 -1.7197 1.2953 32 1 3.1263 -0.7993 1.2057 33 1 1.1483 0.8592 2.3518 34 1 0.5329 2.0626 4.0545 35 1 2.4351 -0.8547 6.6289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753616654.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:45 Heat of formation + Delta-G solvation = -10.234235 kcal Electronic energy + Delta-G solvation = -19215.713390 eV Core-core repulsion = 15876.171104 eV Total energy + Delta-G solvation = -3339.542286 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 330.037 amu Computer time = 2.77 seconds Orbital eigenvalues (eV) -43.07522 -39.61682 -36.86853 -34.46123 -33.55066 -32.84072 -32.22540 -30.14725 -29.22906 -26.67820 -25.54475 -23.75009 -22.26775 -21.86685 -20.48822 -19.85041 -18.62253 -17.12818 -16.87039 -16.45260 -16.05268 -15.43778 -15.14289 -14.56960 -14.28089 -13.74756 -13.67239 -13.54165 -13.09663 -13.05631 -12.68068 -12.36560 -12.09174 -11.87014 -11.15932 -11.09544 -10.93672 -10.74147 -10.61954 -10.49306 -10.27424 -10.23793 -10.02597 -9.69668 -9.24168 -9.08575 -8.89189 -6.94691 -5.79019 -3.07512 0.34696 0.82151 1.37794 2.65422 3.07831 3.11756 3.43522 3.47838 3.48830 4.15098 4.32383 4.57402 4.77780 4.92278 5.04014 5.16364 5.24236 5.32819 5.55686 5.62917 5.75377 5.91524 5.93475 6.05530 6.17910 6.22753 6.33323 6.39347 6.61127 6.73339 6.82795 7.34290 7.68372 8.04899 8.40217 9.51428 10.08284 10.42994 11.43891 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.054383 B = 0.001793 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.744921 B =15614.170969 C =15968.207096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.240 4.240 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.719 5.719 16 C 0.584 3.416 17 O -0.534 6.534 18 C -0.228 4.228 19 C 0.045 3.955 20 O -0.158 6.158 21 C -0.036 4.036 22 Br 0.057 6.943 23 C -0.102 4.102 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.384 0.616 30 H 0.256 0.744 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.222 0.778 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.719 2.150 30.040 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.004 3.996 15 N -0.370 5.370 16 C 0.371 3.629 17 O -0.411 6.411 18 C -0.233 4.233 19 C -0.028 4.028 20 O -0.054 6.054 21 C -0.163 4.163 22 Br 0.141 6.859 23 C -0.124 4.124 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.238 0.762 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.324 1.587 30.776 30.845 hybrid contribution -0.143 0.318 -1.497 1.537 sum -1.467 1.905 29.279 29.377 Atomic orbital electron populations 1.21800 0.94623 1.02053 1.01454 1.21566 0.96733 1.00538 0.94160 0.90465 1.20574 0.96666 0.94243 0.85315 1.42326 1.66844 1.27776 1.00588 1.19194 1.28777 1.05421 0.83679 0.91185 1.24740 1.01015 0.97388 0.97895 1.69645 1.43581 1.16487 1.28646 0.86246 0.78047 0.77696 0.84069 1.21248 1.21706 1.21259 1.21473 1.00396 0.95294 0.82446 1.45893 1.57591 1.27829 1.05721 1.17123 0.79426 0.84422 0.81961 1.90813 1.39884 1.23909 1.86512 1.21576 1.08422 0.98725 0.94595 1.24707 0.97956 0.95579 0.84527 1.83838 1.60803 1.44895 1.15876 1.23682 1.07199 0.94632 0.90741 1.96898 1.97886 1.98487 0.92659 1.22706 1.00422 0.99279 0.89994 0.91058 0.92714 0.94017 0.95926 0.96066 0.78214 0.93473 0.91028 0.91028 0.76772 0.76186 0.81091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.94 37.16 0.33 -1.62 16 2 C -0.11 -1.60 2.46 -90.62 -0.22 -1.83 16 3 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 4 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 5 N -0.73 -17.93 5.33 -59.91 -0.32 -18.25 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 10 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.13 1.65 5.06 -4.05 -0.02 1.63 16 15 N -0.72 -7.77 5.27 -61.40 -0.32 -8.10 16 16 C 0.58 7.34 7.81 -12.54 -0.10 7.24 16 17 O -0.53 -8.81 16.98 5.26 0.09 -8.72 16 18 C -0.23 -2.30 6.31 -103.27 -0.65 -2.95 16 19 C 0.04 0.33 11.61 30.07 0.35 0.67 16 20 O -0.16 -1.38 10.52 7.53 0.08 -1.30 16 21 C -0.04 -0.32 7.76 29.34 0.23 -0.10 16 22 Br 0.06 0.41 34.08 -68.01 -2.32 -1.91 16 23 C -0.10 -1.00 10.96 -37.41 -0.41 -1.41 16 24 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.44 7.18 -51.93 -0.37 0.07 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.14 6.62 -40.82 -0.27 2.87 16 34 H 0.22 0.70 7.47 -52.49 -0.39 0.30 16 35 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -33.10 326.54 -7.13 -40.23 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.19 Total: 5.56 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.76 Total: -2.59 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.08 Total: -53.43 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.17 Total: -10.02 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -2.32 Total: -1.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.10 -7.13 -40.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753616654.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.997 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.77 seconds