Wall clock time and date at job start Tue Mar 31 2020 15:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47247 * 119.99810 * 2 1 3 5 5 N 1.46506 * 109.47237 * 295.00112 * 4 2 1 6 6 C 1.36939 * 120.00073 * 179.72302 * 5 4 2 7 7 H 1.08004 * 119.99859 * 0.02562 * 6 5 4 8 8 C 1.38805 * 119.99849 * 180.02562 * 6 5 4 9 9 N 1.31622 * 120.00455 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00168 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46991 * 59.99625 * 10 8 6 12 12 H 1.48497 * 109.47469 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46948 * 299.99895 * 10 8 6 14 14 C 1.52999 * 109.47615 * 240.00109 * 2 1 3 15 15 N 1.46498 * 109.46911 * 64.99433 * 14 2 1 16 16 C 1.34780 * 119.99897 * 179.97438 * 15 14 2 17 17 O 1.21620 * 119.99937 * 0.02562 * 16 15 14 18 18 C 1.47376 * 120.00082 * 180.02562 * 16 15 14 19 19 C 1.36395 * 127.18860 * 359.68321 * 18 16 15 20 20 O 1.33692 * 108.41834 * 179.89679 * 19 18 16 21 21 C 1.34222 * 110.90789 * 0.38755 * 20 19 18 22 22 Br 1.89100 * 125.44730 * 179.78155 * 21 20 19 23 23 C 1.34287 * 109.10137 * 359.76703 * 21 20 19 24 24 H 1.08994 * 109.47418 * 299.99897 * 1 2 3 25 25 H 1.08995 * 109.46959 * 60.00126 * 1 2 3 26 26 H 1.08997 * 109.46764 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47671 * 175.00452 * 4 2 1 28 28 H 1.08998 * 109.47454 * 55.00449 * 4 2 1 29 29 H 0.97005 * 119.99811 * 0.02562 * 5 4 2 30 30 H 0.97000 * 120.00679 * 179.97438 * 9 8 6 31 31 H 1.08993 * 109.47340 * 185.00053 * 14 2 1 32 32 H 1.09004 * 109.46801 * 304.99991 * 14 2 1 33 33 H 0.97000 * 120.00151 * 0.02562 * 15 14 2 34 34 H 1.08001 * 125.79341 * 0.03509 * 19 18 16 35 35 H 1.08003 * 127.02116 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0354 2.4424 6 6 1.9967 -0.4234 3.6859 7 1 2.5542 -1.3428 3.7870 8 6 1.6290 0.2933 4.8164 9 7 0.9499 1.4140 4.6932 10 14 2.0991 -0.3322 6.5126 11 1 3.5776 -0.4269 6.6130 12 1 1.5925 0.6077 7.5447 13 1 1.5013 -1.6743 6.7285 14 6 2.0401 -0.7212 -1.2492 15 7 1.6525 0.0354 -2.4423 16 6 1.9966 -0.4130 -3.6659 17 8 2.6285 -1.4460 -3.7795 18 6 1.6071 0.3483 -4.8661 19 6 0.8980 1.5126 -4.9098 20 8 0.7599 1.8754 -6.1891 21 6 1.3472 0.9862 -7.0052 22 35 1.3942 1.0940 -8.8925 23 6 1.8962 0.0080 -6.2670 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1264 -0.7994 1.2057 28 1 1.6055 -1.7198 1.2952 29 1 1.1482 0.8592 2.3518 30 1 0.6926 1.9147 5.4832 31 1 3.1264 -0.7994 -1.2055 32 1 1.6055 -1.7198 -1.2951 33 1 1.1488 0.8594 -2.3517 34 1 0.5151 2.0514 -4.0556 35 1 2.4396 -0.8525 -6.6285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753616655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:53 Heat of formation + Delta-G solvation = -10.230229 kcal Electronic energy + Delta-G solvation = -19215.864108 eV Core-core repulsion = 15876.321996 eV Total energy + Delta-G solvation = -3339.542112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 330.037 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.07590 -39.61571 -36.86850 -34.46075 -33.55122 -32.84055 -32.22534 -30.14693 -29.22898 -26.67865 -25.54518 -23.75026 -22.26771 -21.86687 -20.48845 -19.85048 -18.62262 -17.12769 -16.87044 -16.45207 -16.05224 -15.43824 -15.14271 -14.56969 -14.28084 -13.74751 -13.67237 -13.54135 -13.09689 -13.05635 -12.68278 -12.36591 -12.08938 -11.87009 -11.15939 -11.09542 -10.93733 -10.74103 -10.62096 -10.49302 -10.27396 -10.23846 -10.02609 -9.69690 -9.24168 -9.08574 -8.89215 -6.94690 -5.78952 -3.07508 0.34687 0.82137 1.37800 2.65419 3.07818 3.11740 3.43525 3.47855 3.48848 4.15092 4.32385 4.57400 4.77787 4.92290 5.04031 5.16355 5.24212 5.32811 5.55724 5.62899 5.75340 5.91525 5.93499 6.05454 6.17885 6.22739 6.33376 6.39325 6.61076 6.73406 6.82722 7.34301 7.68344 8.04877 8.40187 9.51438 10.08271 10.43003 11.43927 Molecular weight = 330.04amu Principal moments of inertia in cm(-1) A = 0.054509 B = 0.001793 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.554134 B =15615.828714 C =15971.131564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.127 3.873 15 N -0.719 5.719 16 C 0.584 3.416 17 O -0.534 6.534 18 C -0.228 4.228 19 C 0.045 3.955 20 O -0.158 6.158 21 C -0.036 4.036 22 Br 0.057 6.943 23 C -0.102 4.102 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.384 0.616 30 H 0.256 0.744 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.222 0.778 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.708 2.155 -30.045 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.004 3.996 15 N -0.370 5.370 16 C 0.371 3.629 17 O -0.411 6.411 18 C -0.233 4.233 19 C -0.028 4.028 20 O -0.054 6.054 21 C -0.163 4.163 22 Br 0.141 6.859 23 C -0.124 4.124 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.238 0.762 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.306 1.595 -30.780 30.849 hybrid contribution -0.158 0.309 1.498 1.538 sum -1.464 1.904 -29.282 29.380 Atomic orbital electron populations 1.21799 0.94625 1.02053 1.01455 1.21564 0.96729 1.00543 0.94161 0.90460 1.20576 0.96683 0.94225 0.85319 1.42328 1.67056 1.27600 1.00552 1.19192 1.28953 1.05290 0.83631 0.91184 1.24737 1.01027 0.97378 0.97885 1.69642 1.43666 1.16425 1.28633 0.86247 0.78027 0.77712 0.84084 1.21256 1.21706 1.21251 1.21473 1.00395 0.95296 0.82443 1.45896 1.57596 1.27824 1.05724 1.17125 0.79428 0.84416 0.81962 1.90814 1.39880 1.23911 1.86512 1.21572 1.08226 0.98919 0.94598 1.24708 0.97917 0.95606 0.84540 1.83839 1.60973 1.44678 1.15921 1.23682 1.07266 0.94568 0.90738 1.96899 1.97885 1.98480 0.92667 1.22703 1.00432 0.99280 0.89986 0.91060 0.94014 0.92716 0.96052 0.95938 0.78215 0.93470 0.91027 0.91027 0.76770 0.76186 0.81093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.94 37.16 0.33 -1.62 16 2 C -0.11 -1.60 2.46 -90.62 -0.22 -1.83 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.16 3.08 5.65 -4.04 -0.02 3.06 16 5 N -0.73 -17.93 5.33 -59.91 -0.32 -18.25 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.89 7.83 -52.48 -0.41 1.47 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 10 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.13 1.65 5.06 -4.04 -0.02 1.63 16 15 N -0.72 -7.77 5.27 -61.40 -0.32 -8.10 16 16 C 0.58 7.34 7.81 -12.54 -0.10 7.24 16 17 O -0.53 -8.81 16.98 5.26 0.09 -8.72 16 18 C -0.23 -2.30 6.31 -103.28 -0.65 -2.95 16 19 C 0.04 0.33 11.61 30.07 0.35 0.67 16 20 O -0.16 -1.38 10.52 7.53 0.08 -1.30 16 21 C -0.04 -0.32 7.76 29.34 0.23 -0.10 16 22 Br 0.06 0.41 34.08 -68.01 -2.32 -1.91 16 23 C -0.10 -1.00 10.95 -37.41 -0.41 -1.41 16 24 H 0.07 1.17 7.18 -51.93 -0.37 0.80 16 25 H 0.04 0.44 7.18 -51.93 -0.37 0.07 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.40 3.14 6.62 -40.82 -0.27 2.87 16 34 H 0.22 0.70 7.47 -52.49 -0.39 0.30 16 35 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 326.54 15.07 4.92 4.92 Total: -1.00 -33.10 326.54 -7.13 -40.23 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.19 Total: 5.55 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.76 Total: -2.58 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.08 Total: -53.43 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.17 Total: -10.02 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -2.32 Total: -1.91 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.10 -7.13 -40.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753616655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.001 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds