Wall clock time and date at job start Tue Mar 31 2020 15:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 119.99697 * 2 1 4 4 H 1.48495 * 109.47543 * 274.00726 * 3 2 1 5 5 H 1.48502 * 109.47250 * 34.00846 * 3 2 1 6 6 H 1.48503 * 109.47251 * 154.00585 * 3 2 1 7 7 C 1.38811 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99882 * 340.25823 * 7 2 1 9 9 N 1.36933 * 120.00005 * 159.97502 * 7 2 1 10 10 C 1.46965 * 120.59283 * 149.85042 * 9 7 2 11 11 C 1.53814 * 108.39968 * 124.75573 * 10 9 7 12 12 N 1.46965 * 108.57572 * 49.63793 * 11 10 9 13 13 C 1.34777 * 120.59339 * 124.66775 * 12 11 10 14 14 O 1.21579 * 120.00332 * 0.97630 * 13 12 11 15 15 C 1.47639 * 120.00164 * 180.97258 * 13 12 11 16 16 C 1.39708 * 120.14294 * 327.12174 * 15 13 12 17 17 C 1.37986 * 119.86482 * 180.02562 * 16 15 13 18 18 F 1.35103 * 119.92211 * 180.02562 * 17 16 15 19 19 C 1.38801 * 120.15606 * 359.97438 * 17 16 15 20 20 Cl 1.73609 * 119.85405 * 179.97438 * 19 17 16 21 21 C 1.38322 * 120.29194 * 359.97438 * 19 17 16 22 22 C 1.38263 * 120.12722 * 359.76086 * 21 19 17 23 23 F 1.35101 * 120.07255 * 180.27863 * 22 21 19 24 24 C 1.46962 * 118.81224 * 304.64434 * 12 11 10 25 25 C 1.46967 * 120.59648 * 330.12719 * 9 7 2 26 26 H 0.97000 * 120.00298 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.60701 * 244.54083 * 10 9 7 28 28 H 1.08999 * 109.60804 * 5.05104 * 10 9 7 29 29 H 1.08999 * 109.74084 * 289.85267 * 11 10 9 30 30 H 1.09003 * 109.53290 * 169.30068 * 11 10 9 31 31 H 1.08000 * 120.06685 * 359.97438 * 16 15 13 32 32 H 1.07995 * 119.93769 * 179.97438 * 21 19 17 33 33 H 1.08997 * 109.61400 * 295.48117 * 24 12 11 34 34 H 1.09003 * 109.60774 * 174.97107 * 24 12 11 35 35 H 1.09003 * 109.60730 * 354.94807 * 25 9 7 36 36 H 1.09000 * 109.61009 * 115.45598 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4129 2.0954 -1.3966 5 1 1.4924 2.6267 0.7831 6 1 3.5875 1.4173 0.6136 7 6 2.0103 -1.2021 -0.0005 8 1 1.5180 -2.1101 0.3150 9 7 3.3176 -1.2377 -0.4066 10 6 4.2487 -2.2261 0.1554 11 6 4.8758 -3.0172 -1.0051 12 7 5.3742 -2.0637 -2.0063 13 6 6.6609 -2.0987 -2.4060 14 8 7.4163 -2.9355 -1.9508 15 6 7.1531 -1.1209 -3.3966 16 6 6.3018 -0.6481 -4.3984 17 6 6.7680 0.2653 -5.3216 18 9 5.9456 0.7237 -6.2906 19 6 8.0795 0.7151 -5.2565 20 17 8.6580 1.8640 -6.4225 21 6 8.9276 0.2521 -4.2668 22 6 8.4713 -0.6591 -3.3323 23 9 9.2990 -1.1063 -2.3627 24 6 4.4444 -1.0718 -2.5642 25 6 3.8161 -0.2843 -1.4079 26 1 -0.4850 0.8400 0.0004 27 1 5.0302 -1.7143 0.7172 28 1 3.7074 -2.9059 0.8132 29 1 4.1244 -3.6639 -1.4582 30 1 5.7030 -3.6200 -0.6303 31 1 5.2812 -0.9974 -4.4506 32 1 9.9470 0.6056 -4.2217 33 1 3.6624 -1.5800 -3.1283 34 1 4.9868 -0.3897 -3.2191 35 1 2.9888 0.3185 -1.7827 36 1 4.5674 0.3626 -0.9548 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152214385.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:56 Heat of formation + Delta-G solvation = -58.401907 kcal Electronic energy + Delta-G solvation = -26312.521340 eV Core-core repulsion = 22074.230517 eV Total energy + Delta-G solvation = -4238.290822 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.069 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.22362 -50.20386 -41.78071 -39.76232 -38.70479 -37.79731 -35.84915 -33.88857 -33.05821 -31.79554 -31.44700 -29.04937 -26.21387 -25.45380 -24.70769 -24.02614 -22.52630 -20.90433 -19.44655 -19.10201 -18.75368 -18.34578 -17.74553 -17.35779 -17.25365 -16.80009 -16.61117 -16.31543 -16.05836 -15.92425 -15.82857 -15.22776 -15.15746 -14.87018 -14.64987 -14.27857 -14.07037 -14.02128 -13.98775 -13.49797 -13.07892 -12.81625 -12.74761 -12.43189 -12.32709 -12.16890 -12.00622 -11.90752 -11.61553 -11.14724 -10.85040 -10.35968 -10.07382 -9.86492 -8.88490 -8.18638 -5.54960 -0.90201 -0.46125 0.59115 1.27274 1.27334 1.42465 1.49523 1.66199 2.03552 2.38778 2.63068 2.75915 2.96829 3.05530 3.23307 3.24878 3.55016 3.90603 3.94108 4.05299 4.12357 4.22384 4.27830 4.31527 4.46250 4.49137 4.56879 4.59883 4.63617 4.75202 4.88665 5.09890 5.17016 5.32937 5.84065 6.09558 6.19771 6.82764 6.85768 7.55406 7.96423 9.00820 Molecular weight = 330.07amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.004258 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.466942 B = 6573.751468 C = 7788.698469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.024 4.024 3 Si 0.937 3.063 4 H -0.262 1.262 5 H -0.311 1.311 6 H -0.269 1.269 7 C -0.253 4.253 8 H 0.057 0.943 9 N -0.617 5.617 10 C 0.133 3.867 11 C 0.104 3.896 12 N -0.589 5.589 13 C 0.556 3.444 14 O -0.561 6.561 15 C -0.143 4.143 16 C -0.092 4.092 17 C 0.098 3.902 18 F -0.117 7.117 19 C -0.025 4.025 20 Cl -0.018 7.018 21 C -0.108 4.108 22 C 0.149 3.851 23 F -0.120 7.120 24 C 0.067 3.933 25 C 0.106 3.894 26 H 0.263 0.737 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.191 0.809 32 H 0.192 0.808 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.624 2.333 -13.900 23.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.220 4.220 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.240 1.240 6 H -0.193 1.193 7 C -0.383 4.383 8 H 0.074 0.926 9 N -0.342 5.342 10 C 0.007 3.993 11 C -0.019 4.019 12 N -0.320 5.320 13 C 0.345 3.655 14 O -0.441 6.441 15 C -0.147 4.147 16 C -0.110 4.110 17 C 0.078 3.922 18 F -0.095 7.095 19 C -0.053 4.053 20 Cl 0.012 6.988 21 C -0.127 4.127 22 C 0.128 3.872 23 F -0.098 7.098 24 C -0.056 4.056 25 C -0.020 4.020 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.207 0.793 32 H 0.209 0.791 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 18.902 2.062 -13.734 23.455 hybrid contribution -0.254 0.894 0.420 1.020 sum 18.648 2.956 -13.313 23.103 Atomic orbital electron populations 1.69941 1.07372 1.27364 1.54942 1.25892 0.95698 1.00657 0.99716 0.86044 0.78562 0.80643 0.78245 1.18812 1.24018 1.19349 1.18841 0.85925 0.93592 1.39916 0.92559 1.44411 1.07104 1.37914 1.44778 1.21535 0.92060 0.91692 0.94014 1.22233 0.99163 0.91120 0.89371 1.47951 1.08770 1.33846 1.41406 1.18123 0.81808 0.83932 0.81654 1.90799 1.55854 1.39152 1.58258 1.19830 0.94102 1.01542 0.99268 1.21704 1.01720 0.95671 0.91950 1.17146 0.87397 0.98216 0.89463 1.91608 1.70899 1.87127 1.59847 1.20929 0.92517 0.96712 0.95184 1.98438 1.88132 1.56454 1.55795 1.21013 1.02770 0.96768 0.92144 1.17511 0.86538 0.95290 0.87875 1.91599 1.70483 1.87448 1.60308 1.23315 0.93253 0.92030 0.97021 1.21803 0.97455 0.92522 0.90187 0.92766 0.95323 0.90234 0.90248 0.88624 0.79272 0.79129 0.88860 0.85602 0.90966 0.94954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.94 13.97 21.65 0.30 -56.63 16 2 C -0.02 -1.32 5.22 84.86 0.44 -0.87 16 3 Si 0.94 43.60 24.41 68.60 1.67 45.27 16 4 H -0.26 -11.07 6.70 99.48 0.67 -10.40 16 5 H -0.31 -15.01 7.11 99.48 0.71 -14.31 16 6 H -0.27 -12.28 6.65 99.48 0.66 -11.62 16 7 C -0.25 -13.48 10.01 84.03 0.84 -12.64 16 8 H 0.06 3.28 8.06 -2.91 -0.02 3.26 16 9 N -0.62 -26.97 2.70 -697.34 -1.88 -28.85 16 10 C 0.13 4.88 6.70 86.57 0.58 5.46 16 11 C 0.10 3.27 6.61 86.57 0.57 3.84 16 12 N -0.59 -17.74 2.95 -820.79 -2.42 -20.16 16 13 C 0.56 16.76 7.35 86.73 0.64 17.40 16 14 O -0.56 -20.24 15.41 -3.96 -0.06 -20.30 16 15 C -0.14 -3.38 5.52 -20.05 -0.11 -3.49 16 16 C -0.09 -1.73 7.40 22.57 0.17 -1.56 16 17 C 0.10 1.73 7.26 22.34 0.16 1.89 16 18 F -0.12 -2.16 16.82 44.97 0.76 -1.41 16 19 C -0.03 -0.40 6.33 22.42 0.14 -0.26 16 20 Cl -0.02 -0.25 28.60 -2.72 -0.08 -0.33 16 21 C -0.11 -1.64 9.79 22.30 0.22 -1.42 16 22 C 0.15 3.22 7.24 22.66 0.16 3.39 16 23 F -0.12 -3.13 16.05 44.97 0.72 -2.41 16 24 C 0.07 1.89 5.09 86.41 0.44 2.33 16 25 C 0.11 4.00 4.37 86.41 0.38 4.38 16 26 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 2.88 7.93 -2.39 -0.02 2.86 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.10 2.91 6.99 -2.39 -0.02 2.89 16 31 H 0.19 3.13 5.38 -2.91 -0.02 3.12 16 32 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.13 2.81 3.52 -3.87 -0.01 2.79 16 35 H 0.07 2.93 4.67 -2.39 -0.01 2.92 16 36 H 0.03 1.23 7.15 -2.39 -0.02 1.21 16 Total: -1.00 -66.45 314.76 4.72 -61.73 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.07 Total: 4.64 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 4.63 Total: 18.44 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -4.00 Total: -105.65 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.06 Total: -20.30 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 1.48 Total: -3.81 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.27 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Total: -66.45 4.72 -61.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152214385.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.332 kcal (2) G-P(sol) polarization free energy of solvation -66.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds