Wall clock time and date at job start Tue Mar 31 2020 16:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46921 * 2 1 4 4 C 1.50696 * 109.47093 * 239.99624 * 2 1 3 5 5 H 1.08005 * 120.00204 * 239.99772 * 4 2 1 6 6 C 1.37880 * 119.99864 * 60.00787 * 4 2 1 7 7 N 1.31509 * 120.00191 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99866 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47186 * 59.99668 * 8 6 4 10 10 H 1.48496 * 109.47050 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46852 * 299.99750 * 8 6 4 12 12 N 1.46502 * 109.46852 * 119.99881 * 2 1 3 13 13 C 1.34777 * 120.00162 * 275.00019 * 12 2 1 14 14 O 1.21606 * 119.99871 * 0.02562 * 13 12 2 15 15 C 1.47429 * 120.00065 * 180.02562 * 13 12 2 16 16 C 1.39763 * 120.19907 * 359.71681 * 15 13 12 17 17 C 1.37930 * 119.90106 * 179.79053 * 16 15 13 18 18 F 1.35096 * 119.85072 * 180.26147 * 17 16 15 19 19 C 1.38787 * 120.30259 * 0.49150 * 17 16 15 20 20 C 1.37962 * 120.39448 * 359.74687 * 19 17 16 21 21 C 1.38932 * 120.09762 * 0.02562 * 20 19 17 22 22 N 1.38996 * 120.15302 * 180.02562 * 21 20 19 23 23 S 1.65608 * 119.99931 * 35.69365 * 22 21 20 24 24 C 1.81396 * 104.44715 * 59.47596 * 23 22 21 25 25 O 1.42097 * 104.27258 * 175.54725 * 23 22 21 26 26 O 1.42098 * 104.27406 * 303.40164 * 23 22 21 27 27 H 1.09005 * 109.46871 * 60.00258 * 1 2 3 28 28 H 1.08997 * 109.47338 * 300.00040 * 1 2 3 29 29 H 1.09004 * 109.47274 * 180.02562 * 1 2 3 30 30 H 0.96998 * 120.00325 * 180.02562 * 7 6 4 31 31 H 0.97000 * 119.99972 * 94.99705 * 12 2 1 32 32 H 1.07997 * 120.04508 * 0.03189 * 16 15 13 33 33 H 1.08001 * 119.80221 * 179.72168 * 19 17 16 34 34 H 1.08009 * 119.95081 * 179.97438 * 20 19 17 35 35 H 0.96997 * 120.00055 * 215.69911 * 22 21 20 36 36 H 1.08996 * 109.47676 * 60.00314 * 24 23 22 37 37 H 1.09005 * 109.46626 * 180.02562 * 24 23 22 38 38 H 1.09001 * 109.47317 * 299.99583 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8271 -0.4200 -5.2204 11 1 3.8075 -1.1191 -4.0075 12 7 2.0182 -0.6906 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8573 1.1615 2.4119 15 6 2.6388 -0.7131 3.5608 16 6 2.9673 -2.0704 3.5041 17 6 3.4311 -2.7134 4.6328 18 9 3.7533 -4.0241 4.5756 19 6 3.5637 -2.0211 5.8284 20 6 3.2384 -0.6823 5.8996 21 6 2.7741 -0.0172 4.7716 22 7 2.4465 1.3318 4.8419 23 16 3.3280 2.3487 5.8070 24 6 5.0198 2.2301 5.1634 25 8 2.7849 3.6360 5.5477 26 8 3.2441 1.7650 7.0998 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.7084 1.1609 -3.4844 31 1 2.2489 -1.6318 1.1527 32 1 2.8618 -2.6140 2.5769 33 1 3.9233 -2.5336 6.7084 34 1 3.3439 -0.1506 6.8338 35 1 1.7016 1.6775 4.3257 36 1 5.0346 2.5450 4.1201 37 1 5.6766 2.8751 5.7473 38 1 5.3650 1.1988 5.2367 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194644105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:13 Heat of formation + Delta-G solvation = -118.417533 kcal Electronic energy + Delta-G solvation = -26334.118008 eV Core-core repulsion = 22218.728724 eV Total energy + Delta-G solvation = -4115.389284 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.99595 -40.32291 -38.24534 -37.26774 -36.21327 -35.45039 -34.59601 -32.69105 -31.51164 -29.71470 -29.10749 -28.56517 -25.35683 -24.35174 -22.90290 -21.32252 -19.95657 -19.62739 -18.40214 -17.94897 -17.89743 -16.64057 -16.59249 -16.18854 -15.74562 -15.69335 -15.44333 -15.23677 -14.49282 -14.41332 -14.19732 -13.76434 -13.61433 -13.43928 -13.34582 -13.10618 -12.79523 -12.49918 -12.33766 -12.19839 -12.10270 -11.80996 -11.41095 -11.32200 -11.18449 -11.03881 -10.88410 -10.77781 -10.41332 -10.31721 -9.38513 -9.33291 -9.16000 -8.65383 -8.39393 -8.07143 -6.20644 -4.30888 -0.06081 0.62390 0.92959 2.36673 2.89084 3.20502 3.26418 3.26950 3.50102 3.73211 3.76875 3.95229 4.08237 4.28563 4.46267 4.54786 4.58536 4.73780 4.83127 4.99955 5.11964 5.27277 5.46414 5.52346 5.74253 5.76480 5.91497 6.12272 6.54615 6.72320 6.81403 6.95637 7.02955 7.28830 7.41104 7.58119 7.79010 8.04175 8.44583 8.63052 8.87282 9.36628 10.85154 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003822 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.815182 B = 7323.293520 C = 8807.459470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.695 5.695 13 C 0.546 3.454 14 O -0.548 6.548 15 C -0.123 4.123 16 C -0.098 4.098 17 C 0.073 3.927 18 F -0.138 7.138 19 C -0.102 4.102 20 C -0.163 4.163 21 C 0.202 3.798 22 N -1.036 6.036 23 S 2.608 3.392 24 C -0.669 4.669 25 O -0.945 6.945 26 O -0.956 6.956 27 H 0.092 0.908 28 H 0.016 0.984 29 H 0.027 0.973 30 H 0.266 0.734 31 H 0.390 0.610 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.175 0.825 35 H 0.443 0.557 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.447 -3.850 16.399 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.341 5.341 13 C 0.332 3.668 14 O -0.428 6.428 15 C -0.131 4.131 16 C -0.118 4.118 17 C 0.052 3.948 18 F -0.116 7.116 19 C -0.122 4.122 20 C -0.184 4.184 21 C 0.102 3.898 22 N -0.791 5.791 23 S 2.701 3.299 24 C -0.819 4.819 25 O -0.936 6.936 26 O -0.946 6.946 27 H 0.110 0.890 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.224 0.776 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.192 0.808 35 H 0.289 0.711 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.898 -2.342 17.011 18.505 hybrid contribution 0.629 -1.420 -1.731 2.325 sum 7.527 -3.762 15.280 17.444 Atomic orbital electron populations 1.22089 0.98125 0.99298 1.01117 1.18849 0.91235 0.94083 0.79600 0.92956 1.21140 1.32874 1.13414 0.90234 0.92073 1.24873 0.94692 0.94904 0.99072 1.69878 1.35519 1.22311 1.24168 0.86489 0.79168 0.79610 0.81726 1.20109 1.21077 1.20153 1.46541 1.63630 1.13633 1.10337 1.17892 0.79133 0.86698 0.83089 1.90596 1.52311 1.15467 1.84473 1.20079 1.05111 0.93824 0.94058 1.21290 0.98088 0.93813 0.98590 1.17492 1.03450 0.78853 0.94964 1.91517 1.90613 1.32426 1.97065 1.21123 0.99843 0.94231 0.97014 1.21846 1.03052 0.94927 0.98588 1.17395 0.96382 0.84022 0.92049 1.53512 1.45600 1.15382 1.64597 1.05075 0.77149 0.73383 0.74248 1.30456 1.24757 1.11984 1.14722 1.93649 1.76256 1.38552 1.85112 1.93535 1.86074 1.77254 1.37722 0.88952 0.96500 0.95361 0.92390 0.77635 0.83574 0.83732 0.80802 0.71099 0.84465 0.84975 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.31 2.56 -69.08 -0.18 6.14 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -13.58 8.73 -34.44 -0.30 -13.88 16 5 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.98 11.32 55.43 0.63 -23.35 16 8 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 10 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.69 -13.34 5.02 -56.01 -0.28 -13.62 16 13 C 0.55 9.91 7.73 -12.52 -0.10 9.81 16 14 O -0.55 -11.31 13.58 5.27 0.07 -11.24 16 15 C -0.12 -1.73 5.89 -104.81 -0.62 -2.35 16 16 C -0.10 -1.17 9.51 -39.12 -0.37 -1.54 16 17 C 0.07 0.80 7.28 -39.49 -0.29 0.51 16 18 F -0.14 -1.55 17.26 2.25 0.04 -1.51 16 19 C -0.10 -0.97 10.00 -39.48 -0.39 -1.36 16 20 C -0.16 -1.70 9.24 -39.43 -0.36 -2.06 16 21 C 0.20 2.55 6.11 -83.58 -0.51 2.04 16 22 N -1.04 -13.35 4.96 32.56 0.16 -13.19 16 23 S 2.61 28.70 5.86 -107.50 -0.63 28.07 16 24 C -0.67 -5.18 10.69 101.05 1.08 -4.10 16 25 O -0.95 -13.98 18.08 -57.54 -1.04 -15.02 16 26 O -0.96 -11.54 15.08 -57.54 -0.87 -12.40 16 27 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.39 6.43 6.57 -40.82 -0.27 6.16 16 32 H 0.15 1.60 6.40 -52.49 -0.34 1.26 16 33 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.17 1.70 5.20 -52.48 -0.27 1.43 16 35 H 0.44 6.45 6.54 -34.48 -0.23 6.23 16 36 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -32.22 337.48 -7.53 -39.75 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -3.89 Total: 10.76 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.79 Total: -8.28 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.51 Total: -50.16 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.84 Total: -38.66 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 28.70 SS G_CDS: -0.63 Total: 28.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.22 -7.53 -39.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194644105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.663 kcal (2) G-P(sol) polarization free energy of solvation -32.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds