Wall clock time and date at job start Tue Mar 31 2020 16:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.46921 * 2 1 4 4 C 1.50696 * 109.47093 * 239.99624 * 2 1 3 5 5 H 1.08005 * 120.00204 * 239.99772 * 4 2 1 6 6 C 1.37880 * 119.99864 * 60.00787 * 4 2 1 7 7 N 1.31509 * 120.00191 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99866 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47186 * 59.99668 * 8 6 4 10 10 H 1.48496 * 109.47050 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46852 * 299.99750 * 8 6 4 12 12 N 1.46502 * 109.46852 * 119.99881 * 2 1 3 13 13 C 1.34777 * 120.00162 * 275.00019 * 12 2 1 14 14 O 1.21606 * 119.99871 * 0.02562 * 13 12 2 15 15 C 1.47429 * 120.00065 * 180.02562 * 13 12 2 16 16 C 1.39763 * 120.19907 * 359.71681 * 15 13 12 17 17 C 1.37930 * 119.90106 * 179.79053 * 16 15 13 18 18 F 1.35096 * 119.85072 * 180.26147 * 17 16 15 19 19 C 1.38787 * 120.30259 * 0.49150 * 17 16 15 20 20 C 1.37962 * 120.39448 * 359.74687 * 19 17 16 21 21 C 1.38932 * 120.09762 * 0.02562 * 20 19 17 22 22 N 1.38996 * 120.15302 * 180.02562 * 21 20 19 23 23 S 1.65608 * 119.99931 * 35.69365 * 22 21 20 24 24 C 1.81396 * 104.44715 * 59.47596 * 23 22 21 25 25 O 1.42097 * 104.27258 * 175.54725 * 23 22 21 26 26 O 1.42098 * 104.27406 * 303.40164 * 23 22 21 27 27 H 1.09005 * 109.46871 * 60.00258 * 1 2 3 28 28 H 1.08997 * 109.47338 * 300.00040 * 1 2 3 29 29 H 1.09004 * 109.47274 * 180.02562 * 1 2 3 30 30 H 0.96998 * 120.00325 * 180.02562 * 7 6 4 31 31 H 0.97000 * 119.99972 * 94.99705 * 12 2 1 32 32 H 1.07997 * 120.04508 * 0.03189 * 16 15 13 33 33 H 1.08001 * 119.80221 * 179.72168 * 19 17 16 34 34 H 1.08009 * 119.95081 * 179.97438 * 20 19 17 35 35 H 0.96997 * 120.00055 * 215.69911 * 22 21 20 36 36 H 1.08996 * 109.47676 * 60.00314 * 24 23 22 37 37 H 1.09005 * 109.46626 * 180.02562 * 24 23 22 38 38 H 1.09001 * 109.47317 * 299.99583 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8271 -0.4200 -5.2204 11 1 3.8075 -1.1191 -4.0075 12 7 2.0182 -0.6906 1.1962 13 6 2.1469 -0.0183 2.3572 14 8 1.8573 1.1615 2.4119 15 6 2.6388 -0.7131 3.5608 16 6 2.9673 -2.0704 3.5041 17 6 3.4311 -2.7134 4.6328 18 9 3.7533 -4.0241 4.5756 19 6 3.5637 -2.0211 5.8284 20 6 3.2384 -0.6823 5.8996 21 6 2.7741 -0.0172 4.7716 22 7 2.4465 1.3318 4.8419 23 16 3.3280 2.3487 5.8070 24 6 5.0198 2.2301 5.1634 25 8 2.7849 3.6360 5.5477 26 8 3.2441 1.7650 7.0998 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 0.7084 1.1609 -3.4844 31 1 2.2489 -1.6318 1.1527 32 1 2.8618 -2.6140 2.5769 33 1 3.9233 -2.5336 6.7084 34 1 3.3439 -0.1506 6.8338 35 1 1.7016 1.6775 4.3257 36 1 5.0346 2.5450 4.1201 37 1 5.6766 2.8751 5.7473 38 1 5.3650 1.1988 5.2367 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194644105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:11 Heat of formation + Delta-G solvation = -142.465105 kcal Electronic energy + Delta-G solvation = -26335.160789 eV Core-core repulsion = 22218.728724 eV Total energy + Delta-G solvation = -4116.432065 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 330.088 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -49.85996 -41.48968 -39.52335 -38.25445 -37.18389 -36.89665 -35.88150 -34.36903 -32.73523 -30.59644 -30.36966 -29.73076 -27.34133 -25.46840 -23.95616 -22.77475 -21.45179 -20.62787 -19.70304 -18.89103 -18.82921 -18.10803 -17.63737 -17.29291 -16.99600 -16.70609 -16.58743 -16.54025 -16.01442 -15.73894 -15.32403 -14.78187 -14.67944 -14.41794 -14.30814 -14.13659 -14.03792 -13.81354 -13.60764 -13.33209 -13.17321 -13.06893 -12.98806 -12.86471 -12.73743 -12.33712 -12.26402 -12.20996 -12.13486 -11.71919 -11.12325 -10.78756 -10.58451 -10.33116 -9.81737 -9.26314 -8.17591 -6.34990 -0.91076 -0.34202 0.02855 1.46291 1.46892 1.47436 1.55326 1.78243 2.29369 2.50392 2.57215 2.67776 3.09876 3.13425 3.16742 3.61280 3.65996 3.76530 4.01200 4.02468 4.10903 4.25075 4.56056 4.75505 4.84782 4.87799 4.90956 4.92501 5.05432 5.08448 5.20234 5.40415 5.54677 5.65472 5.68150 5.85850 5.93050 6.09399 6.71271 6.85797 7.29136 7.44562 8.88216 Molecular weight = 330.09amu Principal moments of inertia in cm(-1) A = 0.013193 B = 0.003822 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.815182 B = 7323.293520 C = 8807.459470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.271 3.729 3 H 0.007 0.993 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.970 3.030 9 H -0.265 1.265 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.695 5.695 13 C 0.545 3.455 14 O -0.580 6.580 15 C -0.144 4.144 16 C -0.093 4.093 17 C 0.071 3.929 18 F -0.137 7.137 19 C -0.077 4.077 20 C -0.158 4.158 21 C 0.201 3.799 22 N -1.048 6.048 23 S 2.613 3.387 24 C -0.651 4.651 25 O -0.990 6.990 26 O -0.968 6.968 27 H 0.067 0.933 28 H 0.015 0.985 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.404 0.596 32 H 0.153 0.847 33 H 0.181 0.819 34 H 0.186 0.814 35 H 0.434 0.566 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 -6.163 17.730 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.025 0.975 4 C -0.586 4.586 5 H 0.092 0.908 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.344 5.344 13 C 0.333 3.667 14 O -0.463 6.463 15 C -0.151 4.151 16 C -0.113 4.113 17 C 0.051 3.949 18 F -0.116 7.116 19 C -0.096 4.096 20 C -0.179 4.179 21 C 0.100 3.900 22 N -0.799 5.799 23 S 2.711 3.289 24 C -0.805 4.805 25 O -0.981 6.981 26 O -0.958 6.958 27 H 0.086 0.914 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.171 0.829 33 H 0.199 0.801 34 H 0.203 0.797 35 H 0.276 0.724 36 H 0.154 0.846 37 H 0.181 0.819 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.945 -4.698 18.389 20.982 hybrid contribution 0.050 -0.706 -2.030 2.150 sum 8.995 -5.403 16.360 19.436 Atomic orbital electron populations 1.21913 0.98225 0.99468 0.99775 1.18403 0.91125 0.92216 0.81465 0.97511 1.21493 1.32748 1.13660 0.90729 0.90821 1.25748 0.94830 0.95524 1.02206 1.70032 1.36815 1.23852 1.24677 0.85429 0.78677 0.78700 0.77723 1.18981 1.21356 1.19538 1.46227 1.64334 1.14217 1.09589 1.18464 0.78062 0.86418 0.83760 1.90585 1.53473 1.17084 1.85149 1.19629 1.08138 0.94683 0.92671 1.21316 0.97484 0.92914 0.99577 1.17491 1.03487 0.78887 0.95027 1.91528 1.90594 1.32365 1.97065 1.21495 0.97057 0.93500 0.97523 1.21951 1.02721 0.95332 0.97931 1.17602 0.96231 0.83862 0.92271 1.53604 1.45869 1.16023 1.64373 1.04818 0.78250 0.72075 0.73770 1.30309 1.21188 1.14251 1.14744 1.93593 1.78173 1.40689 1.85653 1.93504 1.86860 1.76994 1.38435 0.91442 0.96615 0.94240 0.92553 0.75992 0.82923 0.80120 0.79740 0.72352 0.84602 0.81896 0.83013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 9.26 71.98 0.67 -5.94 16 2 C 0.27 13.41 2.56 44.24 0.11 13.52 16 3 H 0.01 0.41 7.58 -2.39 -0.02 0.39 16 4 C -0.55 -27.84 8.73 25.60 0.22 -27.61 16 5 H 0.07 3.47 7.74 -2.91 -0.02 3.44 16 6 C 0.02 0.90 5.30 84.66 0.45 1.35 16 7 N -0.92 -51.16 11.32 21.45 0.24 -50.92 16 8 Si 0.97 40.77 29.54 68.60 2.03 42.79 16 9 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 10 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 12 N -0.70 -27.09 5.02 -449.38 -2.26 -29.35 16 13 C 0.54 20.16 7.73 86.66 0.67 20.83 16 14 O -0.58 -25.10 13.58 -4.05 -0.05 -25.16 16 15 C -0.14 -3.92 5.89 -19.98 -0.12 -4.04 16 16 C -0.09 -2.05 9.51 22.57 0.21 -1.84 16 17 C 0.07 1.33 7.28 22.33 0.16 1.49 16 18 F -0.14 -2.63 17.26 44.97 0.78 -1.85 16 19 C -0.08 -1.13 10.00 22.34 0.22 -0.90 16 20 C -0.16 -2.83 9.24 22.37 0.21 -2.62 16 21 C 0.20 4.82 6.11 38.68 0.24 5.06 16 22 N -1.05 -27.11 4.96 -50.91 -0.25 -27.37 16 23 S 2.61 56.09 5.86 -56.49 -0.33 55.75 16 24 C -0.65 -8.46 10.69 113.37 1.21 -7.25 16 25 O -0.99 -30.17 18.08 -127.65 -2.31 -32.48 16 26 O -0.97 -22.03 15.08 -127.65 -1.92 -23.95 16 27 H 0.07 3.64 6.07 -2.38 -0.01 3.63 16 28 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.40 13.16 6.57 -92.71 -0.61 12.56 16 32 H 0.15 3.07 6.40 -2.91 -0.02 3.05 16 33 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.19 3.01 5.20 -2.91 -0.02 3.00 16 35 H 0.43 13.31 6.54 -96.74 -0.63 12.68 16 36 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.16 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.78 337.48 0.08 -71.70 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.10 Total: 28.77 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.26 Total: -7.95 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -2.27 Total: -107.63 kcal Atomic # 8 Polarization: -77.30 SS G_CDS: -4.29 Total: -81.59 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.78 Total: -1.85 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 16 Polarization: 56.09 SS G_CDS: -0.33 Total: 55.75 kcal Total: -71.78 0.08 -71.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194644105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.766 kcal (2) G-P(sol) polarization free energy of solvation -71.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds