Wall clock time and date at job start Tue Mar 31 2020 15:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38078 * 119.50594 * 2 1 4 4 C 1.38740 * 119.34584 * 179.74354 * 3 2 1 5 5 C 1.38983 * 118.42154 * 0.47458 * 4 3 2 6 6 N 1.40044 * 120.50748 * 179.78150 * 5 4 3 7 7 C 1.34777 * 119.99965 * 24.46022 * 6 5 4 8 8 O 1.21625 * 120.00354 * 5.80216 * 7 6 5 9 9 C 1.47405 * 119.99809 * 185.80887 * 7 6 5 10 10 C 1.39689 * 120.21708 * 359.97340 * 9 7 6 11 11 C 1.37799 * 119.93937 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.37933 * 0.02562 * 11 10 9 13 13 C 1.37908 * 120.44465 * 359.97438 * 12 11 10 14 14 C 1.39114 * 120.05114 * 359.97438 * 13 12 11 15 15 S 1.76192 * 120.19242 * 180.02562 * 14 13 12 16 16 C 1.76201 * 100.00026 * 354.26406 * 15 14 13 17 17 H 1.07994 * 120.00071 * 5.04572 * 16 15 14 18 18 C 1.38805 * 120.00218 * 185.03784 * 16 15 14 19 19 N 1.31548 * 120.00333 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99923 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47099 * 89.99893 * 20 18 16 22 22 H 1.48495 * 109.47309 * 209.99624 * 20 18 16 23 23 H 1.48503 * 109.47048 * 329.99937 * 20 18 16 24 24 C 1.39510 * 118.98215 * 359.50847 * 5 4 3 25 25 O 1.35749 * 119.72557 * 180.25453 * 24 5 4 26 26 N 1.31996 * 119.51389 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47657 * 270.02385 * 1 2 3 28 28 H 1.09003 * 109.47157 * 30.02771 * 1 2 3 29 29 H 1.09007 * 109.46944 * 150.01848 * 1 2 3 30 30 H 1.07995 * 120.33292 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.78946 * 180.23320 * 4 3 2 32 32 H 0.96997 * 119.99879 * 204.45658 * 6 5 4 33 33 H 1.07999 * 120.02972 * 359.97438 * 10 9 7 34 34 H 1.07994 * 119.81080 * 180.02562 * 11 10 9 35 35 H 1.08004 * 119.77779 * 180.27812 * 12 11 10 36 36 H 1.07997 * 119.98146 * 180.02562 * 13 12 11 37 37 H 0.97002 * 120.00391 * 180.02562 * 19 18 16 38 38 H 0.96696 * 113.99852 * 89.99578 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.2017 0.0000 4 6 3.5744 1.1978 0.0054 5 6 4.2325 -0.0263 0.0006 6 7 5.6319 -0.0812 0.0011 7 6 6.3466 0.9520 0.4892 8 8 5.7791 1.8849 1.0248 9 6 7.8161 0.9514 0.3738 10 6 8.4726 -0.1179 -0.2402 11 6 9.8467 -0.1128 -0.3445 12 6 10.5841 0.9488 0.1574 13 6 9.9522 2.0125 0.7665 14 6 8.5658 2.0267 0.8807 15 16 7.7546 3.3842 1.6576 16 6 9.1537 4.2930 2.2245 17 1 10.1501 3.9690 1.9631 18 6 8.9751 5.4254 3.0071 19 7 10.0196 6.1042 3.4299 20 14 7.2515 5.9856 3.4598 21 1 6.8411 5.3435 4.7344 22 1 7.2374 7.4616 3.6222 23 1 6.3058 5.5970 2.3827 24 6 3.4777 -1.1996 0.0009 25 8 4.1050 -2.4035 0.0015 26 7 2.1573 -1.1487 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6444 2.1354 0.0004 31 1 4.1298 2.1241 0.0093 32 1 6.0867 -0.8627 -0.3498 33 1 7.9039 -0.9482 -0.6319 34 1 10.3521 -0.9404 -0.8199 35 1 11.6603 0.9449 0.0663 36 1 10.5339 2.8356 1.1544 37 1 9.8948 6.8954 3.9771 38 1 4.2867 -2.7519 0.8850 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756240708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:11 Heat of formation + Delta-G solvation = -3.466744 kcal Electronic energy + Delta-G solvation = -24627.193391 eV Core-core repulsion = 20947.557972 eV Total energy + Delta-G solvation = -3679.635419 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 330.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09688 -39.57841 -37.80027 -37.34791 -35.05376 -32.82279 -32.17690 -31.62466 -30.54332 -30.48680 -27.06727 -26.02203 -23.83899 -23.58721 -22.40046 -21.98636 -20.32853 -18.93779 -18.66292 -17.71232 -17.01954 -16.58367 -16.09383 -15.72051 -15.23621 -15.06933 -14.83666 -14.38212 -14.15009 -14.03905 -13.98811 -13.48358 -13.22736 -12.85442 -12.66494 -12.56138 -12.30680 -12.11808 -11.99981 -11.83298 -11.42990 -11.26998 -11.03688 -10.85011 -10.63839 -10.22484 -9.78475 -9.63252 -9.59441 -9.42942 -8.96222 -8.60922 -8.37811 -8.07886 -6.93403 -6.57589 -4.30537 0.78878 1.11604 1.34800 1.79522 2.74595 2.98754 3.07993 3.13583 3.26709 3.33866 3.36482 3.72128 4.05366 4.23253 4.50044 4.50236 4.66968 4.85029 4.85663 4.92229 5.11591 5.22055 5.33956 5.41669 5.42662 5.49522 5.70528 5.74459 5.90016 5.92628 6.10477 6.13695 6.23912 6.36374 6.59288 6.61559 6.80883 6.94008 7.30160 7.31958 7.42051 7.65552 7.81572 8.25454 8.27583 8.85653 10.49398 Molecular weight = 330.08amu Principal moments of inertia in cm(-1) A = 0.012378 B = 0.004033 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.505264 B = 6941.506999 C = 9034.058523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.116 3.884 3 C -0.154 4.154 4 C -0.077 4.077 5 C 0.102 3.898 6 N -0.666 5.666 7 C 0.554 3.446 8 O -0.494 6.494 9 C -0.178 4.178 10 C -0.063 4.063 11 C -0.175 4.175 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.028 4.028 15 S 0.091 5.909 16 C -0.581 4.581 17 H 0.108 0.892 18 C 0.104 3.896 19 N -0.859 5.859 20 Si 0.851 3.149 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.235 1.235 24 C 0.275 3.725 25 O -0.480 6.480 26 N -0.482 5.482 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.141 0.859 31 H 0.165 0.835 32 H 0.413 0.587 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.148 0.852 37 H 0.276 0.724 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.007 -12.961 -7.112 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.023 4.023 3 C -0.174 4.174 4 C -0.105 4.105 5 C 0.002 3.998 6 N -0.311 5.311 7 C 0.346 3.654 8 O -0.371 6.371 9 C -0.193 4.193 10 C -0.083 4.083 11 C -0.199 4.199 12 C -0.094 4.094 13 C -0.168 4.168 14 C -0.147 4.147 15 S 0.353 5.647 16 C -0.727 4.727 17 H 0.125 0.875 18 C -0.107 4.107 19 N -0.492 5.492 20 Si 0.675 3.325 21 H -0.187 1.187 22 H -0.193 1.193 23 H -0.159 1.159 24 C 0.093 3.907 25 O -0.287 6.287 26 N -0.201 5.201 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.182 0.818 32 H 0.251 0.749 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.086 0.914 38 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -12.956 -12.244 -6.906 19.117 hybrid contribution 1.767 0.248 0.512 1.856 sum -11.189 -11.996 -6.395 17.606 Atomic orbital electron populations 1.20668 0.88578 1.03351 1.03024 1.20906 0.96710 0.87208 0.97451 1.21934 0.94191 0.99325 1.01945 1.21948 0.94270 0.98397 0.95883 1.18833 0.84288 0.94131 1.02521 1.43396 1.03340 1.21924 1.62473 1.18486 0.87600 0.81633 0.77727 1.90728 1.70995 1.34258 1.41079 1.18944 0.90673 0.98100 1.11550 1.20919 0.94882 0.95823 0.96644 1.20743 0.93570 0.99915 1.05625 1.21188 0.99440 0.93243 0.95514 1.21599 0.93539 1.00246 1.01461 1.22499 0.96576 0.97547 0.98076 1.84003 1.09987 1.12945 1.57745 1.23520 0.95898 1.15022 1.38286 0.87468 1.24803 0.97653 0.94807 0.93454 1.69897 1.29997 1.17026 1.32309 0.86866 0.84446 0.79505 0.81719 1.18662 1.19282 1.15936 1.18677 0.86763 0.84102 1.01200 1.84774 1.76649 1.33266 1.33973 1.66896 1.08455 1.30669 1.14127 0.90523 0.90610 0.90654 0.84149 0.81771 0.74876 0.86794 0.86513 0.86389 0.83432 0.91377 0.74609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.16 36.01 0.37 -0.44 16 2 C 0.12 1.36 6.78 -82.58 -0.56 0.80 16 3 C -0.15 -1.82 9.72 -39.45 -0.38 -2.21 16 4 C -0.08 -1.10 8.82 -39.12 -0.35 -1.45 16 5 C 0.10 1.43 6.47 -83.35 -0.54 0.89 16 6 N -0.67 -9.09 5.23 -10.62 -0.06 -9.15 16 7 C 0.55 9.59 7.57 -12.53 -0.09 9.49 16 8 O -0.49 -9.96 10.98 5.26 0.06 -9.90 16 9 C -0.18 -3.17 5.89 -104.75 -0.62 -3.78 16 10 C -0.06 -0.89 9.53 -39.20 -0.37 -1.26 16 11 C -0.17 -2.43 10.02 -39.59 -0.40 -2.82 16 12 C -0.07 -1.13 10.02 -39.55 -0.40 -1.53 16 13 C -0.14 -2.84 9.26 -39.38 -0.36 -3.21 16 14 C -0.03 -0.58 6.15 -38.39 -0.24 -0.82 16 15 S 0.09 2.20 16.53 -107.50 -1.78 0.42 16 16 C -0.58 -15.72 9.63 30.94 0.30 -15.42 16 17 H 0.11 2.98 5.05 -52.49 -0.27 2.72 16 18 C 0.10 2.86 5.50 -17.46 -0.10 2.76 16 19 N -0.86 -24.38 13.96 55.49 0.77 -23.61 16 20 Si 0.85 20.22 27.74 -169.99 -4.71 15.51 16 21 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.24 -5.52 6.74 56.52 0.38 -5.14 16 24 C 0.28 3.63 7.77 -16.94 -0.13 3.50 16 25 O -0.48 -5.20 13.00 -18.96 -0.25 -5.45 16 26 N -0.48 -6.51 10.29 -9.39 -0.10 -6.60 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 29 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.16 2.61 5.88 -52.49 -0.31 2.30 16 32 H 0.41 4.56 6.41 -40.82 -0.26 4.30 16 33 H 0.11 1.19 6.42 -52.49 -0.34 0.86 16 34 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 36 H 0.15 3.18 4.94 -52.49 -0.26 2.93 16 37 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.40 2.64 9.06 45.56 0.41 3.06 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -32.03 336.58 -7.56 -39.59 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.71 Total: 9.62 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -3.87 Total: -15.49 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.62 Total: -39.36 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.19 Total: -15.35 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.71 Total: 15.51 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -1.78 Total: 0.42 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.03 -7.56 -39.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756240708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.124 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds